RNA id: XM_043223119.1


Basic Information

Item Value
RNA id XM_043223119.1
length 5331
RNA type mRNA
GC content 0.47
exon number 42
gene id LOC122327652
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12616316 ~ 12633995 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATATTACGGTTATATCAGTTGTCCTGCTGTTGTCTCTGACTTATTCTGAGAGTTTAGTTCAGCAGGACGATGTTCTTTCCACTGCTGTTATGGACGGCTTTACTCTGTCACGTCTCAGATGCCCAGACTTCCTCTCAAAGACAGGATCCGGTCATAGACCAATCTCCAGCGTTTTATGTTTTAGCTCCTGCAAAGATAAGGCCTGGAACTAAACAGAACATCCTGCTGGAGGCTCACAAACTGTCCGAGGCGTTAGAAGTCACCATCACGGTCTATGATTATCCACTGTCTGACACTGTCTTAATGAGGGACTCGGTTACCCTCAGTTCAGAAAATAACTACAGTACCCTCAAAACCATTGAGattGATCCAACTCTGCTACAACCAGATGGAAAGAAGAAATATGTGAAGCTGGATGCTCAGTTTAGCAGATTTCATCGTGCAGAAAGAGTTTTACCAGTGTCTTTCCGCTCTGGATACATCTTCATTCAGACTGATAAACCGGTTTATAACCCTGGAGACACAGTGCGTTGCAGGGCTTTTGTGTCTGACACTGAATTCCGTGCTGCTGAGAGGACCATTTCTCTGGAACTTCAGAATCCAGATGGGATCGCAGTACATGGTATTTCCAGAGCCAAATCAATCGATGGGATTCTCTCTAACATTTACCCCCTCTCATCAGTGGTCAAGGAGGGCAGATGGAAAGTTGTTGCAAAGTTTAATCAGGGAAAAGAGAACATTTTCAGCAGAGAGTTTGAAGTCAAGAAATATGTCCTCCCAGCATTCAACGTCACTTTGACTCCAAAGACATCCCACCTCAGACTAGACACAGAAAAGTTGGAGGTGGAAATAACAGCCAGGTATCTTTATGGTGAACCAGTGAAAGGTGTTGCATATGTGCTGTTTGGTATTGAAATTGATGGTGAAAAGAAAAGACTCACGTCTATGaagcaaataaatgatCTGAACGGAGGAAAAGTTATTTTGACAATGGAAGAGATAAAGAAGGTCTATCCTGACACAAACAGCTTACTCGGTTCTTCTGTGTATGTTAAAGCATCAGTAATGACCAGCTCAGGTAGCGACCTTGTGGAAGCAGAGAAATCTGGTATTAAAATTGTCATGACACCCTACATGCTTTCCATCAGAGACACACCAAAGTATTTCATACCTGGCATGCCATTAGACATGACgGTTACCTTGAGTGACCACGATGGATCTCCAGTCCATAATATTCCTGTTAAAATTAGCCTTTTTCAAAACCCAATCACTGTACACAAAGGCACCATCAAAGTCTCCATCAACATGCCTAAGATGTACAGCTCAGATGCTGATACACAGATATTAAAGGTGGAGACAGTAGATCCTTTACTGAAACCAGAACAGCAGGCAGTTCAAGAGATACGTGTGGAGCCATATGCCTCATTTAATGACGACAGGAACTACCTGCACATCACGGTGGGCAGCAGTTCAGTGGTGGTGGGCAGCACACTCAACATCAAAGCTCACATCAAATCTATTCAACCAGAACGAAGAAAACTTGTGGAGCAACTAATGTATGCTGTGATAAGTAAAGGAAATATAATCCACGCTGCTAGGATGAATGTTAAAGACCTGGTCATCATAAACATTCCTCTGCTGGTTACCTCAGAAATGCTACCTGCGTTTCGCTTTGTGGCCTACTATATTTTGCCATGGCAACCCAGGGCGGAAGTGGTGGCGAACTCTGTATTTGTGGATGTGGAGGACCGGTGTGTTGGTTCGCTCAGCGTAGGACCATTGGAAGGAGAAAATGGAAATTCATACTTACCAGGCAGCAGCATTACATTTGAAGTGAAAGGAGACCCGGGGGCAAAGGTCAGCCTGGTTGCTGTGGATAATGCCATCTTCCTGTTAAGTAAAAGCCGTCTGACGCAGAAGAAGGTGTGGGAGGTGGTGGGTCAAGGTGATATGGGCTGCACCGCAGGAGGAGGAAGGAATAATATGGGTGTTTTCAGTGATGCAGGACTGATGTTTCATTCCAGCACAGGAGGATACACAGATTACAAAAATgATTGCTCCAGTAGATCTAGAAGAAGACGTTCTGCTGCCAAACTGCAGCTTAGAGCGCAACTGGAGAAGGTATATTCTGATGAGCTCCTGCAGAGATGTTGTGTGGACGGCATGAGGGAGATTCCCATGCCATATTCCTGCTACCGCCGCTCGCTCTACATCACTGAGGACTGGAGCTGTGTGTTGGCTTTCCTTCGCTGTTGTGCAGAGTACAGAGGAGAGGAGCTTGGTGTCGTGACCAGACCTCCGACAACAACCGCTCCACCAACCACCACCCCTCCGCTCACCATCAGCACCCATTTTCATGTGCCTTATTATGTTAGGGAACGTTTTATTAATCGTGCGCCAGTTCTTATTGCTTTGGCTGGGCGTTTAGGAGGAGTGTTAGAGGCcagtgataaaaacatcagagaagaagaagaggaggtggaggagtttGATGAAGATGATTTAGCTGACTTAGAGGACATTTACGTGCGCAGCAAGTTCTTCGAGTCATGGCTGTGGTCTGACATTACATTACCCAGTGTCACCAAGACTGATGGATTGGCTGTATTACCAGTAAACACTGTTCTTCCTGACAGCATCACTCAGTGGGGGTTTCTAGCCATCAGTGCTTCACCTCAGACAGGTTTCTGTGTAGCCGAACCTTATAATGTCCGTGCGTCAAAGTCATTCTTCATAGATCTGCGGCTGCCTCACTCGGTGTCCAGAAATGAACATGTGGAAATCAAAGCTGTGGTCCATAACTATATGAAGTCAGAACTAGAGGTCATGGTGATTCTGGAGAAGACAGAGGACATGTGTAGCGTGGCATTTACTGGACAACACAGACAGCAGGTTTCGGTTCCGGCCAGCTCATCCAAGCTGATTTCATACACCATCATCCCTCTTAAAACAGGAGAGCTTCCTCTACAGGTCACAGCTGTCGCAGCCTCTTTAATGGGGGAGGATGCTGTAAGAAAGAACCTGCGTGTGGTAgTTGAAGGCATCCAGACAATTAAAGTAAGGAGCTTTGTGCTCAACCCCTCGGAGAAAGGAGACAGCGCTGGTAAACAACAGATAGAAGTGGAAAAGATGCAGTTGGACGCCGTTGTGCCCAAATCTGTGCCGGAGACATTTGTCAATGTCAGAGGTGATTTGCTGGCAGACAGCATTGATAACTCTATTAAGGAGGACTCTCTGGCAGCGTTGATCCGGATGCCCGGTGGATGTGTGGAGCAGAACCTGGCCAGAATCACGCTGCCCCTCATTGCCACCCATTACCTGGACAGCAGTGGAAACTGGGACGCTGTGGGAGTAGATCGCAGACAAGAGGCCATCAAATACATCCAGACAGGGTATGAAAATCAGCTTAACTACCGGAAAAAGGATGACTCGTATCCTCCCTACGCCAAAGAGGGGACCAGCACATGGATCACTGCATACGTGGTGAAGGTTTTCTCCATGGCAAAATCATTTATAAGCATCAATGACAAGCATCTGTGTGGCCCTCTGGTGTACCTCCTCAAGAATAAACAGCGTCCTGATGGATCCTTTCAGGAGGACAATCCTGTCTATGACACCAGTATGACGGGAGGCCTTCAAGGCTCTGAATCCAGAGTGTCTCTGACCTCATTCGTGCTCATTGCTTTGGCAGAGGCACAAAATGCTGTTACCTGCCAAGAGCCAGATCTTGACATAAAGGACCAATTCAGAAAAGCAGCCTTGTACATAAAAGAGCATTACCCCCGGGTGAAGAGACCATACACAGCAGCTATAGCATGCTACGCTTTAGCGGTATCCAACTATGGCTGCATGAAGAGCACGTTACTAAATTTAGCATCACCTGATCGAACCCACTGGCCTGACTCTATTAATTATTTCTTCACGCTGGAAGCTACTGGCTATGCGTTGTTAGCTCTGATCAAAGGTGGCCACATGGAAGAGGCAGCCGTCCCCTTTCGATGGCTGAACGAGAAGCGTGGCATTGGAGGAGGATACGGCTCAACTCAGTCCACTATGGTGGTGCTACAGGCTCTGTCTGAATACCTGGTGAAAAGGCCTCCTCCTGAAGATCTCAATCTGTTGGTGGAGCTCAGTGTTCCTGGTCGCAGTGACATACGCTGGACCTTCAATCCAAAAATGGCACATGTGGCCCGATCTTCAAGGGTACCTCTTGACCAGACATTCACAGTGGAGGCTTCTGGGAAGGGCAAGGGTATTTTGGAGGTAGTGACGGTGTACCACCAGCTTCCTGATGTGTATGAGAACAGCACATGTAACGGCTTTCATCTGGACGTCTCCATCGCTGAGACTAGTGaaaaaccaCCATCAGATGTAGAAAAGTCATACAGACTTAATATCAGCGTGAGGGCTCTGGAGGGACGGCAGGTGAGGATGGTGATTCTGGACATCAGTCTGCCCACCGGCTTTGAGCCTGAAAACTCAGATTTAGAATTGCTCTCAAATTCAGTGGATCGCTACATCAACAACTTTCAAGTGGTGGACAACCTGAGTGACAGAGGATCCCTCATAATTCACCTGTTTAGGGTATCCAGTACTCAGACAGACACAATCACATTCAGACTGCATCAGAAATTTAAAGTGGGTCTCCTTCAGCCCTCCACTGTCACAGTGTACCAGTACTACAACAAAGATAAACGCTGTAGCAGGTTCTACTCTCCTCCAGAAGACAAAGAGCAGCTTGATCAAATCTGCAAAGACAACGTGTGTCGCTGCTCTCACGGTGACTGTTGTGTAATGAAGGAGGACTCCTCATCTTTCAGTACAAAACAGAGGAAGGCCACTGTGTGCAATGGATTGCATCATGTCTACAGGGTCAAGCTGATCAGCGTCAGCCAGAGTCACTACGACCAGTTTGAGATGGAGATTGTGCAGGTTATCAAAGAGGggTCAGAGGAAGGCCTGAACGAGAATGAAAGGAGGACGTTCCTCTCTCATGCGAGCTGTAGGACAGGACTTGGTTTGAGAGAGGGTCAGGACTATCTGATCATTGGGCCCATCAGAGATGTTTGGCACGCAGGGAGCACGTCCAACAAATTTGTGTATATGCTGGGTAAGGACACGTGGGTCGAGCGCTGGCCGTCTGAATCTGAATGTGGAGCTGGATCTGCACTGGAAAGGAAATGTGCCGAGTTGGAGAGCTTTGCAAAGGACCTGTCAGAAAGCGGCTGTCAAACTTAATGTGTttagtttatagtttataatGTGTTTAGTTTATAGTTTCAAGTATAGAAGGCAACATTGTCAAAACAATAAAGTCTAAAAGCAATGTA

Function

GO:

id name namespace
GO:0005615 extracellular space cellular_component
GO:0004866 endopeptidase inhibitor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225514 lncRNA downstream 71189 12544901 ~ 12545127 (-) True G152351
TU225498 lncRNA downstream 136864 12474768 ~ 12479452 (-) True G152341
TU225496 lncRNA downstream 181360 12434581 ~ 12434956 (-) True G152340
TU225495 lncRNA downstream 189344 12426756 ~ 12426972 (-) True G152339
TU225488 lncRNA downstream 190228 12418358 ~ 12426088 (-) True G152333
TU225573 lncRNA upstream 49095 12683090 ~ 12683385 (-) True G152363
TU225597 lncRNA upstream 114227 12748222 ~ 12748440 (-) True G152386
XR_006247716.1 lncRNA upstream 310299 12944294 ~ 12953144 (-) False LOC122327774
XR_006247715.1 lncRNA upstream 310299 12944294 ~ 12953140 (-) False LOC122327774
TU225669 lncRNA upstream 310437 12944432 ~ 12951901 (-) True LOC122327774
XM_043223117.1 mRNA downstream 788 12598143 ~ 12615528 (-) True LOC122327651
XM_043223120.1 mRNA downstream 19851 12578511 ~ 12596465 (-) True LOC122327653
XM_043223121.1 mRNA downstream 21741 12578511 ~ 12594575 (-) False LOC122327653
XM_043223894.1 mRNA downstream 47589 12560843 ~ 12568727 (-) True LOC122328185
XM_043223892.1 mRNA downstream 47602 12560843 ~ 12568714 (-) False LOC122328185
XM_043223123.1 mRNA upstream 975 12634970 ~ 12641329 (-) True yju2b
XM_043223122.1 mRNA upstream 975 12634970 ~ 12641257 (-) False yju2b
XM_043222258.1 mRNA upstream 16203 12650198 ~ 12653608 (-) True wdr83
XM_043223531.1 mRNA upstream 19946 12653941 ~ 12658148 (-) True sde2
XM_043222507.1 mRNA upstream 25179 12659174 ~ 12670694 (-) False capn1b
TU225529 other downstream 48971 12560873 ~ 12567345 (-) False LOC122328185
TU225397 other downstream 470741 12142842 ~ 12145575 (-) True G152276
TU225293 other downstream 566785 12045469 ~ 12049531 (-) True si:ch211-117l17.6
unassigned_transcript_2544 other downstream 1267865 11348380 ~ 11348451 (-) True trnaq-uug_21
XR_006247708.1 other downstream 1427638 11179704 ~ 11188678 (-) False rex1bd
TU225672 other upstream 272154 12906149 ~ 12914226 (-) False cxcl12b
TU225673 other upstream 272252 12906247 ~ 12914226 (-) False cxcl12b
TU225939 other upstream 943806 13577801 ~ 13689607 (-) False LOC122327865
XR_006247594.1 other upstream 1191374 13825369 ~ 13829699 (-) False adra2a
XR_006247564.1 other upstream 1763383 14397378 ~ 14425100 (-) False LOC122327056

Expression Profile