RNA id: XM_043223278.1


Basic Information

Item Value
RNA id XM_043223278.1
length 2845
RNA type mRNA
GC content 0.50
exon number 9
gene id btbd2a
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10710570 ~ 10715160 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGTCTCACGCCATTTGCACATTTCGCACTTCCTagaatgaaaacatttccacGAGCACCTGCCTCCTTCTCCAACAAAAGCGCTGGCCGGAGAATAAAACGGCCACGTCCTAAACACGAAAGCTAAAAAGGCGAGAAGGCCAAGTCAATTAAAAGCGGCTCGACGATGTTCGAGTCTCTCGCGGGAAGGCAGTCATTTGGCCAGCGTTTCTGGTTATGCGCTGTTGTGTATGTTTATTCCAGCAAAGCCTGCAGTGTTCGCCATCCAAGATGGCTGCGGGTGAAAGCAACAGCCGATCCTCGTGCCTAAACCTGTCTAATTCGGGGCCGCTGGGCAATGCGCCGCCGAGCAACAGCGCCCACTCCTCACCCGCCAGCAACGGGGGAGCCGTGGCCGCAGCCGGGGGGGTGAACCGGAGCGCGGGGAACGCGAACCCCCGGTCGGGCCCGGAGAACGGCGGAGGCGCCGAGTCTGCGGTGAGGAGCGCCCCGAGCGCGCACAACCCTCCGCGGCAGTCGGTCGGTCCGAGCGGAGCGACTTCAGGCGCTGCGTCAAACATGACGGCgacaccatcatcatcatcctcctcatcctcgtCCACCGCATCCTCCGCCGCCGCCGACGCGTCCGCCGCCGTCGCCTCGCTTCCCAGCAGCCCGGCTTCGGTTTTGGTTTATCGAGAGCCGGTCTACAACTGGCAAGCGACAAAAAGTACAGTGAAAGAAaggtttgcatttttgtttaacaaCGAAGTGCTAAGTGACGTCCATTTTTTGGTTGGGAAGGGAATGGGAGTGCAGCGCATTCCAGCGCACAGATTTGCTCTCGCTGTGGGAAGTGCCGTGTTTGATGCCATGTTCAACGGTGGCATGGCAACAACGTCGACCGAAATTGAACTGCCAGATGTGGAACCGGCTGCATTTCTAGCCCTTCTCAAATTTTTATACTCCGATGAAGTGCAAATTGGACCGGAGACCGTCATGACCACGCTTTACACGGCCAAAAAGTACGCAGTACCGGCGCTCGAAGCCCACTGCGTCGAATTCTTGAAGAAAAACCTACGTGCTGACAATGCTTTCATGTTGCTTACCCAGGCACGGCTTTTTGACGAGCCCCAGCTGGCTAGTCTCTGTTTAGAGAATATCGACAAGAACACCGCTGATGCTCTAGCCGCCGAGGGATTTACGGATATCGACCTCGACACCCTTGTGGCGGTCCTGGAGAGAGACACGCTGGGTGTACGGGAAGTGCGTCTCTTCGGGGCTGCGGTTCGTTGGGCGGATGCTGAGGCCCAAAGGCAACAGTTGCAGCCCACGCCGGAGAACAAGCGTAGAGTGTTGGGAAAAGCTCTTTCCCTTATTCGCTTCCCGCTTATGACTATTGAAGAGTTCGCAGCAGGTCCGGCTCAGTCTGGTATACTCACGGACCGGGAGGTGGTCAGTCTGTTCCTGCATTTTACCGTCAATCCAAAACCACACGTCGAGTTTATCGACCGGCCCCGCTGTTGCCTCCGGGGGAAAGAGTGCAGTATCACACGTTTCAGTCAAGTGGAGAGCCGCTGGGGCTACAGCGGAACCAGTGACCGCATCCGGTTTTCGGTGAACCGCAGAATATTCGTGGTGGGATTTGGGCTCTATGGGTCCATACACGGTCCAACTGACTATCAGGTCAACATCCAgattataCATACAGATAGCAATACAGTTCTCGGTCAGAACGATACAGGCTTCAGCTGCGATGGAACGGCCAGTACCTTCCGAGTCATGTTCAAGGAGCCTGTGGAAATTCTTCCCAGCGTCAACTACATTGCCTGCGCCACCCTCAAGGGGCCAGACTCTCATTATGGGACCAAAGGGATGCGTAAAGTCACCCACGAAGCCCCTGCTACTGGTACAAAGACCTGCTTTACGTTCTGCTACGCTGCAGGCAACAACAATGGCACTTCTGTAGAGGATGGACAAATCCCAGAGGTCATCTTCTACACATAATGACCAAGCAGAATCATCTCACCATTAAGGATTCTTGCATTGCATTTTGTGGCCAATTCAACGGTCTCCATGTAGACCGGCGACCAAATACTGATCTCATTTCTAATGAgttttgtttctaatattttgaagCATGAGAATTCAGTCCTTTCAAAGTGTACTTAGGGTACAGATTCTGTTTCTACCCAAGTAGCACCTTGTAGTACCACCTTGATGTTATGAGCAGCCAATGTCATTGCTAATTAATGAACAAATAGGTGAACTTGTCATTGCAATGATCTACTACAGGTACGGTTTAATTCTAGAGAGTAACTCTCTTTCATTTgtaaatttatttgaatgttgacAACTGGTGTTTCTTTTGGTTCCACCTTTTGACCCTTGATTGTTCAACGCTAATCAGTCCTTCAAATCGCACTGATGCACTTGAACCCCCAGGTGCAACAGCAAATTTGGGGAAAGTACACTACATTTCAATTAAGACAtcaatttattgtaaaatggaCTGTTACGTACCCGTTTTGAGTGGCCTGCACCCCTTGCTAGAGGTGAAACTCCAGTTCTTTGACGGCAATGTGAACAGTAGATGTTTAAGGTGTTTTACCATAGTTGCCCTTCTTGTAGTGATAAACCACAAGAGCACTTGCATTCACAATGCCACgatgtaacaaaaacaaactctaaAGTATTGACTGCAGTGAAATACTGAACATTTGTTACAGATTCTGAATATTCATTTAAGATGTTGATACGAGATGAACAGGAAACAGCTTCATGAATGTACCAATGCTTACTTTGTAAGCACTGTAAATAATGTCCTTGTCTTGTTTCTGTTCAATTAAAGTCTGCACCCAAA

Function

GO: NA

KEGG:

id description
K10477 BTBD1_2; BTB/POZ domain-containing protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224329 lncRNA downstream 820 10709202 ~ 10709750 (-) True G151612
TU224270 lncRNA downstream 254939 10455371 ~ 10455631 (-) True G151572
TU224252 lncRNA downstream 267832 10442487 ~ 10442738 (-) True G151569
TU224187 lncRNA downstream 334610 10375641 ~ 10375960 (-) True G151508
TU224186 lncRNA downstream 334955 10375173 ~ 10375615 (-) True G151507
TU224336 lncRNA upstream 265 10715425 ~ 10715957 (-) True G151616
TU224427 lncRNA upstream 68478 10783638 ~ 10784242 (-) True G151668
TU224463 lncRNA upstream 215722 10930882 ~ 10932509 (-) True G151702
TU224465 lncRNA upstream 217834 10932994 ~ 10933421 (-) True G151704
TU224541 lncRNA upstream 219892 10935052 ~ 10994950 (-) True oaz1a
XM_043223289.1 mRNA downstream 7996 10696357 ~ 10702574 (-) True creb3l3a
XM_043223300.1 mRNA downstream 17792 10689006 ~ 10692778 (-) True rxfp3.2b
XM_043223337.1 mRNA downstream 59618 10626792 ~ 10650952 (-) False zgc:165603
XM_043223338.1 mRNA downstream 59621 10626786 ~ 10650949 (-) True zgc:165603
XM_043223507.1 mRNA downstream 288216 10420510 ~ 10422354 (-) False micos13
XM_043223243.1 mRNA upstream 45212 10760372 ~ 10776235 (-) True si:dkey-110c1.10
XM_043223322.1 mRNA upstream 61314 10776474 ~ 10783278 (-) False mbd3b
XM_043223321.1 mRNA upstream 61314 10776474 ~ 10783276 (-) False mbd3b
XM_043223324.1 mRNA upstream 61314 10776474 ~ 10783271 (-) False mbd3b
XM_043223320.1 mRNA upstream 61314 10776474 ~ 10782754 (-) True mbd3b
TU224207 other downstream 288235 10419127 ~ 10422335 (-) True micos13
XR_006247701.1 other downstream 388907 10286578 ~ 10321663 (-) False polrmt
TU224081 other downstream 746944 9957811 ~ 9963626 (-) True G151425
TU223881 other downstream 1207564 9498680 ~ 9503006 (-) False gpx4a
XR_006247709.1 other upstream 458983 11174143 ~ 11188678 (-) False rex1bd
XR_006247708.1 other upstream 464544 11179704 ~ 11188678 (-) False rex1bd
unassigned_transcript_2544 other upstream 633220 11348380 ~ 11348451 (-) True trnaq-uug_21
TU225293 other upstream 1330309 12045469 ~ 12049531 (-) True si:ch211-117l17.6
TU225397 other upstream 1427682 12142842 ~ 12145575 (-) True G152276

Expression Profile