RNA id: XM_043223291.1


Basic Information

Item Value
RNA id XM_043223291.1
length 3417
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC122327726
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11567017 ~ 11571678 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTTCAGCCTTTACTGTCTGATTGGAGGCTGTTGCTATCGCTAAAGCTAATAAGACAAACAGCGGCGGGCAATAACAATTAATCAATGGCGGAAATTGAACGATCAACTTACGTGAACACTTCAGATTCAGAAAATAATTGGTAGAATGCATTTCGAAATAACTTTAATTCAAAGAATAACGTGGACTTATTTTTacgtgtatttttttatcaattagcACCGGCTATTTTGTGAAGATCGgcgttttattaattatataggCAATTATCGATGACTGCAACTCGCAAAGTGCATCTTTAACTACGTTATCGCAACCAAACGCCGAACCTTGTCCGTTCGTCGCGAGTCGGATAATTCTTCAAAGGCTCACGTTTACgcgtttttgattcactaaaaagaaccgagTCATAAGAGTCATTCGTTCGAACATGTCGCCTTGTGTGTCTTTGCCTCACCGTAAAGAATTAGGTTTGAAAAGTGGTACGTTAACTTTGAAAACGTGTGCACTTAAAAGGGAGCGCGCGAAAAATCATTCTGGAAGTTCTGAAAAACActggttgtttatttttagatactAAAAAGACATCCCCTTAACGATATTTGAAACCGCAGTCTTGATTTAAACGGGCGCTCCtcaagtgtgtgttttaaaccCGCCATTCGGTCTTGATTGTTTAAAGTGCTCGGTTTCCAGGAATCGATACGAGTCTAATCGGAAGAGCGTCGTTTCCTCTGATTGGCTCGTCCAGGCGCGCGCGTCTGCAGTGGGACTATATAAGCGCAACAGGCGACCTGCGGATCCGAACCTCTCTCACCGCAGCCTGGGAAaagacagcacacacacacacatacacacacacactaatgaacGCCGAAGTGCCTCTGAAACTGAACACTGTGTGAGGATTCGCAAAGAAGAGGAAAACCGTTTGCAAATCCAGCATCACCCAGCGGCTTCAGCCCAGAGGGATCATGTGGGTTCTGGAGAAGATCCGGGACTCAGTCGAAACAAATGTGCTCCGCCAAGGAGAGGCGGGTGACAAGGGGAAGGCGCCTGTCTATAGCAACGTCCTCACACCCGACAAGATTCCAGATTTCTTCATCCCCCCTAAGCTGGTAAGCTGCCCACCAGAGACCGACGCTTCTGACGTCAAGTCCAAAGAAAGTCTGAAACCCTCGACCTCGGAGCAAACCATCAGCAACAAGAAGATCAGCAGCCCTCGTAGCCCGCGACTGGTCAGCAAGTTGGCAGGAGACACCAAGAACCTGCTCAGGGCGGCTAACCGCCACATCATTCAGATCGAGAGCGCCGACGAAGTCGTGGCGGGTGACACCAACGCCGACCCTCAATCCCAGACCGCCATGTCGCTTCCTTACATCCCAAAGACTCAGACTTCTTACGGATTTGCCACGTTGATGGAGAGTCCCCACACCCGGCGGAAAGAGTCCCTGTTCCACTGCGACCACACCAGTCCGGTCACGTCACCCAATACCCAACGCAAGTCCCAAGGCAAGAGCAGCAACGAAGGGAATCACCTCAACCCTCCGGACTTCAGCAGCTCTCACATAAACCCCTACCGGTACTTCAGCGGTGGCGAGAGCGACACCTGCTCCTCGGCAGAGTCGTCCCCGTTCAGTTCGCCGCTGCTCTCTCGCTCCGCCTCTTTACTGAAGATCTTTACCCACGAGACACAGGCCAAGGTCGCCAAAGGTAAGCGGACATTTGCCAGGCACAGTTCCTTATCCACAGACGAGTGCAGCTCAGCGGAGCCCAGTCCTAACGTTTCTAGACGGAGCCATTGTTCCTCTTTGCAAGGTGGCGGAGCTCTGGACCACCTTCACGGAGCGGACCGCCAACAAAAAGAGCACACCATCAACATGCACAAAGGAGGCACCGTCCGGCTTTGCGCAGACTACGACGGAGGTACGGCCCGCCTGCGAATCCGCATTATGGCGGCCGAGGACCTGTATGATCCCGTGTTTGACATTAAGAGCATCAACTGTTGCGTGTCGCTCTACCTCAATCCGGGCAAGCTGCAGAAGCAGAGGAGCACGATAATCAAGAACAGCCGCAATCCCGTCTTCAACGAGGACTTCTTTTTTGATTCGGTGACTTCGGCTCAGGTTAAGAACCTAGCTTTGAAGATCAAGGTTGTGAATAAAGGCACTAGCCTGAAACGAGACATGCTGTTAGGTGAACGGGAGGTCGCTTTGTGCAAGCTCTTGTCTGGATTTTAGGCCCATCAGAATGGGACGCTGTCTTCAGAGGTGGAATAAGTGCTAGATATTTGCTTTCGTTGTCTTTCATGTAGCGGTGGTTAATTTAGCATTTACAGATTCAGTAGCAACAACCACCACCTGCTCCGGATCGAGGTGTCAGCATAGCTTTAAATTAGTTGCCCGTAAATATAGAGTCTATGACAAAGTCTTTTTGTATGTTGCCGTATTTTGGTTGTTCTACGCGTTTAGCCTAATTAAGACCAAGCGTTTACCTTTTTGATTGTAAAGACTTCTTTCCAGAGCCGCAGTCCTTTGAAGCTTCACAATGGCCCTCTGTGCTAATGTTAGCTTTGATCCGGGACGCGTCTGCTGGCTAATTTGGAGGACAAATAAGCAGACTGAACAATGTTGCGTCACACTGCATGTGTCGGAGTCAGACTTTGGCGTAAACTTGTAAATGCGATGACGTATTCTTGCAAATGTGCAGAATGTCATTTGGTGAAACCCAGAAGCCTTACTAAAGATCGTTTATCGTtttggttggtttttttttgtcttttatttaaatttttttgcatgtttagaTTTGCTCAGATTAGATCATTTTTAGACTGAGCATTGTTATCTGTATCTGTTTGCTGGATATCATTGTATGAAATGAGGGTTCTGGCTTGGACTCTTCGTCAAAAGCCTTTTAAGAAACAGGGTCTTTGAAAGTCTTTCCATGCACACTACTTACACAGAGCAAAGTAACGAGTAAATATCTACTCATGAGATCTAAATTTCAATCCTGTAACCAAAAATGTAATGGTAAAATTCAAATGCTAAAATGTAGTAGAATTATGTGGAAAGGATCTGGATATGATTATCTGTCATTATGCAAATGGTGGGTCTGATGTGCAATTTGCGTTTTCAACAGACAGAAACCATATGAATTGAAAAGTGGTTGAAATTGAACATGAATGGCCGGATGCATGGATCTTTCTTTTCTGGCCtgatgtatttgttatttttttctgattacgCAATCCAAAATAGCTATTCAATTATTGGAAAGACTGTCTAGCCTCCTTttgatttatataaaagtatatcaATTTAGTAAGCGTTTATTTCCCTTCTGGCTGCGCTTTATAGATAAAGAGCATTTTTGAGGTAATGAGGCAGCTAGTActcattaaaatgctaaaaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224780 lncRNA downstream 16147 11550198 ~ 11550870 (-) True G151904
TU224771 lncRNA downstream 36407 11528098 ~ 11530610 (-) True G151896
TU224767 lncRNA downstream 43595 11522030 ~ 11523422 (-) True G151893
TU224762 lncRNA downstream 48876 11509400 ~ 11518141 (-) True G151889
XR_006247713.1 lncRNA downstream 74057 11490673 ~ 11492960 (-) True LOC122327760
TU224804 lncRNA upstream 15983 11587661 ~ 11589923 (-) True G151919
TU224850 lncRNA upstream 221918 11793596 ~ 11794224 (-) False LOC122327290
TU224862 lncRNA upstream 269910 11841588 ~ 11845142 (-) False LOC122327182
TU224864 lncRNA upstream 269910 11841588 ~ 11845142 (-) True LOC122327182
TU225279 lncRNA upstream 421035 11992713 ~ 11993033 (-) True G152223
XM_043223309.1 mRNA downstream 76363 11465852 ~ 11490654 (-) False gna11a
XM_043223311.1 mRNA downstream 76363 11465852 ~ 11490654 (-) True gna11a
XM_043223308.1 mRNA downstream 76365 11465852 ~ 11490652 (-) False gna11a
XM_043223310.1 mRNA downstream 76366 11465852 ~ 11490651 (-) False gna11a
XM_043223336.1 mRNA downstream 101942 11440216 ~ 11465075 (-) True tle5
XM_043222520.1 mRNA upstream 221895 11793573 ~ 11804698 (-) True LOC122327290
XM_043222517.1 mRNA upstream 233137 11804815 ~ 11815578 (-) True LOC122327288
XM_043222518.1 mRNA upstream 233137 11804815 ~ 11815577 (-) False LOC122327288
XM_043222365.1 mRNA upstream 269910 11841588 ~ 11844852 (-) False LOC122327182
XM_043223483.1 mRNA upstream 274188 11845866 ~ 11855677 (-) True LOC122327836
unassigned_transcript_2544 other downstream 218566 11348380 ~ 11348451 (-) True trnaq-uug_21
XR_006247709.1 other downstream 378339 11174143 ~ 11188678 (-) False rex1bd
XR_006247708.1 other downstream 378339 11179704 ~ 11188678 (-) False rex1bd
TU224207 other downstream 1144682 10419127 ~ 10422335 (-) True micos13
XR_006247701.1 other downstream 1245354 10286578 ~ 10321663 (-) False polrmt
TU225293 other upstream 473791 12045469 ~ 12049531 (-) True si:ch211-117l17.6
TU225397 other upstream 571164 12142842 ~ 12145575 (-) True G152276
TU225529 other upstream 989195 12560873 ~ 12567345 (-) False LOC122328185
TU225672 other upstream 1334471 12906149 ~ 12914226 (-) False cxcl12b
TU225673 other upstream 1334569 12906247 ~ 12914226 (-) False cxcl12b

Expression Profile