RNA id: XM_043223292.1


Basic Information

Item Value
RNA id XM_043223292.1
length 2486
RNA type mRNA
GC content 0.51
exon number 8
gene id shdb
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11268948 ~ 11295523 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCGAAGACCTCCCCTTTAAACGCCACAgctctctcgctcgctcgctgCCAGACGCGTTCGGGCGAGCGTTGCTGTTCTCCTCATATATTCTTCTCGCCCGTTCCCCAGCCGCGCGCGCGCGTTCTTCCTCGCGCGCGCAACACTGTAGCGTTCGCGAGAACCGCGTCCGGACTTCCACGATCATTTAGCGCCGAGATCAAAAGCAGGTGTCTTTGCTGTCCATGGACCACCTGTAAATCCAGGTCGGCTTCTCCGGGGATCGACCTCGTTTGAGGACCGCAGTTGTGCCTGAAGCATGAGTTCAGTGCATTATTTCCATGGCAGTCTGCTTAGTTTGTGGATAAACTTATAATCTCATCCGCAGTCTAGATCCCTGGCCTCGTTGTAGGTCAGCGTAGGACCCTTTGAGGACCGTTGGAGTCTTTGTGTCCTTCACCAACAGGAAAGAATGGCAAAGTGGTTGAAGGACTATTTAAGTTTCGGGAGCAAGCGAGTCCCCCCCCAACCGCCCAAACCTGACTACAGCGAGAGTGAGATATTGAAGGCATACCGCGCTCAGAAGAACCTTGACTTTGAAGACCCTTATGAAGACTTCGAGAACAGAGCCAGAATCGACAACGGGTCGACCGAAACGTCCCACTTGGGCTTTGGCTCTCCTCTGAAATCCTCTAGTCTGGATATCAAGGTTGTGTCGCCCAAGCATCGCCTTATAAAGGTGGACTCGCAAGACCTGGGACGAAGCAAGATTCTCTTAAGCTCTGTGTCTTTAGAGGAACCAACAGATCCGGTGGTTCCTTCAGCTCCAGTCATGGGAGACACCGACTACTCCGACCCATTCGATGCCCGTTTGGACCCGCGTCCCGAAACCGCTCAAGGCCCGATCACCCCTGAGAACAACGGCTACATGGAGCCCTATGAGGCCCAGAAAGTGATAACCGAGCTGCAGAGGAGAGCTGGAGGTGGAGCGGGAGGCTGGGGGAGAGGGGAGGTCCAGCTCTATGACACCCCATATGAGGAGCGCGTCCCGGGGCAGCCGGATCTGCCTGAGGAGGGGAGGGAGAGCAGGCTCCCGCAGGACGACGACAGGCCCGCTGACGAATACGACCAACCGTGGGAATGGAAGAAGGAACACATTTCCAAAGCTTTTGCAGATATGAAAGATCTGACCGAGCTGCCGTGGCCTCCTCCGGTCGGACAGCTGGAGGAGGAGCCCATCTGCGGTGAGCAAGTGCAGTTCGAGGGTGCTGAGTGGGATCGTTCCTGTTCTCCCACAGAGCGCCTGAGGTGTCCCAGGCCTCCGCCAACCACAGGGAGCATGAAGCTACGCAAGCCAAGCGAACCTCATTCCATGATCGGCGAGAGAGTGGATCCCACCCTGCCCCTGGAGAAACAAGTATGGTATCACGGCTCTCTCTCGCGCTCTGAGGCCGAGTCTCTACTGACCCTCTGTAAGGAGTGCAGTTATTTGGTACGAAACAGCGAGACCAGTCGCTTGgactactctctctctctgaggagcTGCCAGGGATTCATGCACATGAAGTTCAGCCAGTCAAAAGACGGCCGCTATATCCTGGGCCAGAACAGCCCTCCGTTCGACACCATCCCAGAAGTGATCCACTACTACACCACACACAAACTCCCCATCAAAGGAGCCGAACACTTGTCCTTGCTCTTCCCTGTGCTGGTTCAGactctctgattggtcagagcACTGTCATGGGTGGAAAAAAACAGCCAAGGGATTTGCCGTTGGATATGAAGAGTTCTTCGACAAAATCAGCATCAACGTATACAAACGTGCATTTAATAGTACAACAGCATCTGATTGAGGACATCAACTTCTAAAATGGACACATCAGGTCAAATTACAGTTAGATCTGTTCACACGCTATTTCACGTTCTTGTTAATAACACTTTTCCATCTCATCGAATGAAACGTACCAGACTGGTGGCAGCGAGACCTGTTGCTTGTCTTCAGTCGGTGTTATTCTCCGCTTGGACGGTGGATTAGCCACCGCTAATGTTTATTGATCGATTAGCATCCTCTTAGGACGAGCAGACGGGCCTCTGTATTTTTATAGCTGCTGTAAAACACACTTCAATGTGACCGTTTATGACTATCTGCTCTTTAAAGTTTGTAAAGCTTTTGGTTGTAGTAAAGACCCCTGAGACCACACACAAATGTTTGGCTTGCTCTAGACAATAGTCCTCAAAAAGACTTTATAGTTCTTACATTGTCTTTGTCACGGTTGCTGGCCGTAGATCAGTGCATGTTGGCAGCTTACGTTGAGGACAGTAGCTGATTctaactgataaaaaaaaaaaaaaactcgatGTGATGTTTGAATCATGATTATTTGCAGAGATGTTCCTGTAATTGGAATATTAGGTCACCAATAccataaaatgctgaaaatgtgtttctgtagCTGCTGTTTTAAACTGGTTTACATGTGTTCTATAATAAAATTTCTAAAAAGAG

Function

GO: NA

KEGG:

id description
K23697 SHB_D_E_F; SH2 domain-containing adapter protein B/D/E/F

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224539 lncRNA upstream 85868 11182841 ~ 11183080 (+) True G151750
TU224475 lncRNA upstream 104620 11128526 ~ 11164328 (+) True G151707
XR_006247711.1 lncRNA upstream 128570 11128906 ~ 11140378 (+) True LOC122327758
TU224524 lncRNA upstream 191879 11075896 ~ 11077069 (+) True G151738
TU224471 lncRNA upstream 275920 10973022 ~ 10993028 (+) False peak3
TU224634 lncRNA downstream 1385 11296908 ~ 11297153 (+) True G151815
TU224632 lncRNA downstream 38646 11334169 ~ 11384582 (+) True G151813
TU224630 lncRNA downstream 70570 11366093 ~ 11384582 (+) False G151813
TU224646 lncRNA downstream 92109 11387632 ~ 11388850 (+) True G151820
TU224659 lncRNA downstream 131437 11426960 ~ 11427334 (+) True G151832
XM_043223260.1 mRNA upstream 19392 11232735 ~ 11249556 (+) True shc2
XM_043223262.1 mRNA upstream 19392 11232735 ~ 11249556 (+) False shc2
XM_043223264.1 mRNA upstream 19392 11232742 ~ 11249556 (+) False shc2
XM_043223263.1 mRNA upstream 19392 11233901 ~ 11249556 (+) False shc2
XM_043223327.1 mRNA upstream 39169 11226160 ~ 11229779 (+) True odf3l2b
XM_043223296.1 mRNA downstream 22584 11318107 ~ 11328230 (+) False mier2
XM_043223297.1 mRNA downstream 22616 11318139 ~ 11328230 (+) False mier2
XM_043223298.1 mRNA downstream 23169 11318692 ~ 11328230 (+) True mier2
XM_043223325.1 mRNA downstream 35182 11330705 ~ 11345014 (+) True plpp2b
XM_043223252.1 mRNA downstream 57754 11353277 ~ 11381737 (+) True tle2a
TU224458 other upstream 347020 10919060 ~ 10921928 (+) False si:dkey-172o19.2
TU224353 other upstream 431583 10806052 ~ 10837365 (+) True G151620
TU224351 other upstream 431583 10816135 ~ 10837365 (+) False G151620
XR_006247780.1 other upstream 559838 10709044 ~ 10709110 (+) True LOC122328232
XR_006247720.1 other upstream 1275507 9970622 ~ 9993441 (+) False gatad2ab
XR_006247707.1 other downstream 23166 11318689 ~ 11323940 (+) False mier2
TU224828 other downstream 527411 11822934 ~ 11824055 (+) False LOC122327289
TU224831 other downstream 531821 11827344 ~ 11833374 (+) False LOC122327134
TU224905 other downstream 714946 12010469 ~ 12268139 (+) True LOC122327127
TU224911 other downstream 752895 12048418 ~ 12263031 (+) False LOC122327127

Expression Profile