RNA id: XM_043223255.1


Basic Information

Item Value
RNA id XM_043223255.1
length 3664
RNA type mRNA
GC content 0.54
exon number 20
gene id tle2a
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11353277 ~ 11381737 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGAATTTAACTCTTTGCTTCTGGTTACCACAAGCCaaacccctctctctctctctctctctctcttttttgcacAGGGGGGGCATGCGTTTCTCTTGAAGAAAACAACTCGCATGTCCCATTGAAACAGCTGAGGAGCCGAAAGGAAGGAGCGGatgaggggagagagagagagggagagagagagagagaagcagacaAAAGAAGCTGCGGCTGCGTTGAGCGTCGCGTCTTGGGAGCACGATAGCTGGCCGTCCGCTtggtttctttattattttcatcagTAAAACGCATCAAGGGCGGGGGAGCTCCGAAGGCCGAAAGCGTGCGTTCTGATATTTGGAGGTGCGTCGTAGCGAGGGACTCGGCACCGGACTGGGCGCATCTCGCATCGCGCGATAAAGCAGAACAAAGGGAGTCTTGAGCGAGGAATGCGCGAGCCGAGCCTGGCGCCGCCGAAACAGGGCCAAATGTTCTTCTGAGAGTCCGGCAGAAAGGCGCAAACTCTTCTGAAACGGCATTTAAGGCTACACCGAGACAGAAGACCCTCAAACCGCAACGAACCCGTTATTCGCCATGTTTCCCCAGAACCGACCCCCGGCACCTTTGCAGCCACCCCCTGGGTCCTCTGCTTCAGCTGCTGCAGCcgcagctgctgctgctgcagcgTCGGGGTCGACCCAACCTCTGAAACTTACTTACTCCGAGACCCTGGACCGCATAAAGGAGGAGTTCCAGTTCCTGCAGACACAGTATCACAGTCTGAAGTTGGAGTGTGAAAAGCTGGCCACAGAGAAGACAGAAATACAGAGACATTATGTCAtgtaTTATGAAATGTCCTATGGCCTCAACATAGAGATGCACAAACAGACGGAGATCGCCAAACGACTGAACGTGATTTGTGCCCAGCTCATTCCATTCCTGTCACAGGAGCACCAGCAGCAGGTGGTCCAGGCCATGGAGCGCGCCAAACAGCAACAGCTGCAGGCCCAGCACCTATCCCAGCATGCTGCCCAGGGGCTGCCCATGGCCCCTCACCCCTCTGGCCTGCCTCACCCGGGACTGGCTCTGGGGGGCGGCTCTGGGCTCCTGGCCCTTTCCGGGGCCCTTGGGGCCCAGCTGGCCTCTAAAGACGAACGAGCCCACTTGGAGGCCGTGGCAGCGGCGGCCGCAGCCGAACACCACAGAgactGGCCGCGGGGACGTTTACCTGCCCTTCCCATGATCCCCACAGACCGTGAACCTGGACCAAGTTCACTTTCTAACGGAGACAAAGGCAGGCCTTCAGACTACCTCAGCaatggaaaaaagagaaaagcagatGAGAAGGAGTTTATGACCGACTATGGAAGCGACGCGGAGAAGAGCGATGACAATTTGGTGGTTGACGAGGACCCTTCTTCTCCAAGGAGTGTGCAGTCGTACTCCTCCAGAGAGAACGGATTAGATAAACTCCCTCCTTCCCGTAAGGAGCCTCTGCCCCAGGCCAGTCCGACCTCGCTGGCTTCCTCCAGCAGCGCTGCTTCCCCTTCACGCAGCAAGGAGCCTCCACCGAGAGAGAAGTCCAGCACTCCGGGGATGAAGCCTGGCACGCCTATGTCCCAGGAGTCGTCCACCCCGGGCCCTAGCGTTCCTCCGCAGTTCCGCCCCGTTCCTGGGAAGCCAGGCGTTGACCCTCTTGCATTAGGTCTGAGGAACCCATTGGCGGTGCAGGGTGCGTACCCCCCAGGTGCATTTGGTCTTCCTCCCCCTGGAGTTAACGGCGAGTTGGCTGGAGCCGCAGGATACGGTGCCGGCCTTCACCTCGTCTCTCCTCAGATGAACGGCTCCGCtgctgccgccgccgccgctgctgcCGCCGCTGGATACGGTCGCTCGCCTGTGgTGGGCTACGAGTCTGCTCACCCCCATATGAGGGTACCAGGGTTACCCGCTAGCCTGCAGTCGGCAGCTTCTGGAAAACCAGCGTACTCGTTCCACGTGAGCGCAGATGGTCAAATGCAGCCGGTGCCCTTCCCTCCCGACGCCCTCCTCGGCCCCGGCATCCCGCGTCACGCCCGTCAGATCCACACCCTCAGTCATGGAGAGGTGGTGTGTGCGGTGACCATCAGCACCTCCACGCGTCACGTCTACACCGGCGGGAAAGGCTGCGTCAAAGTGTGGGACATCAGCCAACCGGGCAGCAAGAGCCCGATGGCCCAGCTGGACTGTTTGAATCGAGACAACTACATCCGGTCATGCAAGCTCCTTCCAGATGGGCGGACTTTGATAGTCGGGGGCGAGGCCAGCACGCTGTCAATCTGGGACTTGGCCACGCCCACTCCACGCATCAAGGCCGAATTGACGTCCTCGGCTCCGGCCTGCTACGCTCTGGCGATTAGTCCCGACAACAAGGTCTGCTTCTCCTGCTGCAGTGACGGAAACATCGTGGTCTGGGACCTGCACAACCAGACGCTCGTCAGGCAGTTCCAAGGTCACACAGATGGAGCCAGCTGTATCGATATTTCCAACGACGGGACCAAACTGTGGACGGGGGGTCTGGACAACACAGTGCGCTGCTGGGACCTGAGAGAGGGCCGACAGCTGCAGCAGCATGACTTCACCTCACAGATCTTTTCTCTGGGTTACTGTCCCACGGGCGAGTGGCTTGCAGTGGGGATGGAGAGCAGTAACGTGGAAGTGCTGCACGTCTCCAAACCAGACAAATACCAGCTGCACCTTCACGAAAGCTGCGTTCTCTCGCTCAAGTTTGCCTACTGcgGTAAATGGTTTGTAAGCACAGGCAAAGATAATCTACTGAATGCATGGCGAACTCCCTACGGATCAAGCATATTCCAGTCTAAGGAATCGTCGTCCGTCCTCAGCTGTGACATTTCTCCTGACGACCAGTTCATTGTCACTGGCTCAGGAGATAAGAAGGCTACTGTGTATGAAGTCATTTACTAAACTGAATGTGTTTGGAACGTCATTCATAAAACGAGAAAAACTGATTGGATGGAGACCAGATTCTTCATTATTTTGCCTTGAACTTGGGAGACAAAAGATGTGGCATGGACGTCAATATGGACTCTGAGACAGCGATATGGCTGTACTTTTCGACTCCaggatcagatggtggatcttCAGAACTGaccttgttgtttttttaatgctgtgaGGAAAGCTGGTAGACTAGCTTCAAAAAACATGGAATTTCTCCAAAGacctcttcttttcttcttctatctatctttctttttttttttttaaacaagatgaAACCTCTGTAGTGAATATAATAGTAAAagaaatcttatttttttagccTTCAGAATTTTCACGGAAATGGACAATTACGGAGCCACAGTGTATGAATGAATTATGACGAGACCTAAAGGACTGGCCTATGACTTCTTCGTCGATGATTTTCTTAAAAGCTGACCTGATCTCGGCTCCGTGTTTATGATTGTATGGATGATGTATAAGATGACGGACAACGATGTAGGACAAACGCGGCTCTGGATTTTAGTGTGTCATTGACTTCAGGGAAACGGTTATAAAGACACTCAGTTAACGTCCTATCACGTGAATACTGTATGTTGGAGCatgttgaaaattattttgacttTGGTCGCAAACTTGGTATGTATGAACTGTAAATAAAGCTCTTTAAAAGCCAAAATA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224634 lncRNA upstream 56126 11296908 ~ 11297153 (+) True G151815
TU224539 lncRNA upstream 170199 11182841 ~ 11183080 (+) True G151750
TU224475 lncRNA upstream 188951 11128526 ~ 11164328 (+) True G151707
XR_006247711.1 lncRNA upstream 212901 11128906 ~ 11140378 (+) True LOC122327758
TU224524 lncRNA upstream 276210 11075896 ~ 11077069 (+) True G151738
TU224646 lncRNA downstream 5895 11387632 ~ 11388850 (+) True G151820
TU224659 lncRNA downstream 45223 11426960 ~ 11427334 (+) True G151832
TU224669 lncRNA downstream 84126 11465863 ~ 11466334 (+) False G151841
TU224671 lncRNA downstream 84181 11465918 ~ 11466334 (+) False G151841
TU224670 lncRNA downstream 84680 11466417 ~ 11468274 (+) True G151841
XM_043223325.1 mRNA upstream 8265 11330705 ~ 11345014 (+) True plpp2b
XM_043223296.1 mRNA upstream 25049 11318107 ~ 11328230 (+) False mier2
XM_043223297.1 mRNA upstream 25049 11318139 ~ 11328230 (+) False mier2
XM_043223298.1 mRNA upstream 25049 11318692 ~ 11328230 (+) True mier2
XM_043223293.1 mRNA upstream 57756 11269192 ~ 11295523 (+) False shdb
XM_043223315.1 mRNA downstream 125724 11507461 ~ 11512935 (+) True LOC122327738
XM_043223316.1 mRNA downstream 125731 11507468 ~ 11512935 (+) False LOC122327738
XM_043223314.1 mRNA downstream 140267 11522004 ~ 11535741 (+) True LOC122327737
XM_043223313.1 mRNA downstream 140270 11522007 ~ 11532101 (+) False LOC122327737
XM_043223519.1 mRNA downstream 405849 11787586 ~ 11792458 (+) True LOC122327862
XR_006247707.1 other upstream 29339 11318689 ~ 11323940 (+) False mier2
TU224458 other upstream 431351 10919060 ~ 10921928 (+) False si:dkey-172o19.2
TU224353 other upstream 515914 10806052 ~ 10837365 (+) True G151620
TU224351 other upstream 515914 10816135 ~ 10837365 (+) False G151620
XR_006247780.1 other upstream 644169 10709044 ~ 10709110 (+) True LOC122328232
TU224828 other downstream 441197 11822934 ~ 11824055 (+) False LOC122327289
TU224831 other downstream 445607 11827344 ~ 11833374 (+) False LOC122327134
TU224905 other downstream 628732 12010469 ~ 12268139 (+) True LOC122327127
TU224911 other downstream 666681 12048418 ~ 12263031 (+) False LOC122327127
TU224914 other downstream 857045 12238782 ~ 12265692 (+) False LOC122327127

Expression Profile