RNA id: XM_043223198.1


Basic Information

Item Value
RNA id XM_043223198.1
length 1050
RNA type mRNA
GC content 0.49
exon number 4
gene id manf
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 16750713 ~ 16752754 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGGCGGGCCCTTGCGATAGGAAGCGCTGTTGAATCGTTCCGTTGCGTGTTGTCGAGCCGGTATCTTTAATGATCGCTCGAAACCAGGTTTATCGCTTTTTTCGTAGCGCATTTAAGTAGTTAGACGCGTGTGTTTGGTTTTAGGATGATATATTTAAGCGGGCTTTCCGTGGCCCTGGCCCTGGCTCTGGTGCCGAGCTGCACAGAAGCTCTGAAGGATGGAGAGTGTGAAGTCTGTGTGGGTTTCCTGCAGCGCTTTCACCAGACGCTTCAAGACAACGACGTCCAGTTCAGCAGCGACTCCATCGAAAAGGCCCTGCTGAAGTCTTGCAAGGAGGCCAAAGGAAAAGAAAACCGATTTtgttaTTATATAGGGGCAACAAGCGACGCAGCGACAAAAATAATCAATGAAGTTTCCAAACCGATGAGTTACCATGTGCCGGTGGAAAAGATCTGTGAAAAGCTCAAAAAGAAGGACAGTCAAATCTGTGAACTCAAATACGATAAACAAGTGGACTTGAGCTCCGTCGACCTGAAGAAGCTGAAAGTGAAAGACCTGAAGAAGATTTTGGAGGAATGGGGCGAGTCCTGCAAAGGCTGCGTGGAGAAGTCCGACTTCATCCGTAAGATCAACGAGCTGATGCCCAGGTACGCTCCGAGCGCGGCCAGGGCACGGACAGATCTGTGAGGCCCCCGGGAGCCGCGGGGCCGAAGGACGATGAGCGAGCGCCTGACCGCGGGGCGTTTTAACACGTGCTCCGGGAGAACGTCAAGAAACCCAACGCACTTCCGTGAAAACACCACCTTTCGTTTATAAGTTGCCATGTGTTCGTTCCGACTAACGTCCAGCACGCCTCCTGACGCTGCGGGAAACCTGTCTGACACACTTGAGTTTGATTTTACTTTCTGTTCTTTATCTTTTGAGGGCGTAGACTTTCCTAGTTGGCACCTTATATGAAATCTTCAAGATGCGCGGGTCGGTTTGAGTGGActttgttgtaaaatgtttaatacagtTATACtgtctttttcattaaaagaacaaaagaa

Function

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process

KEGG:

id description
K22556 MANF, ARMET; mesencephalic astrocyte-derived neurotrophic factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227279 lncRNA upstream 184043 16566052 ~ 16566670 (+) True G153504
TU227275 lncRNA upstream 194103 16554933 ~ 16556610 (+) True G153501
TU227276 lncRNA upstream 194103 16554933 ~ 16556610 (+) False G153501
XR_006247770.1 lncRNA upstream 205363 16535019 ~ 16545350 (+) False LOC122328065
TU227368 lncRNA downstream 5041 16757795 ~ 16758127 (+) True G153568
TU227369 lncRNA downstream 6391 16759145 ~ 16759580 (+) True G153569
TU227383 lncRNA downstream 52428 16805182 ~ 16805608 (+) True G153583
TU227415 lncRNA downstream 319760 17072514 ~ 17072936 (+) True G153610
TU227465 lncRNA downstream 666970 17419724 ~ 17419944 (+) True G153645
XM_043222470.1 mRNA upstream 785 16600650 ~ 16749928 (+) False dock3
XM_043222469.1 mRNA upstream 785 16600661 ~ 16749928 (+) False dock3
XM_043222466.1 mRNA upstream 785 16600662 ~ 16749928 (+) True dock3
XM_043222464.1 mRNA upstream 785 16600689 ~ 16749928 (+) False dock3
XM_043222467.1 mRNA upstream 785 16600689 ~ 16749928 (+) False dock3
XM_043223197.1 mRNA downstream 149 16752903 ~ 16756930 (+) True rbm15b
XM_043222369.1 mRNA downstream 287908 17040662 ~ 17069967 (+) True dag1
XM_043222370.1 mRNA downstream 287908 17040662 ~ 17069967 (+) False dag1
XM_043223130.1 mRNA downstream 601063 17353817 ~ 17369897 (+) False srfa
XM_043223128.1 mRNA downstream 601108 17353862 ~ 17369897 (+) True srfa
XR_006247623.1 other upstream 4638 16600632 ~ 16746075 (+) False dock3
TU227194 other upstream 251300 16493702 ~ 16499413 (+) True G153432
TU227165 other upstream 364537 16317461 ~ 16386176 (+) False rpl32
unassigned_transcript_2576 other upstream 600869 16149772 ~ 16149844 (+) True trnaa-agc_28
unassigned_transcript_2572 other upstream 603576 16147065 ~ 16147137 (+) True trnaa-agc_27
TU227461 other downstream 662699 17415453 ~ 17419233 (+) False tsc22d2
TU227593 other downstream 1173597 17926351 ~ 17927244 (+) True G153741

Expression Profile