RNA id: XM_043223201.1


Basic Information

Item Value
RNA id XM_043223201.1
length 1615
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC122327695
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 13517128 ~ 13539026 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

catttcaaacGTACCATTGTTCTCCGTCCTGTTGTTTCTGAACGCAATAACGGCACGTTAGTTTGTGAAATCCTCGTGCTAAAGTCCCCCACCGGCACTTTCAGTTCCCCTTTAGCTTACGTGCAGCTGTAAACCCGCCTCAGAAAACCCAACAGCTTCACTTCCACTTTATTCAACTaatcactctctctgtctctgtctgtgagCGTCTGAAGAGCTTCGAATCCCGCGTCACCCAGCATGTCTCTCCCGCAACAGCTGCGCGACGAAAGTGATTTCGATCAGCTTCCAGACAACATTCCAGTCACTGCAACCATTGCCGATATTGAGGAAAAGAAAGGTTTCATTGTTTACTATAGGTTCGTAATTGAGGTGAAGACCAAAGGCAACAGTAAATACTTGATCTACAGAAGGTATCGTCAGTTCTTTGCCCTGCACCAGAGTTTGGAGCTTAAGTACTCAGCTGAAGCCCAGCCGGGATACTACACCTGCCAACTACCAACCCTGCCAGGTAAGGTGTTTATGGGGAACAAAAAAGAGATTGCAGAGAGCAGAATCCCAGAGCTCAACAATTACATGAAGAGGTTGCTTTGCCTGCCTACCTGGGTACTCTTGGATGATCTGATACGGATGTTTTTCTATCAGACCGAGTCGGACAGCCAACAGGTCCCCCGGGCCCTGCGCCGCCTGCGGCCCCCCACACGCAGAGTAAAAACTGTAAAGCCCAAAACGGACCTTCTCTCCGCACCCAGAGCAGAGgcGGTGTTTGACTTCAGTGGCAGCGGACGCCTGGAGCTCAGTCTGAAGGCTGGAGATGTGATCTTCCTCCTGCGAAGAGTCAACGCAGACTGGCTcgagGGCACAGTGAGAGACAAAACTGGAATCTTTCCCGAGTCGTTCGTGAATATTATTAAACCTCTTCCCGAGAGTGACTCTGATGAAGAGGGCGGAGCTTCCAAAAGCGGAAAACATACTCCGAGTTCATACAGCTGCCTGCGCTGCTATCTGCTGCAGCCAGAGGGCATCGACACaagGGACATTTGTGTTGAGGAAGATCTCTCCATTCAGCCATCTTACGAAGATCTGCTTTCCAGAATGAGGGATGTCTTTCAAGAGAAAGATATTGCTTTGAACTACCGGGACCCTGAGGGCGATCTGATACGGATATTAGACGATGAAGACGTCACCCTCATGGTGCAAGAGAGCAAACAGACGGGGTCAAAGGTTAAACGGCCCGTGAATCAGTTTCCCTGGGAGCTGCTGGTCACCCAGGCCAAAGATCTGACCGTCTACAGCACCGACTATTGAAACGAGCCGACGACGCAAACCGTTGCACAGAATTTCTTAGTTTACGTGGTTTTCAAATTGAAAACTGTTCATGTAGGGTTTACCCAATAATATGACAGATTTTATTGCGTTTACTCAACCTCGAATCATTTGTGGCTTTTGAAGCAGAATCGTTTGAACCAgtctaaatgattcatttatgaatCAGATTGAATTCACTGGTAATCACTGAAAATTAACAGCttaatcaacaaaaaaatttaatgactTTAGATCAgtgttattattaactattattattttttatatacagttcattaagattttt

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0007154 cell communication biological_process
GO:0005737 cytoplasm cellular_component
GO:0016175 superoxide-generating NAD(P)H oxidase activity molecular_function
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K08012 NCF4, P40PHOX; neutrophil cytosolic factor 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225837 lncRNA upstream 7876 13404842 ~ 13509252 (+) False baiap2l2b
TU225832 lncRNA upstream 10105 13404842 ~ 13507023 (+) False baiap2l2b
TU225833 lncRNA upstream 10105 13404842 ~ 13507023 (+) False baiap2l2b
TU225835 lncRNA upstream 10105 13504458 ~ 13507023 (+) False baiap2l2b
TU225853 lncRNA upstream 40620 13472195 ~ 13476508 (+) True G152571
TU225860 lncRNA downstream 1231 13540257 ~ 13540795 (+) True G152578
TU225880 lncRNA downstream 44759 13583785 ~ 13689603 (+) True G152585
XR_006247595.1 lncRNA downstream 112475 13651501 ~ 13653037 (+) True LOC122327079
XR_006247771.1 lncRNA downstream 114039 13653065 ~ 13653510 (+) True LOC122328069
TU225956 lncRNA downstream 263808 13802834 ~ 13803281 (+) True G152644
XM_043223199.1 mRNA upstream 10299 13498131 ~ 13506829 (+) False baiap2l2b
XM_043223200.1 mRNA upstream 10299 13502250 ~ 13506829 (+) True baiap2l2b
XM_043223400.1 mRNA upstream 19903 13480546 ~ 13497225 (+) True pla2g6
XM_043223401.1 mRNA upstream 19903 13480546 ~ 13497225 (+) False pla2g6
XM_043223402.1 mRNA upstream 19903 13480546 ~ 13497225 (+) False pla2g6
XM_043222319.1 mRNA downstream 2164 13541190 ~ 13548429 (+) True LOC122327135
XM_043222320.1 mRNA downstream 2164 13541190 ~ 13548429 (+) False LOC122327135
XM_043222321.1 mRNA downstream 2164 13541190 ~ 13548429 (+) False LOC122327135
XM_043222432.1 mRNA downstream 501695 14040721 ~ 14058580 (+) True LOC122327219
XM_043222305.1 mRNA downstream 532450 14071476 ~ 14078374 (+) True kcnip2
TU225846 other upstream 98721 13417464 ~ 13418407 (+) True G152565
TU225829 other upstream 133351 13383153 ~ 13383777 (+) True G152558
XR_006247608.1 other upstream 404395 13109819 ~ 13112733 (+) False LOC122327162
TU225879 other downstream 36712 13575738 ~ 13681947 (+) True G152584
XR_006247779.1 other downstream 428081 13967107 ~ 13967225 (+) True LOC122328230
TU226044 other downstream 501698 14040724 ~ 14042521 (+) False LOC122327219
TU226124 other downstream 919123 14458149 ~ 14462660 (+) True G152767
TU226184 other downstream 1147478 14686504 ~ 14691808 (+) True G152808

Expression Profile