RNA id: XM_043223274.1


Basic Information

Item Value
RNA id XM_043223274.1
length 2163
RNA type mRNA
GC content 0.52
exon number 12
gene id ell
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11031722 ~ 11061071 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTTCTCTCGCTCTAGCTGCTTGTTGCGTTCACGGCAGAGGCGCGTGAGCGTGGTGGGAAATGCAAGCAAGATGGCGGCGTTGAAGGAGGAGCAGTGCTACGGACTGTCCTGTGGAAGAGTGAGCAATGGCAGCAACATCTCCGTCTATCACGTCAAGCTGACTGACAGCGCGCTGCGAGCGTTTGAAGACTACCAGAGCAACAAGGGCCTGACTGCTAAACCACTAATAGGATTCACAGGAAACCAAGGGAAAATCTCAATACCGCAGTCAGAGAATCCAAATGAGCTGCGAACGTTTACGTTCTACCTGTCCAATGTGGGGAAGGACAATCCCCAGGGCAGCTTCGACTGCATTCAGCAGTATATTACAAGTGAAGGGAGCATACAGCTGGACTGCCTGGGAGGGATCCAGGACAAAATCACGGTGTGCGCCACGGACGACTCCTACCAGAAAGCCAGGCAAAGCATGGCTCAGGCCGAGGAGGAAACCCGCAGCCGCGGAGCCATCGTCATCAAGCCCGGCGGGAGATACGTGGgtaAACGTGTACAAATCCGGAAACCGATAATGGGTGTTTCGGATGTGGCACCTTCGCGGCGGACTTCACGGCCGGTCATCATCTCTAGCAGTCAGAAGAAGAGCCCGCCTCGGCCGCTGAGGGAACGGCTGGTGCATTTACTGGCCCTCAAACCCTACCGCAAAGCCGAACTCCTGGTGCGGCTCACCAAGGACGGCCTGTCTCCTCAGGACAAGGAGACGCTGGACAGCCTCCTGCAACAGGTGGCTAACCTGAATAGTAAGGACAACACCTTCACATTGAAGGATTGTTTGTTTAAGGAAGTTCAGAAGGACTGGCCTGGTTACACTGAGGTGGACCAGCAGATTCTAAAGAAGAGAATTCTTGTACGAAAACTGTGTAAGCCTCAGAGCAGTGGCCCTGTGTCTGGGGAGAGTCCGGTCAGCCCGCACAAAGAGCCAGCCAGCAGCTCGCCCTCTCAGAAACGACCTGCAGAGTTCATCGATCCCCTGGCCAATAAGAAACCCAGGATATCGCATCTAGCCAGCAAGTCTACGGGGCTCATCAATGGCAAACTGAGCTCGTCCAATGGGAAAGACTCTTCTAGTTCTCAATCAGCAGAGACGTCGTCGAGCTCCCACTTCCCTCCTTTGGAGATCCCCAGACCCTTCGACCCTCTTTCGGACGTCAGCAACGACTCCAACGGCCGAGACTGTGAAAGTCAGGAGGCGGCGGTGGCGGAGAGACTGAGTCAGCCCCCGTCGTTCGCCCCTCGCTCCACAACGCAAGAGGAAGGCCTGAGCTCCACGTCCCCGGCCCACAGCAGCCTGGACGGGTCTCAGACCCAGAGCACTCAACCCTCCTTGCATGGCAAGTCGAAGAAGAAGTCCAAGAAACACAAGGACAAAGACAAGTCCAAGGAGAAAGATAGGGACAGAGAGCGGGACATGAAGAAGGAGAGGAGGGTTGAAGAAGACCGTGGCTTGGATCAGAGGAAACCCTGTGACATCACGACGAGCGATAGGAGCCCAGGTCTGAACGGAACGTGCAACAGCTCCAGTATTCCTGCATCTTCGTCGGAGACGGCAGACTATTTATTAAAGTACACAGTGATAAGCTCGCAAGAGCAACGTCAGACTTACAAAAACGACTTCAACGCGGAGTACAGCGAGTACCGGGGCCTCCACTCGCGGATAGAGGGCATCACCCGACAGTTCACTATACTCGACTCTGAGCTCAAACAACTCCAGCAAGGCACAGACAAGTATAAGACAATCCACAATCAGATACTTGAAGAGTAtcgcaaaataaaaaagAAACGGTCTGAAAATGATGCACAAATTCAACGACGAATACGAATGACGTTTGTTTGGATTTGAAACCGCTACGATACGTTGAAATGAGGACGAGACAACTGGGGTTGGGATGTGCCAAATGACCTGTTGTATAGGTTTTGGATCGGATGAAATATGTTGctgttttagcaaaaaaaaaaaaaaaaatttaaaaaaaggaaattaaaggGAGTGGGAGGAGCTTTGGGACGAAGGCTTGATGTCAATGCTAAAACCCAAAGCACGCTTTTTGAAACAACAAGGGACTGGGACTGAAATTTATCTTGgtatttcaataaaattcttggaaaaa

Function

GO:

id name namespace
GO:0006368 transcription elongation from RNA polymerase II promoter biological_process
GO:0006414 translational elongation biological_process
GO:0001570 vasculogenesis biological_process
GO:0008023 transcription elongation factor complex cellular_component
GO:0003746 translation elongation factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224541 lncRNA downstream 36772 10935052 ~ 10994950 (-) True oaz1a
TU224465 lncRNA downstream 98301 10932994 ~ 10933421 (-) True G151704
TU224463 lncRNA downstream 99213 10930882 ~ 10932509 (-) True G151702
TU224427 lncRNA downstream 247480 10783638 ~ 10784242 (-) True G151668
TU224336 lncRNA downstream 315765 10715425 ~ 10715957 (-) True G151616
XR_006247712.1 lncRNA upstream 94716 11155787 ~ 11159729 (-) True LOC122327759
TU224565 lncRNA upstream 115492 11176563 ~ 11179432 (-) True G151774
TU224566 lncRNA upstream 118851 11179922 ~ 11180390 (-) True G151775
TU224564 lncRNA upstream 123159 11184230 ~ 11185919 (-) True G151773
TU224584 lncRNA upstream 168915 11229986 ~ 11231103 (-) False cks2
XM_043223244.1 mRNA downstream 3609 11003059 ~ 11028113 (-) True dot1l
XM_043223343.1 mRNA downstream 30736 10997306 ~ 11000986 (-) True amh
XM_043223332.1 mRNA downstream 36770 10991513 ~ 10994952 (-) False oaz1a
XM_043223329.1 mRNA downstream 47734 10981892 ~ 10983988 (-) True org
XM_043223330.1 mRNA downstream 47802 10981892 ~ 10983920 (-) False org
XM_043223299.1 mRNA upstream 1694 11062765 ~ 11075653 (-) True fkbp8
XM_043223307.1 mRNA upstream 16525 11077596 ~ 11128670 (-) True ssbp4
XM_043223317.1 mRNA upstream 101546 11162617 ~ 11175995 (-) True tmem59l
XM_043223341.1 mRNA upstream 125220 11186291 ~ 11188692 (-) True rex1bd
XM_043223340.1 mRNA upstream 125220 11186291 ~ 11188678 (-) False rex1bd
TU224207 other downstream 609387 10419127 ~ 10422335 (-) True micos13
XR_006247701.1 other downstream 710059 10286578 ~ 10321663 (-) False polrmt
TU224081 other downstream 1068096 9957811 ~ 9963626 (-) True G151425
TU223881 other downstream 1528716 9498680 ~ 9503006 (-) False gpx4a
XR_006247709.1 other upstream 113072 11174143 ~ 11188678 (-) False rex1bd
XR_006247708.1 other upstream 118633 11179704 ~ 11188678 (-) False rex1bd
unassigned_transcript_2544 other upstream 287309 11348380 ~ 11348451 (-) True trnaq-uug_21
TU225293 other upstream 984398 12045469 ~ 12049531 (-) True si:ch211-117l17.6
TU225397 other upstream 1081771 12142842 ~ 12145575 (-) True G152276

Expression Profile