RNA id: XM_043223130.1


Basic Information

Item Value
RNA id XM_043223130.1
length 4961
RNA type mRNA
GC content 0.45
exon number 7
gene id srfa
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 17353817 ~ 17369897 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGTACAGACGTTACAGCAGGTGACTAGTTCTGTTAGCGGATGTACATTTGAAGCACGGTCGCGATTCGTTGTTTCCAAATGTGGCAAGCGCAGCGTAAGTTCAGTTGAGGTTTGATTGATGGACTGTAGGCGGAAACTATACGCTGTAAACTTTGTACGATGGTCGTAAAGGGCTAGTTTTTGgaggtttgtttttgaaaatcacGAGCCGCTTAAATCGCGACTTTCAAATAGAGAAATATATCCGTCCTCAAACTCCGGATACCGCGCGTTTTGACTGACGAGTTTAGCTAATGTTTCCTAGCCTAGCATATGTGAGGTAAGTTCGGTATCGAGGGAAGCGATCTGCTGGGTTTGATCTGGGATCTGCTCGGATCTCAACACCTTACCGCGGGCGATGTTAGGGGGAAACGGGACGGCCAGAGGGGCCGGGCGCTCCGGTAACGGCACGGGGTTGACCCCTCTACAGGTGGGCAGCACATCTGGGGCTCTTGGGGTGGTAAACTCTACCATAAACCTGCCCGACGGGGGCAGATACGACGATAGGCCGTCGGTGGAGGCTGTGCTGAGCGGCTCCGACGGAGACTCGGACTCCGGGGACGATGAGGAGAGTCCCGTGGTGGACAGGAGAGGGGTAAAGCGGGAGAGGAGCGAGATGGAGGTCGGCGGATTTTCGGGATCTCACGCGGGACTGTCGGCGGCATACGGAGGGGTTTCCACCGGTGTGGCCGGTGCCAAACCGGGCAAGAAAACGCGAGGACGTGTGAAAATTAAGATGGAGTTTATTGACAACAAGCTGAGGAGGTACACGACCTTCAGCAAGAGAAAGACTGGGATTATGAAGAAGGACATGATGAAGCCGACGTTCACGGCTGTCTCTTTACCCGGAGGAGGCACCAACACCAACAGCACCACCACGCAGTCATCAGCCTCGTCCTCTCCCTCCTCGTCATCCGTCTCCATGCACACTCAGAGCGGCGCCACCTGCTGGCCCGTGGCCGCGGGCATGAACGCTCAGAGCGTCTCCAGCGCCAACGGGACGGTGCTCAAGAGCTCTCCTGCGGGGGTCATGCAGCTGCCCGGCGGGTTCACGCTCATGCCAGGCGCTTCTCTTCCTCCCGGCACACACACTATTCCTCTCAGTCAGCTGCAGACACACTCTCTGGCCATACAGTGTCCACAGACGCAcagcggcagcagcagcagctcgtCGTCCTCGGGCTCTGTccccgcacacacacaggccagCTCACAGGCCACGCTCTTCCGGCTGCCGGCCGCCGTCTCGCTCACAGgTGGCGCAATGCCTCAACAGTTACAAGCCATCCAGGTTCACCCCAGTCCTCAAAGCAGTGACAGCAGTCCAGAGATCGGCCAGACCTCCACCAGCTCCACTGCGAGCCACACCGCTACGATAGTCACTTCCACAGTGCCTTCTTCAGTGACGGGTCACATGATGTACCCTGGAGCGCACGTCATGTACGCTACATCCACCCCTACCCTTGCCGACGGGGGTCTGACTGTGCTCAATACCTTCCCACAAGCCCCTACCACCATGCACGTGTCCCACACGCCAGCCCAAGACTCAGGTGCAGTTCCTCAGATGTTTCTCACAGCACCTCCTGGAACTGTACAGATCCCGGTTTCAGCCGTTCCACTACATTCGATGTTAATAAACCAGCAGCCCACCGGTAGCAGCGGCACCACCCTCACAGAGCTGCGGGTGGTCAATATGGACAATCCCAAAGGAGACTGAGCCGTAAGCCACGAGGCCGGTGTGACCGCTCTTTCACACCGATATTCCAGGGATCACTCATGCCATGCAATCAGACTGCCATTGTATTTATTACTGCCTTCTCAAACCCTTCACGTACGTCTACGGTGAGGTGCGACGGGGCGTTTGAAGGACGAGCGCGTCTCCTCGCGGGCTCGCTCCGGTGGGTAGTGTGATAATGGACGATCTTTGTTCACGCGCATCTGTACTTCAGGATTTCATAGAGACATCTGCACTATCGCTGCCGGGTCTTCACCGGTTTCTCCAGAAAGATGTACGATTACGGTCACTTTGAGTACATTCGAACCTTTTCGATCttcatttcagtctttttttttttttttttttttttttttttttcttgatctGATTTGTAGTTCGTTTTCTCAAACGGAGAGTTTGTGAAATCAGTTCTTTGGTATGGTTTCGGTTGTTATTTATCGGATTTTTCGCTCTGAAAGGACGACCCTGTCATCTTCAAATGCAAAAGTCCAACCTTCTTTCCATTTTAAGTAAATGGCGACTGATGCGCTCGAGCTCCAAGCATCCCCTTTTTGAAAAATAGGTTTATTTTCTTGTtcgtttgtcatttttttcgAGCTCAGTAGCATTCGTTCCCATTTATAAGCATCACCGGACTTGGAAATTATGAGCGAACTTGCTCTAAAAAGTAATGCTGGATACTCTTGCACTGCCATCAGCACTCGCTAGGGGCTTCATGTACGATCTGAATTCatcatttcttaaaaacaccATTTTCTCATCTCTATGGCCTTTTTTTCAATTCAGGCGACCCTCCGCTGGGAGTTTGATGgacaggcgatctgaccaatcGTAACGGAACATTCGACCAATTCCAAATCACACACATTTTCGTCGGTAGATGTCTTTTTGCGATttgaattcatgtttatttagttCCATAACtagtaaatatgaaaagaccATCCGTTCACATGTTGATCCGAGGCGACAAATTGAATTTTcgatttttaatttcttaataaatgacaaaatttctTACTAAAGAGACCCTTGCTCTCGTCTTGCGCGTCGATATTTTCCTCTTTTGTGCCGCGTTTTTTGCGAAGGGTCGATTACAAGTTATTGAATAACTCGAATGAATCCGATTTATTTCGATGCGCTGCTATCATTTGGATTTAAACGCGATCCGTACTGCAAAAAAAGATTGCATGTCATTCCGTGTTGCAATGCTGTGCCAAACTATACTGTACGTAGAAGTCGATTTTTCTGCTTCGAGTCTTCACGTGCTTTCACTTTTTACGATGCTGTAAGAGAAAAACACTGACTTGCGTTTGCACTGCACGACAACGTACCGGAAACGGCGGTGCTGCGCGAATAAATGATGCGGATTGCGTTCTCACGACTCGTTTAGTCGTCCGAAATATTAAAATACGCGACGGATCCGCTACTAGGTACTAGAATGGCTTTTTTTGTTCGAAAACCACTTATTCTCACTCAAATCAAACGCAGTAAGTGTTTATACGTGCACCCGTATATCAATATCGTACGTTTTCTCTTTTATTCGTCACcgtttattttttgaatatttcgTTCGGATTTCTCACGACATCCAAAGGGCTGTAAATCTCAACGCGCCGACGACTGGTTTGGTTTTTCTCCGCCGATTTCCCTCATTCAGACGGCAAGCTTGGACCATAAAGCCTTTTTCTCGTACTGTTAAACGGATTTAAACGGACCACGGCAATACAGAGAGTTTCAGGAAATGACGTCGTCTCTTTTTTGTGGATTTTCAGTTCGGGGAGCTGAGCACAACACGTTGATAacgaatggaaaaaaaaaatattgtgggATTTATGAAGCGGCCAGAACAAAAGTATTTGACTGTTTTCTTCAGTATTAAAGTCCAGGGGAAAGCTTTCTTGAGTTGTTTATTATGTTCTTGGGTGAATTGCATGAATGCTTTCAAGAACTTAtccaggtcatatttcactcccaaccaaaatatttttttgtgcgcgcgtgtgtggaTTATTACAGgaatatttcaccaaaaataaaagaattgcTTAATGTACTCCCGCTCAGGcttcatccaagatgtagatgattttgtttctttatcagatttagagaaatgtggcattacatcatttgctcaccgatgctctgcagtgaatgggtgccgtcagaatgagggtctgattaaaaacatcacggGAACCTGTCCATCAGTTACTGTCTCATGAAGTGAGTGCAGGaaacaaatacatgcattttaaaccttttgctctcattctgacggcacccattcgctgcagatcGTCCAccggtgagcaaatgatgtaacGCTGCATTTCCTCctggtgaaatattcctttaaatatttgcTGTTGCTTGTCTTAAGACatttaaaccactttttttCGCTCGGTTATGATTCAGAAACAATTATAAATTGCAAGGTGGTTAAATATCGCTAGTACTtgttaaaaaagcttttaattaatgaacgtcatatttttactgtgttaCAGTAATAATCACGTTACGGAGATATTTATATTAGGAATATTCACtattttcaacaacaacaaaaaaaaccttattggTTTTGCTTTATGTGAAGTATTattctcattatttttaaaacattttgagtgaaatatgaCCTGTTTGTTTGACTCTTTATATCGGCCCTGATAGTATGAAATTGTGTAAACACTAGAAGAAAGTGTTGAATGTACCATACTGCATATGGCCCTTATTGTACATAATCTGATTTCTGACTTTAACAAACTGTAAGTAGCTCATACGGCTGcgtttgaaattaaaatatttctgcaCCCTGGATATATTCAGTGGACtgtatatattagttttaatgtGAAGCACAGACGTCGGTCagtgctggggtttttttttttctctctctctttcctttagCAGTGTAACCAGTCACGGGcaaaatgtttgctttgtttatcATCTTCTACAGTGCCATTTTCTGAAGaattaggttttgttttgttagatttgtttttgtattacatGCTGGGTaagttttaatttgattaaaatttaaGTACAAACTATGAATACGAAATCCTGCTTTAACCGCTAATGCGTTCTTGTAATGGAAATGCTGTAACGTATAGAGCTTTCTTTTGTAATAAAAGAAAGGTTTGAGAATAATTTTGCACA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227415 lncRNA upstream 280881 17072514 ~ 17072936 (+) True G153610
TU227383 lncRNA upstream 548209 16805182 ~ 16805608 (+) True G153583
TU227369 lncRNA upstream 594237 16759145 ~ 16759580 (+) True G153569
TU227368 lncRNA upstream 595690 16757795 ~ 16758127 (+) True G153568
TU227279 lncRNA upstream 787147 16566052 ~ 16566670 (+) True G153504
TU227465 lncRNA downstream 49827 17419724 ~ 17419944 (+) True G153645
TU227470 lncRNA downstream 71976 17441873 ~ 17442179 (+) True G153647
TU227476 lncRNA downstream 102003 17471900 ~ 17472846 (+) True G153653
TU227477 lncRNA downstream 103344 17473241 ~ 17474600 (+) True G153654
TU227589 lncRNA downstream 513716 17883613 ~ 17883921 (+) True G153737
XM_043222369.1 mRNA upstream 283850 17040662 ~ 17069967 (+) True dag1
XM_043222370.1 mRNA upstream 283850 17040662 ~ 17069967 (+) False dag1
XM_043223197.1 mRNA upstream 596887 16752903 ~ 16756930 (+) True rbm15b
XM_043223198.1 mRNA upstream 601063 16750713 ~ 16752754 (+) True manf
XM_043222468.1 mRNA upstream 603889 16600689 ~ 16749928 (+) False dock3
XM_043223415.1 mRNA downstream 1258 17371155 ~ 17388079 (+) True rnf13
XM_043223414.1 mRNA downstream 1259 17371156 ~ 17388079 (+) False rnf13
XM_043223184.1 mRNA downstream 29408 17399305 ~ 17419244 (+) True tsc22d2
XM_043223185.1 mRNA downstream 29409 17399306 ~ 17419244 (+) False tsc22d2
XM_043223358.1 mRNA downstream 52221 17422118 ~ 17438914 (+) True rubcn
XR_006247623.1 other upstream 607742 16600632 ~ 16746075 (+) False dock3
TU227194 other upstream 854404 16493702 ~ 16499413 (+) True G153432
TU227165 other upstream 967641 16317461 ~ 16386176 (+) False rpl32
unassigned_transcript_2576 other upstream 1203973 16149772 ~ 16149844 (+) True trnaa-agc_28
unassigned_transcript_2572 other upstream 1206680 16147065 ~ 16147137 (+) True trnaa-agc_27
TU227461 other downstream 45556 17415453 ~ 17419233 (+) False tsc22d2
TU227593 other downstream 556454 17926351 ~ 17927244 (+) True G153741

Expression Profile