RNA id: XM_043223106.1


Basic Information

Item Value
RNA id XM_043223106.1
length 4563
RNA type mRNA
GC content 0.49
exon number 16
gene id LOC122327646
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 17696875 ~ 17741017 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTTCATTCCGGTGCACATGGAAAGGCAGAGGAGCAGGAACGGTCAGCGCTCGGAAGGTGAAACGCGCTCAGGGATTTTACGCGCAAAGCCTCtgtaaggtgtttttttttttttttacgggaCGCGCTTTATTATTGGACTACAACAGAATGCTATTTGAGGCGGAATGGACATTTAAACAACTGTTCTCCGCGTAGGGATTTCACTGTGCAACATCTACAAACGGACGCGCGTGTTCTCCTCTGATGAAAAATAAGCCGGGAGGAGCGTTTACCGGGCGGATGAGTTTTAAAGCTCtttagatatacatatatatattttttgcacgtTGGATTACGCGAACACTGCTGCGATCGCGGTTTATGGAAACAGAGCCGAGAAGAAGACAGCTGAAGTTGGAGAAGAGGGTCTCTAAAGCTGGACTGAGGGTCTGAAGGATTTTACAATCTCCTCCCGGAGCTCCACTTTCATGTCCGAAGTCTCTGGTTTATGACAATGgattatttgctgtttttatgcGGTTTTTTGCTGCCTCTTTCCTCGGCTGTTGAAGAAACACTGATGGACACCAAATGGGCCACCACTGAACTCGCATGGACCTCACATCCTGAAACCGGGtGGGAGGAAGTTAGCGGCTACGATGATGCCATGAACCCCATCCGAACGTACCAAGTGTGCAACGTTCGCGAGCTTAACCAGAACAACTGGCTTCGCAGTGACTTCATCCCTCGGAAGGACGTTCTCCGTGTTTATGTGGAGATGAAGTTCACCGTTCGAGATTGCAACAGTATTCCCAACATTCCAGGATCGTGTAAAGAGACCTTCAATCTATTCTACTACGAGTCCGACTCGGATTCTGCCACCGCCACCAGTCCTTTTTGGATGGAGAACCCTTATGTTAAGGTGGACACCATTGCTCCAGATGAGAGCTTCTCTATGTTGGAGTCTGGCCGAGTCAACACCAAGATTCGCAGCTTTGGTCCACTTTCCAAGGCTGGCTTCTATCTGGCTTTCCAGGACCTGGGCGCCTGCATGTCTTTAATCTCCGTCCGAGTTTTTTACAAGAAGTGTTCCACAACCATTGCCAATTTTGCCGTCTTCCCAGAGACGGCCACAGGAGCCGAGGCTACGTCACTGGTCATCGCCCCGGGCACTTGTGTGCCGAATGCTCTGGAGGTGTCTGTCCCTCTTAAACTCTACTGCAATGGAGATGGAGAGTGGATGGTTCCTGTAGGCTCCTGCACTTGCATGGCTGGGTTCGAGCCTGCAGTTAAGGACACCCAGTGTCAAGctTGCAGTCCAGGCACCTTCAAGTCCAAGCAGGGTGAAGGTTTCTGCTCCCCGTGTCCACCCAACAGCCGGACAAGTTCTGGAGCCGCCAGCATCTGTTCCTGCAGAACCGGCTACTATCGGGCAGACAACGACTCGCCTGACTCAGGATGCACCACCGTGCCCTCAGCTCCACGCAGCGTCATCTCCAGTGTAAATGAGACGTCTCTTGTACTTGAGTGGAGCGAACCTCGTGACCAAGGTGGAAGGGAGGACCTTCTCTACAATGTCATCTGTAAGAAATGTCTTCCTGAACGTGGTACCTGCACACGATGTGATGACAACGTGGATATCTCTCCCCGCCACCTTGGGCTTACTGAGAGACATGTTACAGTCAGAAACCTTCAGGCTCATACCCAGTACAGCTTTGAGATTCAGGCCGTTAATGGAGTCTCCAACAAGAGTCCTTACGCACCCCAGTTTGCCTCTGTAAACATCACCACCAACCAGGCTGCTCCCTCTGCAGTTCCTACTGTCCACCTGATGGGGTCCTCAGCCAACACCATGAGTCTTTCCTGGCTTCCCCCTGAAAAACCAAATGGCATCATCTTGGATTACGAGATTAAATACCATGAGAAGGACCAGGGAGAAGCTATTGCCCACACCATGACAGCCCAGCGTAGCTCGGCACGCATTGAGGGTTTGAAGCCAGGCACGCCGTATGTTGTGCAGGTTCGAGCCCGAACGGTGGCAGGGTATGGCCGTTACAGCAACCCTACTGACTTTAGCACCAACCACCAGGCCGATGCAGACAAGACTCTACAGGAGCAGTTACCTCTCATTGTGGGTTCTCTGACAGCAGGGCTGGTCTTCATCATTGTTGTTGTAGTCATTGCCATCGTCTGCCTcagGAAGCAACGCAATGGCTCAGAATCAGAGTACACAGAAAAACTGCAACAATACAAATCCCCTATAGTCACTCCGGGGATGAAGGTCTACATTGACCCATTCACCTACGAGGACCCGAATGAGGCCATCCGCGAGTTTGCCAAAGAGATTGACGTTTCCTGTGTGAAAATCGAGGAAGTCATTGGCGCAGGTAACCAACAACACAAGCTCCTGAGCAACAGGGGGAAGACAGCTAGGCACACCCAGGCCATACCTTTAGAGGACTTCACACCAAGCGGAGAGTTTGGAGAGGTGTGCCGAGGTCGTCTGAAACTGCCTGGACGACGTGAAATCATTGTGGCCATCAAGACTCTAAAGGCAGGCTACACAGAGCGGCAAAGAAGAGACTTCCTGAGTGAGGCCAGCATCATGGGCCAGTTCGATCATCCTAATATTATCCGCCTGGAAGGGGTGGTGACGAAGAGCCGTCCAGTCATGATTGTTACTGAATTCATGGAGAACGGAGCATTGGATTCCTTTCTCCGGCTAAATGATGGACAGTTCACAGTCATCCAGCTCGTTGGTATGTTGAGAGGCATTGCAGCTGGCATGAAATATCTGTCTGACATGAACTACGTGCACCGTGATTTGGCTGCTCGTAACATTCTGGTCAACAGCAACTTGGTGTGTAAGGTGTCCGATTTTGGCCTTTCTCGTTTCTTGGAGGATGATCCCACTGATCCAACCTACACCAGCTCATTGGGAGGGAAAATTCCTATTCGCTGGACAGCACCAGAGGCTATTGCTTATAGGAAGTTCACTTCAGCTAGTGACGTCTGGAGCTATGGCATTGTGATGTGGGAGGTGATGTCGTATGGCGAGCGCCCATACTGGGACATGAGCAACCaagatGTGATCAACGCAGTCGAGCAGGATTACCGACTGCCCCCTCCTATGGACTGCCCTACTGCCTTGCATCAACTCATGTTAGACTGCTGGGTGAAGGAAAGAAACTTGAGACCCAAGTTCTCCCAGATCGTCAATACTTTGGACAAACTTATTCGCAATGCCGCCAGCCTTAAGGTGGTCACCAGCACACATTCTGGgGCCTCCCAGCCGCTCCTCGACCGCTGTGTGCCTGACTACACCACCTTCACCACTGTGGGCGACTGGCTGGATGCCATCAAGATGAGCCGCTACAGAGACAACTTCCTTAATGCTGGCTTCGCctcttttgacttggtggcccAGATGACTGCAGAaGACCTGTTACGGATAGGTGTAACACTAGCCGGCCACCAAAAGAAGATTCTCGGCAGCATTCAAGACATGAGACTGCAAATGAACCAAACGCTGCCCGTCCAGGTCTGAGATGGGGGGCGGAACTGTTCTAAAGCGAACTAACAGACGACCCCAGATCATCTCCACTAATCAGATGAAACTGGCTCGCAGTGCCTCGGacaactttttcttttccattttcctGTTTTCCTGTAACGACTGCATTATTTTACACCCGACAGGATTAGATAAGattattttgtacttatttttaagaACGGAGAGGAAAGCCTATATCCCATGCATGCCTCACGAGGCTCCAGTGTGGGGTTGGCGATTGCATGCGTGCGTGTGGTATTTTCTTTCGCGAGGCTGGCTGGGAAGCCTCCCATAATGCATTTCTCCCTGAAACTGGCTCTGAGAGATGGACTCTCCCGGATGGACGTTGCTTATGGAAGAGATACTCCTCTAATAGTACACGTAACTTgaatataaaaagacaaaaaaaacaaaacaaaaactagacGTGAATATAAATTCACAAAGCGTGCGGACATGATTGCGCAGAAATCCCTCCAGTGCTAGCAGATGTTCTAttgtgcgtgtgattttgtgcTTATTCCCCATCTTCATATTGAAGGTGTTTTATTTAAGGGCACATGCCTCAAACGGACAGGAGGGAGAGGCACAGCCGAGGGCGAAAGATCACGGATGTCGCAGGACCGGATTTGAGGAAGTTGCATTTGTCCACCAGGTTTAAACTGACAAAAGGACTTCTTAGAATATACCTGGTGAACTCAGGATGCTTTCATAGTTTCAAATAATGGATTCTCAGCTGTGCTTTCACAATTTCAATTGATGTTTTCGTTTATTCTCTTCTGTTGTTTTCCCTCAACCTGTTTAGTTTCCTTTCCACGATGAGTTGACATTTAGCTGGTCATCAGTCATTATATCAGGATTCTTTAGCAGTTAGAAAAGAGAAGGACTGTGATAACCTGTACTACACTgcaagaaatcttttttttttttaaatcagtaaatTTGTCTCACAACGAATATCACAACATTGTTAAAACAAGATCAATCTGAGAAGTAGCGCATCATATTaatacttgatttttttt

Function

GO: NA

KEGG:

id description
K05112 EPHB3, HEK2, ETK2; Eph receptor B3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227477 lncRNA upstream 222275 17473241 ~ 17474600 (+) True G153654
TU227476 lncRNA upstream 224029 17471900 ~ 17472846 (+) True G153653
TU227470 lncRNA upstream 254696 17441873 ~ 17442179 (+) True G153647
TU227465 lncRNA upstream 276931 17419724 ~ 17419944 (+) True G153645
TU227415 lncRNA upstream 623939 17072514 ~ 17072936 (+) True G153610
TU227589 lncRNA downstream 142596 17883613 ~ 17883921 (+) True G153737
TU227592 lncRNA downstream 145629 17886646 ~ 17886876 (+) True G153740
TU227595 lncRNA downstream 198864 17939881 ~ 17940860 (+) True G153743
XM_043223761.1 mRNA upstream 176449 17509728 ~ 17520426 (+) True hykk.2
XM_043223760.1 mRNA upstream 176449 17516130 ~ 17520426 (+) True LOC122328058
XM_043223460.1 mRNA upstream 204220 17490744 ~ 17492655 (+) True dynlt2b
XM_043223358.1 mRNA upstream 257961 17422118 ~ 17438914 (+) True rubcn
XM_043223360.1 mRNA upstream 257961 17422119 ~ 17438914 (+) False rubcn
TU227461 other upstream 277642 17415453 ~ 17419233 (+) False tsc22d2
XR_006247623.1 other upstream 950800 16600632 ~ 16746075 (+) False dock3
TU227194 other upstream 1197462 16493702 ~ 16499413 (+) True G153432
TU227165 other upstream 1310699 16317461 ~ 16386176 (+) False rpl32
unassigned_transcript_2576 other upstream 1547031 16149772 ~ 16149844 (+) True trnaa-agc_28
TU227593 other downstream 185334 17926351 ~ 17927244 (+) True G153741

Expression Profile