RNA id: XM_043223287.1


Basic Information

Item Value
RNA id XM_043223287.1
length 2521
RNA type mRNA
GC content 0.44
exon number 8
gene id crlf1b
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11176508 ~ 11185087 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATTATAGTGTGTCCTAACTATTCAGGCATTACACAATTAGAGTAACATTGGGTGTGGAGCTGCACTGCACGAAACATGCCATTATAAATATGTAGACACAAAATAATCGTGTGTATTTGCTGTAGAACAAACTTCATATGCAGCCTACATCTGTTTCGTGAGGAACAGCAGACAAATACAAAAAGGAAGGATTTTGGGAAGggtttgtttcattattttctcttgTGGCCAACTTAgtatacaaaaagaaaagaaaacactggCTGCAGATGCGCTACTAATAATGACTTGTGGCTGTGTGGTAAGACATGGGAGGAGCTTGAGAAGAATCAACTTTTTCAGCTTTTGAGGCGTGCGCTATATTGATTCTCCTCCAAAAAATAAGTGAGTGAAGGTAAATCCGAGCGTCCTCTCCGCACAATGGTGCTTTCCGAAACCAGCAATGATTTTTACGAAGCTTTCTGGTGATCGaggcttttcattttcaacaatTTATGTGGAGGAGAATGGATTATGCGTGCGCGCGCTCCCACCAGTATGACAAGAATCGAGTTGAGCGCGCGCGCGGCAGACAAATGACAATTTTAgtcattatgttgttttttgtggCGCTTCTTCCATATGCGCTTACAGCACACTTGGCCGTCATATCCCCCCAGGATCCAGTGCTTCACATAGGCTCGAGCATGACTGCGGTGTGCACCATTAGCGCCGAGCTGGAAATAACAGCTAGATCCTTGTACTGGACGCTGAATGGAAAACGCTTGGCTAGAAACACTTATAAGGTCCTCAGCTCGACCGAATCCAGCGTCACACTCCATCAACTCAATGGCTCCTTGCAGCGGTCAGGAGACAACCTGGTTTGCCATCGAAGCAACGGAGAAGTGTTGGCTGGATCATGTCTTTATGTTGGCTCGCCCCCTGAGAAACCCATCAACCTGACATGTTGGTCACGAAACACCAAGGATCTCAGCTGCAGATGGAGTCCGGGAAGTCAAGGAGAGACATtcataaatactaaatatatccTCAAGTACAAACTAAAATGGTACGGTAAAGAGAAAGACTGCGAGGACTACACAGGACAGCTGTATACGTGCTACGTTCCTCGCGACCTTGCCATTTTTACACCATATGAAGTTTGGGTGGAGGGGTCCAATCAGCTTGGCTCTGCCACTTCTGATGTGATCACCTTAGACATTTTAGATGTAGTAACTACAGATCCGCCTCCTGATGTCCTTGTGAGCCGAGTTGGAGATCTGGAAGATCAATTAAGTGTACGTTGGGGGAGTCCTCCTGCTCTGAAAGACTACCTGTTTCAGGCGAAGTATCAGATACGATACCGTGTGGAGGAGAGTGACGAATGGAAGGTTATCGATGATGCTGGGAACCAGACATCTTGTCGGTTAGCGGGTCTCAGAGCCGGCACAGTGTATTTCGTCCAGGTACGCTGCAACCCAATCGGCATCTACGGCTCAAAGAAAGCAGGAATTTGGAGCGACTGGAGCCACTCAACCGCTGCATCGACACCTGGCATTGACAGGTCACATATCGGCTCGTGCGAATCGAAGCCCAGCGAGCACAACTCGACGCTACGGAAGGAGCTTAAGCAGTTTTTCGGCTGGATGCGCAAACACTCTTACGGCTGTACGGACGTCAGCATCAAACTCTACGACCAATGGCGCGTCTGGCTGCAGAAAGCCCAGAAAACGCACGACCAGGTACTACAAAGCGGTAAATCATAGTGAAACTCTAAAGAAGGCTTGGGAGAGTTTGCGGGGGCCTGCGATGACAAGGTTTTTATCACTCTCCAGTGCTTGGGACTTTCATTTGGGACGAGCCGAGACTGTCTAAAGGGATCTGCAAGGAGCCTGTCGTTTGGTGACATGATCTACTGTTTGCCTCCTGCTGCAGTCCCCATCAAACACGTCAAAGGAAGCACGCTTTTGTCTCAGACAATGTTATTTATAAGGgcattaaaacataaagaaaGACTCCAAATTACGAGAgagcataaaatgtttttaagaaagaaGATAATAGGGCATTCTCTCTTTCTGATTGAcctttcatccaaaaaaaagaacCTTTGCAACTCAACgattggagaaaaaaataataataaaaaatttacaaaCTAATTTGCTGAAAGGGAGAATTCGTAAGCGACAACAAAATAtgagcatttaaatattaatctttaaaagtgagttactttaaaaaaattaaacaaggACTGATGCTGCGGATGGTCCAGAATAAACAAAAGCACCgtaaaagtatcataaaataGTCCATTTATCACTATGTCCCAAATCTTCTGAaatcatacaatttttttaaagacatattgaaatttaaagggatagttcacccaaaaactcaCCTTCACATAtcgttccaaatctgtaagaactttgttcatctttggaacgcaaaataagatatttttgattaaatatgagAGTTTTCTGACCCTTATTAGACGGCAAGGATCCTTACACAACCAAAGCTCAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224475 lncRNA upstream 12182 11128526 ~ 11164328 (+) True G151707
XR_006247711.1 lncRNA upstream 36132 11128906 ~ 11140378 (+) True LOC122327758
TU224524 lncRNA upstream 99441 11075896 ~ 11077069 (+) True G151738
TU224470 lncRNA upstream 181566 10935035 ~ 10994944 (+) False peak3
TU224469 lncRNA upstream 183482 10935035 ~ 10993028 (+) False peak3
TU224634 lncRNA downstream 111821 11296908 ~ 11297153 (+) True G151815
TU224632 lncRNA downstream 149082 11334169 ~ 11384582 (+) True G151813
TU224630 lncRNA downstream 181006 11366093 ~ 11384582 (+) False G151813
TU224646 lncRNA downstream 202545 11387632 ~ 11388850 (+) True G151820
TU224659 lncRNA downstream 241873 11426960 ~ 11427334 (+) True G151832
XM_043223277.1 mRNA upstream 184406 10987836 ~ 10992104 (+) True peak3
XM_043223326.1 mRNA upstream 245559 10923748 ~ 10930951 (+) True nfil3-4
XM_043223333.1 mRNA upstream 254479 10918089 ~ 10922031 (+) False si:dkey-172o19.2
XM_043223334.1 mRNA upstream 254479 10918573 ~ 10922031 (+) True si:dkey-172o19.2
XM_043223288.1 mRNA upstream 286318 10874428 ~ 10890192 (+) True onecut3a
XM_043223230.1 mRNA downstream 4765 11189852 ~ 11225519 (+) True cpamd8
XM_043223327.1 mRNA downstream 41073 11226160 ~ 11229779 (+) True odf3l2b
XM_043223260.1 mRNA downstream 47648 11232735 ~ 11249556 (+) True shc2
XM_043223262.1 mRNA downstream 47648 11232735 ~ 11249556 (+) False shc2
XM_043223264.1 mRNA downstream 47655 11232742 ~ 11249556 (+) False shc2
TU224458 other upstream 254582 10919060 ~ 10921928 (+) False si:dkey-172o19.2
TU224353 other upstream 339145 10806052 ~ 10837365 (+) True G151620
TU224351 other upstream 339145 10816135 ~ 10837365 (+) False G151620
XR_006247780.1 other upstream 467400 10709044 ~ 10709110 (+) True LOC122328232
XR_006247720.1 other upstream 1183069 9970622 ~ 9993441 (+) False gatad2ab
XR_006247707.1 other downstream 133602 11318689 ~ 11323940 (+) False mier2
TU224828 other downstream 637847 11822934 ~ 11824055 (+) False LOC122327289
TU224831 other downstream 642257 11827344 ~ 11833374 (+) False LOC122327134
TU224905 other downstream 825382 12010469 ~ 12268139 (+) True LOC122327127
TU224911 other downstream 863331 12048418 ~ 12263031 (+) False LOC122327127

Expression Profile