RNA id: XM_043223264.1


Basic Information

Item Value
RNA id XM_043223264.1
length 3776
RNA type mRNA
GC content 0.46
exon number 14
gene id shc2
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11232735 ~ 11249556 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGCGTGTTTTAATGCTGTGCTATAACAGTCTGTTAGAATGAAAATATACGCTTTGTGCTCTCAGACGTGCTAAATGGCATTCAAGATCAGATTCATGCCACCTTTCCGGAACTCTTAGCAGCACAAGCTATTAGCATCATCGTTTTGATATTAGAAAGCGCTTAAGTTTATAGTGTTTAAGCATTTTGCAACTTCGCAAATATTGACGATTGTATATGCATTAGACCAGAAAACCGGTAACGTGATTGGGCATGTCAGGgtaggaggtgtgtgtgtgtgttactggtGTGGTTGGAGTGGTTTCTCTCACTCTTTGAGCTCAAACTTCACATCTCTTGACTCTTACAGGCTTTTACTCTTCCcctacatacaaataaataggtTTACATGCTTGTTTTGTGGCTTGATATAGAGCTGGCATTACAATCTGCAGCAGACAGCACTAGATTTGGCCTCCAGGAGGCAGAGGGCCAGTCCGAGAGAGTCCAGCGCTGGGGCCGCAGAGGGGAGTCCAGGGGGCTCTGGGAACTTCAGGATGAGCCGGAGGACCAGGGTGGAGGGAATGTGGCTGGGAGATAACTTCACCCAGAAGGGCAGCTTCATCAACAAGCCCTCGCAGGGGTGGCTGCACCCAGACAAAAAGATCAACGGTACGGGAGCTTCGTACATCGTCAGGtacatGGGCTGCATTGAGGTTCTGAAATCGATGAGATCTCTGGACTTCAGTACTAGGACACAGGTCACAAGGGAGGCCATCAACAGGTTATGTGAAGCTGTACCTGGAGGAAAAGCTGCCTGGAAGAAGAAAACCACCAATAAAACCCTCCAGTCTATCATGGGGAAGAGCAACCTACGTTTTGCTGGAATGAGCATCGGCGTCAACATCTCCATTGATGGCTTGAGTCTCCTCGTCCCCACCACAAGACAGGTGATTGCCCATCACCCCATGCAGTCCATATCTTTCGCCTCTGGTGGAGACTCGGATACACCCGATTATGTTGCTTACGTAGCCAAAGACCCCGTCAATCAAAGagCGTGTCACATCCTGGAGTGCTGTGACGGTCTGGCTCAGAATGTGATCAGTACCATCGGCCAGGCCTTCGAACTGCAGTTCAAACAGTACCTTCACAGCCCGCCCAAAGCCATCCCCACCATGGATAGGATCATACGAACAGAAGAGTCGGCGTGGGGTGAAGATGAGGAGTCTTCTGAGCACGATTACTACAACAGCATCCCAGGAAAGGAGCCTCCTGTGGGGGGAGTGGTGGACTCTAGGCTCAGGCCTCCTCCGGGCCTACTGGGTCACGTCCATACGCAACCACAGAGCAAAACCTCTCAGATGGGGTCACCGGCCAAAAGAGATGCAGGCAGCCTCCCTTCCGCCCACTTGTGTTATGAAGTACACTGGGACACGGAAAACAGCAGCAGCTCAACTTTGACTTCCGATGGTTACCTCCGAGCAGACGGTCATCCCACAGGCAGCCGAGATTACGAGGAACATCTGTATGTAAACACCCAGAATCTGGACAACATGGAGGCCTCAATGGACGGCCGAGGAGGACGCAGATCTGAGAGTccaaagaaagacatttttgataTGAGGCCATTTGAGGACGCACTGCGTCTACACGAGGCTGGAGGAGTTTGTGTGTTGGAGGACAAGTGGCCGAGTCCCCCGCGGCGCCGGGCCCCCGTCGCCCCCACGGAGGACCAGCTGAGGCGGGAGATGTGGTACCACGGCCGCATGAGCCGCAGGGACGCAGAGAACCTGCTGGGGCGAGATGGAGATTTCCTGGTGCGGGACAGCGCCACTAACCCGGGCCAGTATGTGCTGACGGGGATGCAGTGTGGGCTTCCCAAACATCTGCTATTGGTGGATCCTGAAGGAGTGGTTCGGACTAAAGACATGCTTTTTGAGAGCATCAGCCACCTGATCAACTACCACCTGACCAACAAGCTGCCGATTGTTGCAGCAGAGAGCGAGCTACACCTCCAGCAGGTGGTCTGCAGAAAGAAATGACTTTCATGTTGAAGCCCATATAGAGTATATGggtGGAAGGCCGTCCCCTGTGCCGCCAATCTAGAGGCCCCACACTATTGCCTTAAACAGACTCTGAGCTTCCACTGGGACTTGTGGGATATCGCTGTTCCTTAGGCACCGACCACAAACAGCTTTCGGCATGTCTTGCTCAATCCAACCCTTCTTCAGCAGAGAAGACCCCAACTGAGAGTTTGGCATTGGGAAATAAAGTGCTCGTGAACACTTTTTCCCAGCAGACTGTTCTTGGCATTGCCTGTCAGAAATGTGAACTTGTGTGAAACACATGAGACAAACCGTCTTCTTCTCTTCCGTGACATCCATACGAGCGCTCGTCGTCAGTGGGCTGTTGTTTCTAAATGTGATGTATTCAGTAACCGTgtctctgctcttctctgaTGGTCACCTCTGAGACTCTGGACATCATTGTGTTGTGCTTACAAGGGTTTGCTCTCAGGATGCAGTATTTGTTAAGGACGTTATATAAAGCTCATAAGCTCAGTCGCTCTAATGCCGTCGTATTAAATGCACATGTTTAATTTATGAACTCAGGACCAAACGATTGGGTCATGCTCATGTGATATTgccctttttttaaaaccctAGTGATTCACATATGCGTTATACTTCACAAATATTCCATTTCTCTGTTGTGTTCAGTCACAaacagatatgttttttttaaaggtgcattTAGTAGTTTGGTGCTAATAAAATCAGTTTGCTCATTTCACATAATTCGGTTCGCCCTGTGTGAATTTGCATCTATTCGCTATTGTCGGTAATCAATTTTACCTAGAACATTTTGATGCTAATTCGCTAATGCATCCCTTCGCTAATTTCGTTCATCATTCGCTAATTGCTCATCTTTTTGCATCCTTCACACAAAATTCTACAGTATTTTGCCGAATAGACTCTAAAATCTGTACAACCGAATTAAAAAAACGAGCGCAAACATGGCTGAACGTTTAACAGCATGTGGCTTTGGTACTTAAAAGTACACAAAAATCTAGCTAACTACTGAATGTACCTCaccttttttctgtttgtctggGCACAAAAATCaaccacaaacttttttttttaatacatttcaataaatagtTCTTAATGTCAAACGATCTTATTTCAACTTAAAAGCTGCTTTCTGGAGAATCGTCATTAACTGAAACCTGCTAATTATTCTGGTTATATAAAAAGGAGAGTCTGACTCAGTACAGTGTATAAAGAATCACGTTATTTCCCCCACTACCCAAAAAGAAGATTCCAGTGCCTTAAAAGTAATTATGTTTTACTTCAAAAACACCCTTCCACTTACTTAGGGTTTATGCATCCTAGTTTCTGTTATTAAGGTCAACAGCTGAATGCGTAATAGCAAAGCATGCTACTCTTACTATTTCAGCAATATTAGAATATGGCAGAAATAGAAAGAATAGCTAGGGTTTATCtagtttgcatattttaattagaatCAGATAATAGATGCTGTAGCCGCACTATTTGGCTTCAAAAAGCATAACATGAATCACAGATATTTCAGAAAGCATACTTACAGGGCTCTTGCTTCAGCCTAGCAACAGACATTGAGATAAATGTGAATTCTAGCAGTTAACTTTCCAGATATTCTAGACCTCATCGCCGCcaccaaaaaacactttattttctcaGGATGTTGTTTCTGTATGCTCTGATCTAAAAGCATTCTCAATAAAACTGAACAGGAAGGGAAAAGTTAAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224539 lncRNA upstream 49662 11182841 ~ 11183080 (+) True G151750
TU224475 lncRNA upstream 68414 11128526 ~ 11164328 (+) True G151707
XR_006247711.1 lncRNA upstream 92364 11128906 ~ 11140378 (+) True LOC122327758
TU224524 lncRNA upstream 155673 11075896 ~ 11077069 (+) True G151738
TU224471 lncRNA upstream 239714 10973022 ~ 10993028 (+) False peak3
TU224634 lncRNA downstream 47352 11296908 ~ 11297153 (+) True G151815
TU224632 lncRNA downstream 84613 11334169 ~ 11384582 (+) True G151813
TU224630 lncRNA downstream 116537 11366093 ~ 11384582 (+) False G151813
TU224646 lncRNA downstream 138076 11387632 ~ 11388850 (+) True G151820
TU224659 lncRNA downstream 177404 11426960 ~ 11427334 (+) True G151832
XM_043223327.1 mRNA upstream 2963 11226160 ~ 11229779 (+) True odf3l2b
XM_043223230.1 mRNA upstream 7223 11189852 ~ 11225519 (+) True cpamd8
XM_043223286.1 mRNA upstream 47655 11176508 ~ 11185087 (+) True crlf1b
XM_043223287.1 mRNA upstream 47655 11176510 ~ 11185087 (+) False crlf1b
XM_043223277.1 mRNA upstream 240638 10987836 ~ 10992104 (+) True peak3
XM_043223292.1 mRNA downstream 19392 11268948 ~ 11295523 (+) True shdb
XM_043223294.1 mRNA downstream 19392 11268948 ~ 11295523 (+) False shdb
XM_043223295.1 mRNA downstream 19401 11268957 ~ 11295523 (+) False shdb
XM_043223293.1 mRNA downstream 19636 11269192 ~ 11295523 (+) False shdb
XM_043223296.1 mRNA downstream 68551 11318107 ~ 11328230 (+) False mier2
TU224458 other upstream 310814 10919060 ~ 10921928 (+) False si:dkey-172o19.2
TU224353 other upstream 395377 10806052 ~ 10837365 (+) True G151620
TU224351 other upstream 395377 10816135 ~ 10837365 (+) False G151620
XR_006247780.1 other upstream 523632 10709044 ~ 10709110 (+) True LOC122328232
XR_006247720.1 other upstream 1239301 9970622 ~ 9993441 (+) False gatad2ab
XR_006247707.1 other downstream 69133 11318689 ~ 11323940 (+) False mier2
TU224828 other downstream 573378 11822934 ~ 11824055 (+) False LOC122327289
TU224831 other downstream 577788 11827344 ~ 11833374 (+) False LOC122327134
TU224905 other downstream 760913 12010469 ~ 12268139 (+) True LOC122327127
TU224911 other downstream 798862 12048418 ~ 12263031 (+) False LOC122327127

Expression Profile