RNA id: XM_043223257.1


Basic Information

Item Value
RNA id XM_043223257.1
length 5154
RNA type mRNA
GC content 0.49
exon number 20
gene id tle2b
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11382193 ~ 11426081 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATATTACAGTCTAGGGCTCGCTGCTGAAAAGCCTGCTGGATCTTCCAGTGACCTGCTGTTCTTTCCTgctttcctgtgtgtgtgttttttttttcctccctctctagatttagattaaaaacaaagcccGTTCCTCTTTCTCCTCGCCTTTTTAGACCTCAGCAAAAGAAGCCCTGTAGTTTTGGGGTACTGTTACGAGGTTGGAAGACTCGAATGGAGATACGCGTTTGTTTTTGTAGCTTGTTGGGGACATTTGCAGAAGGACGAGACCAGGGACAGCTGGACGCGTTTCTTCGGAATTCCCTGCTCCTCCGGCTCTCCTGATCTTTCGGACCGAGAGCCGGACGGTTAACGGGAGTGGGACGTCAGGGAATTCTtgtgggggggaaaaaaagtgtgaGTAAGGGGATCTGTTTTTGGAAGAGCCCCTCGTCGGATGCTCTGACAGCCTCCTTGCGGCTCGGAAAGAACAGAGCCGGGTTCCCGAGCTCGATCTGGGGCTCTGTCCCCTTGCGGAGGGGGGACGCAGGAGTACAGAGGGGTCAGCCCGTCGGCCGCAGAACCGAAAGCCGGCATCCCTCCGGTGACCATGTACCCGCAGGGTAGACACCCGgtACCTCTGCAGCCTGGACAGTCATTCAAGTTCACGGTGCTGGAGACTCTGGACCGCATTAAAGAAGAGTTCCAGTTCCTTCAGGCTCAGTACCACAGTCTGAAACTTGAGTGCGAGAAGTTGGCCAGCGAGAAGACGGAGATGCAGCGCCACTATATCATGTACTACGAGATGTCCTACGGGCTCAACATTGAGATGCACAAACAGGCGGAGATCGTGAAGCGACTCAGTGCTATCTGTGCTCAAATCATCCCTTTCCTCTCTCAGGAGCATCAACAGCAGGTTGTTCAGGCGGTGGAACGTGCCAAACAGGTCACCATGGCAGAGCTCAACGCCATCATAGGGcagcagctccagcACCTGTCTCACCACACTCCGGGTATCCCTCTCACTCCTCACCCTTCAGGTCTGTCTCTGGGCGGCACGTCGGGGCTGCTGGCCCTCACCGGGGCCCTGGGAGTCTCAGCCCACCTGGCCAACAAGGACGAACGCAACCATCTAGACCCCGAGCACCTGCGAGAGGGTGCGCCCAGCAGGAGTAAATCAGTGTCGTCAACCGACAGCCAGGCGGCGGAGGATCGTCAGGGTCCTTCGGGGGTTTATCCCTCACAGACCAGCGATGCCAAACGGAGACGATGTGATGAGAAAGACGTCCTCCCGTCTCACTACGACAGTGACGGAGACAAGAGTGAGGACAATCTCGTAGTAGATGTGTCAAATGAGGAGCCGTCCTCTCCTGTAGGCAGTGGCCCTCTGTCTCCTCACGGGAACGGTTTGGATCGAGCCCCGACCCTGAGGAAAGAGCTCCCAGGATCCCCCAGTCCCCCTCTGGCCTCCCCACCACACAGCCCACCCCCTGGAAAAAACAAGGACACGGCACAAACAGAAAAATCTCAGTCGCCTTCCTCTAAATCAGGCAACTCCTCTCCCTCTCACCATGACCCTCTAACTCCTGGCCCACCGGGGCCCAGCACTTCCTGTTTACGCCTGGTCAACAAATCTGCCTCCTCGGCAGACCCTCTGGCTCTGCGGAGTCCCTTGACCATGACGCCCGGTTCTTACCCGGCTCACTTCGGGGTGGTGTCCCACGCCGGGCTTAACGGAGAGCTGGCCAGCCCGGGCGGCTTCGGAGGCTCGCTCACCCTCTCGCCCCAAATCAGTGCTGCAGCCAGTGCCTACACACGCAGCCCTATGGTAGCGTATGAATCCCGTTCACATCTTAGGCCCTCGGGGCTGTCCTCCTCTCTGCCTGGCTCGTCCGGTGGCAAGCCAGCGTACTCGTTCCACGTGAGCGCAGATGGTCAAATGCAGCCGGTGCCCTTCCCTCCCGACGCCCTCCTCGGCCCCGGCATCCCGCGTCACGCCCGTCAGATCCACACCCTCAGTCATGGAGAGGTGGTGTGTGCGGTGACCATCAGCACCTCCACGCGTCACGTCTACACCGGCGGGAAAGGCTGCGTCAAAGTGTGGGACATCAGCCAACCGGGCAGCAAGAGCCCGATGGCCCAGCTGGACTGTTTGAATCGAGACAACTACATCCGATCATGTAAGATTCTCCCGGATGGGCGGACTTTGATAGTCGGGGGCGAGGCCAGCACGCTGTCAATCTGGGACTTGGCCACGCCCACTCCACGCATCAAGGCCGAATTGACGTCCTCGGCTCCGGCCTGCTACGCTCTGGCGATTAGTCCCGACAACAAGGTCTGCTTCTCCTGCTGCAGTGACGGAAACATCGTGGTCTGGGACCTGCACAACCAGACGCTCGTCAGGCAGTTCCAAGGTCACACAGATGGAGCCAGCTGTATCGATATTTCCAACGACGGGACCAAACTGTGGACGGGGGGTCTGGACAACACAGTGCGCTGCTGGGACCTGAGAGAGGGCCGACAGCTGCAGCAGCATGACTTCACCTCACAGATCTTTTCTCTGGGTTACTGTCCCACGGGCGAGTGGCTTGCAGTGGGGATGGAGAGCAGTAACGTGGAAGTGCTGCACGTCTCCAAACCAGACAAATACCAGCTGCACCTTCACGAAAGCTGCGTTCTCTCGCTCAAGTTTGCCTACTGCGGAAAGTGGTTTGTGAGCACGGGAAAGGACAATCTGCTCAATGCATGGAGGACGCCGTATGGAGCCAGTATTTTCCAGTCAAAGGAGTCCTCGTCGGTCCTGAGCTGTGACGTCTCCCCGGATGACAAATATATTGTGACTGGTTCTGGGGATAAGAAAGCCACGGTGTACGAGGTGGTGTATTGAACACAAagatggacggacggatggatgaaCGTACAGCGCCAAGTATAAAACAATCGTGGAGGGCACGGCGGGCAACCACAGCTCTTCTGTTTGCAGTGCTTTCGTAACCATTTGAGAAATAGGTTTTGTTCAGAACGGCGTACTACCATACTGTTTTTATGTAGTAGGTATACTGTGCATATGAGATTTCTTTATACGTAAAATACAACAGTGCTGggtagtaactgattacatCTACAGTCTACATTACGAAATTAAGACTTCAAAATCTCCTAATCAGATTACAGTTACTTTAAGGATTACAGTATTACATATTAGTTACACAATGGCAgcaaatgatacatttaattacatttttggagttataatacaattaatacaacTAAAATAAGCAACCTAGATTACATTACTAACTGCAGTTTTCAGTAAATTATAATCAGTAATGCAATTTGTAACACATCCAGCACTGCAAGCTAATTTTTACCAAAATGTCCCGTATAAAATACTATGGGatacttcatttttattattgatcaCAATACAGAACAAAATACCCGATGCATTTTTTGTGACCCGTTGGGCAACAACTTAGGACTGAAGATGCACAACAAAGTGGATGGCTCTCGCTAAATTAAATGCGCAATAATGTAGCGTGCGACTATATAGCTTGCCATACTTACGTTCTTATTTTACATGTGCTTTTAGCTATTTTTTGAGATAGTACGTGGTACACAGTATACGCTGCATGCAGTGTGCTAGTGTTCCATTACGAGCGACGGTAAGCGGGGAGGTTTTAATTAGAAGAGTCTCTGAGCTAAAAGAGGAAGCCCTTACAGACAGCAGGTATTTATGGAGCTTCTACTTACAGAAACGCCAAAACCAGACAATCATTTCATTAGTTGCAAACTCTCTCCGTAAGGCGAGCGCAGCACCTTCCCTACAACGAGAAAAGACAGTTTGGAGGCTCCTGGCTCACTTTGGAGCATCTCCGGATGAACGCGATACGGGCGTACAAACAATTCTCCTTTCGCCTATCCAACCCAATTAGACATTCATGTGGCAAATCCCAGTCGAATTCTCCAACCTGCATTTAATTTCCTTCTTCCACAAGTCAGTGTCTAATGAGGAGCAAGGGTAAATCACGCAGGATTCGCGCGGCAAATATTCACAACCACGACCGTTCGGTTTTAATTCCTGCGGATTATCATACAGATGTTGCGCTCATTTGTGGTTTAATGCTCATTTTCATGTCATTAATTATCTTTTAGCTTTGCATGGGGAAATCTTTTCATGATTGTTCTGCTTCGGTGAGATGGAAATACCGAAACGTTCGAAAACCCCGTACGCTGTATTTCTTCAGGAACTGTTCGAATGTTTAAAGTTACGTGACTTTTAATGCGGGACAATTACAAAAATGGGCtccaaaaataatgtcattcaAAGATGCAGCATGGAACAGAGTGTCTTTATGAAggtaacatttatattattataggaTCGCAGACCTATTGCAATATCAGGAGCAGCAAATAATTAATAGGGATGTCATGCGattcatttgaatgcatttttttaattgatatcACCGAGTCTACATTTTCGCAAGAGGTCCTAACACAGAGCCCTGATGCACAACATCAATAACAAGAGCTGTGGTTGCCAACCTGACCAGGAGTGTTCAAGGAGAAACACTACAGGATTCATCCATCACATGCGCCAAACATCCTGCTgggaagactttttttttattattattaccgtTTCGTTTTGTTCGTTTTTCTTTTGATATATAAAGCTTTTCTCAGAACTCAGAAAATGGTTGGATGattcaaaccatttttgtttgtgaacAGAAGGAATTGTATCATTAggttctttctctttttttttttatgccgtTAGTAAGCAGTGTTACGACAGTGTTTTGATCAGTCTGTTTATTATGCAGAAAGtgcagtgtgtttatttttattttttttttcttgaatagCTAAAAATATGGCTGCCTGCAAACAGTGGCATTTGTCCGTTTCAAAGACAGGCCAGCTCTGCTGCACGATCGGTCTTTGACATTATGCTATCTGAATATCCGTATCTATCTATCCTTATATAACGCATTGTTTGTATACCGAGAACAATGTTCACCGTCACGATTTTGTTAAAGACGCTCTCTCTTGAAAGCCAAGGAACTTTTTTCGAAGGCATCGCTGTGATATCCCTGTAGCACTTCCCATGTGATGTAAAAGACGTGTACATTGACAAATTAAACTTGTGGTCATCTTTTGAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224733 lncRNA downstream 4134 11372129 ~ 11378059 (-) True G151870
TU224704 lncRNA downstream 84730 11297225 ~ 11297463 (-) True G151858
TU224584 lncRNA downstream 151090 11229986 ~ 11231103 (-) False cks2
TU224564 lncRNA downstream 196274 11184230 ~ 11185919 (-) True G151773
TU224566 lncRNA downstream 201803 11179922 ~ 11180390 (-) True G151775
TU224753 lncRNA upstream 39782 11465863 ~ 11466339 (-) False gna11a
TU224751 lncRNA upstream 39827 11465908 ~ 11467098 (-) False gna11a
TU224752 lncRNA upstream 40371 11466452 ~ 11467524 (-) False gna11a
TU224757 lncRNA upstream 63045 11489126 ~ 11489433 (-) False gna11a
XR_006247713.1 lncRNA upstream 64592 11490673 ~ 11492960 (-) True LOC122327760
XM_043223301.1 mRNA downstream 77006 11301565 ~ 11305187 (-) True s1pr3a
XM_043223250.1 mRNA downstream 116038 11249988 ~ 11266155 (-) False ankrd24
XM_043223249.1 mRNA downstream 118109 11249988 ~ 11264084 (-) False ankrd24
XM_043223248.1 mRNA downstream 118109 11249988 ~ 11264084 (-) True ankrd24
XM_043223251.1 mRNA downstream 118114 11249989 ~ 11264079 (-) False ankrd24
XM_043223336.1 mRNA upstream 14135 11440216 ~ 11465075 (-) True tle5
XM_043223335.1 mRNA upstream 14135 11440216 ~ 11465071 (-) False tle5
XM_043223309.1 mRNA upstream 39771 11465852 ~ 11490654 (-) False gna11a
XM_043223311.1 mRNA upstream 39771 11465852 ~ 11490654 (-) True gna11a
XM_043223308.1 mRNA upstream 39771 11465852 ~ 11490652 (-) False gna11a
unassigned_transcript_2544 other downstream 33742 11348380 ~ 11348451 (-) True trnaq-uug_21
XR_006247709.1 other downstream 193515 11174143 ~ 11188678 (-) False rex1bd
XR_006247708.1 other downstream 193515 11179704 ~ 11188678 (-) False rex1bd
TU224207 other downstream 959858 10419127 ~ 10422335 (-) True micos13
XR_006247701.1 other downstream 1060530 10286578 ~ 10321663 (-) False polrmt
TU225293 other upstream 619388 12045469 ~ 12049531 (-) True si:ch211-117l17.6
TU225397 other upstream 716761 12142842 ~ 12145575 (-) True G152276
TU225529 other upstream 1134792 12560873 ~ 12567345 (-) False LOC122328185
TU225672 other upstream 1480068 12906149 ~ 12914226 (-) False cxcl12b
TU225673 other upstream 1480166 12906247 ~ 12914226 (-) False cxcl12b

Expression Profile