Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043223195.1 |
| length | 1301 |
| RNA type | mRNA |
| GC content | 0.55 |
| exon number | 9 |
| gene id | sec13 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056720.1 |
| NCBI id | CM032089.1 |
| chromosome length | 18002998 |
| location | 16329725 ~ 16337118 (+) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | biological_process |
| GO:0070278 | extracellular matrix constituent secretion | biological_process |
| GO:0042462 | eye photoreceptor cell development | biological_process |
| GO:0036372 | opsin transport | biological_process |
| GO:0051216 | cartilage development | biological_process |
| GO:0007029 | endoplasmic reticulum organization | biological_process |
| GO:0001889 | liver development | biological_process |
| GO:0055123 | digestive system development | biological_process |
| GO:0010842 | retina layer formation | biological_process |
| GO:0070971 | endoplasmic reticulum exit site | cellular_component |
| id | description |
|---|---|
| K14004 | SEC13; protein transport protein SEC13 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU227140 | lncRNA | upstream | 24075 | 16303731 ~ 16305650 (+) | True | G153399 |
| TU227077 | lncRNA | upstream | 78752 | 16250440 ~ 16250973 (+) | True | G153364 |
| TU227043 | lncRNA | upstream | 158257 | 16170893 ~ 16171468 (+) | False | LOC122327131 |
| TU227040 | lncRNA | upstream | 161604 | 16163383 ~ 16168121 (+) | False | LOC122327131 |
| TU227176 | lncRNA | downstream | 83534 | 16420652 ~ 16481470 (+) | True | G153418 |
| TU227196 | lncRNA | downstream | 164636 | 16501754 ~ 16502104 (+) | True | G153434 |
| XR_006247619.1 | lncRNA | downstream | 185512 | 16522630 ~ 16526785 (+) | True | LOC122327176 |
| TU227198 | lncRNA | downstream | 185615 | 16522733 ~ 16526808 (+) | False | LOC122327176 |
| XR_006247769.1 | lncRNA | downstream | 197901 | 16535019 ~ 16545350 (+) | True | LOC122328065 |
| XM_043222222.1 | mRNA | upstream | 10347 | 16317387 ~ 16319378 (+) | True | rpl32 |
| XM_043223756.1 | mRNA | upstream | 85183 | 16241163 ~ 16244542 (+) | True | LOC122328055 |
| XM_043223757.1 | mRNA | upstream | 85183 | 16241163 ~ 16244542 (+) | False | LOC122328055 |
| XM_043223165.1 | mRNA | upstream | 92704 | 16233607 ~ 16237021 (+) | True | LOC122327679 |
| XM_043222314.1 | mRNA | upstream | 158096 | 16163389 ~ 16171629 (+) | True | LOC122327131 |
| XM_043222445.1 | mRNA | downstream | 45067 | 16382185 ~ 16477611 (+) | False | grip2b |
| XM_043222444.1 | mRNA | downstream | 45068 | 16382186 ~ 16477611 (+) | True | grip2b |
| XM_043222472.1 | mRNA | downstream | 263512 | 16600630 ~ 16746196 (+) | False | dock3 |
| XM_043222473.1 | mRNA | downstream | 263516 | 16600634 ~ 16746142 (+) | False | dock3 |
| XM_043222470.1 | mRNA | downstream | 263532 | 16600650 ~ 16749928 (+) | False | dock3 |
| unassigned_transcript_2576 | other | upstream | 179881 | 16149772 ~ 16149844 (+) | True | trnaa-agc_28 |
| unassigned_transcript_2572 | other | upstream | 182588 | 16147065 ~ 16147137 (+) | True | trnaa-agc_27 |
| unassigned_transcript_2570 | other | upstream | 183973 | 16145680 ~ 16145752 (+) | True | trnaa-agc_26 |
| unassigned_transcript_2563 | other | upstream | 190803 | 16138850 ~ 16138922 (+) | True | trnaa-agc_25 |
| unassigned_transcript_2559 | other | upstream | 193533 | 16136120 ~ 16136192 (+) | True | trnaa-agc_24 |
| TU227194 | other | downstream | 156584 | 16493702 ~ 16499413 (+) | True | G153432 |
| XR_006247623.1 | other | downstream | 263514 | 16600632 ~ 16746075 (+) | False | dock3 |
| TU227461 | other | downstream | 1078335 | 17415453 ~ 17419233 (+) | False | tsc22d2 |
| TU227593 | other | downstream | 1589233 | 17926351 ~ 17927244 (+) | True | G153741 |
