RNA id: XM_043223297.1


Basic Information

Item Value
RNA id XM_043223297.1
length 4186
RNA type mRNA
GC content 0.47
exon number 13
gene id mier2
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11318107 ~ 11328230 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGCGGGGCTCGGGGGAAGAACAACACAACGATTAAATGATTCAGCCGCTCCGGTGCACTTTAACAACCAGCCGCGCATTAACGGGCAGCTTAGGACCCGGCCCGTCTGATCGAGCGACCCAGAAAACGGCGAAAACAGACGGTCACTAATAAGGAGGAAGTTAAAATGGGAGCACTCCTCAGCGTTCCGCCGCTCTGTCTGTCTCCGTGTGCGTTGCGTTCGCTAGCGTTTAATTCGGCGGATCGAGCGCCGTTCCGAACAACGGGAGAGCGCCGAGAGCGCCGGTGCTGAAGCGTGTCCCGGGCGCGCGCGGGTGCCAGCTCTAAAGTTTCAAAACTTCAGATATTGTCACTGCCTCGTCGACTTCCCTAAAGTCCGCTGTTTCCTTCTCGCACCGGTTCGGGTCGCGGTGCAAACGTTCAGCACTGACTTACAGGAAAGCGCCTGAGCGACTAACTTCAGGAAAGCTGTGCTTGGTCGCACGCAAATGCGTTTAGCGGCGATAAAAGAGGAGAAACCCGAGAAAAGGCACTTTGACTGTGCAAATGGGCTCCAAGGACCAACGGCTCAGTCGTGTAGACATTTTCCACCAGGGGTATGCGGGGCCGCTGGAGGCCCTTCCCCGGGCAACCACGTTCCTAGAGGAGCAGGACGGGAGCCTGGTGGCCCTGCGGAGGCAGGCGATAAAGATGGCGACCAAATCCCACGCAGGTGGTGAGATGCCCCTTGAGCAACTGCTGGCACTTTATGGGTACAACATGCACGATCCTGTCCTGCAACGACAACAGGAGCCGAATGAGCTGGCAGCCAGTCTGCCTGAAATGACACTGGACAAGGTTCAGATAGGTAAAGCTCTACTCTCAGGAGCGGAGGATGTGGACAGCCATTCCTCTGCCGATGACCTCACACTCTCCGTCACGTCCCATTCATCTGACCTCTTACAATGTCACCTAAGAGGTGATGACAAAGACACTTCAGTCAGCTGCTCCGAAGATGACTCCGAAAGCACCTCTATCCCCTCCAGTGATGGctgcaagGACATAATGGTCGGCCCCCAGTATCAAGCTATGATTCCTTCTCTCTGTACACACACTTTTAATGAAAGAGCCTATGAAAAAGAGGACCAGTTATTGTGGACCCCGGATGTGCTGTCCGGTCCGGCTGTAGAGAAGTTTTTGCTTGAAGTCCAGAGAAAAGGGAGTGACGATGGACCTACAAACACTTTGACCACAGGAGACGCAGTCAAAGACAATGAGCAGGCTTTACATGAACTAGTGAAATGCAACTTCAATGCAGACGAGGCACTAAGAAGATATCGCTTTAATGTCAAGGTTTTCAGTGAAGAGCTTTGTGGCTGGAGTGAGGAGGAGTGTCGTAACTTTGAGTATGGTTACCGTGCCCATGGGAAGAACTTCAACCTCATACAGGCCAACAAGGTCCGCACACGCTCGGTAGGTGAGTGTGTAGAGTACTACTACATGTGGAAGAAATCGGAGCGGCACGAGTATTTCACACAGCAGGCCACCAAGCTGGGTCGGAAAAAGTGCAATCTGCCATCCGGCAACACAGAGGATGCTGAGCCAGATGGAGATACTGGTGACGTGGAAGGTGCCGCTCAAGGTTTGCCAAGTAGGTCTTCCATTCAACTCCAACCCCCATCGCCACCTGCAGCCGGGGAGCTAGATAAACCAGAGGACAGCCTGAATTGCGCAGCTCAGTTTCATGGTCGTCCGCGACGGAAACGCACGCCGCGCTTCCTATTAAAGCCCTGAGCTTCCTGCTCACTGACAGCCTAAAACTGACAGACAAACagGTTCTGGGCGAAACAATGAAGAGATGGAACTGTGTGCAGGATCTTGCTCTATCCCACAGGGGCAGCAGTCGTTCAGCCAATTTTCTCTTCTCCCTCCAGCGCTCCAGACATCAGACGCGGCTTCCCCGTCCACCCAGCTTTACTTCTCCTCTCTCCCTTGTAGCCACTCCGTCCCTTCTTCTCAGACAGACTCAGGGCTCCTCGGAGCAGGTTTTTACCAGCTGCAAATGGGGTCTTTTCCCGAACATCCTGCTTGCTCGGAGATCGCTGCCTCAAGAAGGCTTCCGGTTGACTCCTCTTCACCTTCCTCTCCCGTCCCAGACTTCGGGATAATCGGTAGCCTCTTATGCACACCTTCGTCCATCAGCTCCTCGCCCGTGCGGCGGAGGAAAACATTCCAGATCTGAGCAAACGTGACGACTCTCGTTCAACCTGGAAATTGCGGTCGGGGTGTTGCTTTTCAGGCTGCGCAAGAAGAGTCTGAATTACGGGGGATAGTTGAGCCAAACGTGAACATTTTGTCAACATTAACTGAgccttatgtcattccaaagaTGTTTGAAGTTCTTCTGAggagcacaaaagaagacgTTTTGTCCGTGCAATGACATCTAACAGGGTCCAAAACTCGCAAGCTCCCAAAAAATGCATGAACGTAGCAGCTTTGTGCATTTCACAAACCTTTTCCCCATTAACTTATGCACTACTTTCTTCAACATTTAAcatgtttggaacgacatgagcgtgagtaaatgatgataggaTCTCAGTTTTTGGTAAACAGTCCTTTTAATCAAGAAGGTgttcataatatttaatttgttattattagttttttaaactattaaagtaGTAATCGGGTGTTTTAGGAAGCTGGGTGTCTCTGTAAGACTACTACGTGCAATGAAAGCGCTTTTAACTACATCATTTTAAGCTTCtttagatatttggactcattTTCAGTAACTGTTCAGTAATTTACTGCTTGTGCAGTTAATTCATACGGCTCCTTTCATTGCATGTAGCTCTTATAAACGttcaaaactttttctttctttctttttcttttttttttttaatcatttatttctttttgttaaaagagtagtttacccaaaagcgaaaatatgctaaaaatgtgCTCGGACTCAGGCCATGAAgattagtttgtttgttcatcagagcagatttggagaaatttagcatcgCGTCgtttgctcaccaatgaatgCTCtagagtgaatgggtgccgtcagaatgaaagtccaaacagctgatttaaaaaacatcatgGTAATCAAAACAACTCCAAAAAAGCCTTTAATTTTAAACCGTCTGGACAAAATACCAGTATATAAACCATAATAATCCTTCCTCCAGTAAAAACGTTCAACATATTTCagtatgggttttttttttgagtgtttttagttgatatgtgcatatttttctcCTGATTCTGATGATTTTTACACTATAGAAAGCAATATCTGCATTAAAGAATGGTTTGAGGTTATAAACATGTTAGCGATGgctttgtttcttacaaacacgcagCCTCTCGCTTCTGAAGACGTTTCTTGATGGACTAAAGCGAGTTTGAGCATTATTATGTTTCTATCAGCTGTtttggactctcgttccgacggcacccattcactgcagagcatccagcGGCGAGCAAGTCGAGTAACGCTACATTTCCAGAAGATCTGATCCAGTGAAGGACCAAATTTGAGGGTGGATGCactttcagttttgggtgagcTGTTTCTTTAAAGCATAAAACGTTTTATTTGCAAAGACGATATCATCGAGTGAGCTACTAATGCAGTCGCTTCgtccttttgtttgtttgcgaTATTCTAGCTTCCCGTCGTAGGTTCTctttgtgcaataaaaaaaacaaacaaaaacaaaaaaaaacacaagttcCTCAGGGGCTCCGATCGTTTCCCTCTCGGTCTGGTCCGTCAGTACTTCAGTACTAAGTGTTGAAGGGGGTTTTTCAATGGTTTATGACCGTACGCTCCACAGATGCTTCGCCAACAATTGCAATCCGGATGTAAGTGGCAGATTCACTGCGTTTAAGTTTCTCAGGTTTTGCAGGGAGTTTGTAAATTGCGTGAAGCCCACAGCACTACCCACAATCCTCTGCAGCGTCAAATCTCCTCACGTGTGACTGGACTCCTGTTAGTTATGAATCGAAAGCATCATGTATCACCATCATCCATATGCCTGTACGCTTTAATGCGTTTTCTAATTGTTTAGTCGGCTTTACGTTTTTGTCTGTAGTTTACACAAGGTTCAGAAGATACGAAAGGGAGACAAACACTGccttggcttttttttttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224634 lncRNA upstream 20986 11296908 ~ 11297153 (+) True G151815
TU224539 lncRNA upstream 135059 11182841 ~ 11183080 (+) True G151750
TU224475 lncRNA upstream 153811 11128526 ~ 11164328 (+) True G151707
XR_006247711.1 lncRNA upstream 177761 11128906 ~ 11140378 (+) True LOC122327758
TU224524 lncRNA upstream 241070 11075896 ~ 11077069 (+) True G151738
TU224632 lncRNA downstream 5939 11334169 ~ 11384582 (+) True G151813
TU224630 lncRNA downstream 37863 11366093 ~ 11384582 (+) False G151813
TU224646 lncRNA downstream 59402 11387632 ~ 11388850 (+) True G151820
TU224659 lncRNA downstream 98730 11426960 ~ 11427334 (+) True G151832
TU224669 lncRNA downstream 137633 11465863 ~ 11466334 (+) False G151841
XM_043223292.1 mRNA upstream 22616 11268948 ~ 11295523 (+) True shdb
XM_043223294.1 mRNA upstream 22616 11268948 ~ 11295523 (+) False shdb
XM_043223295.1 mRNA upstream 22616 11268957 ~ 11295523 (+) False shdb
XM_043223293.1 mRNA upstream 22616 11269192 ~ 11295523 (+) False shdb
XM_043223263.1 mRNA upstream 68583 11233901 ~ 11249556 (+) False shc2
XM_043223325.1 mRNA downstream 2475 11330705 ~ 11345014 (+) True plpp2b
XM_043223252.1 mRNA downstream 25047 11353277 ~ 11381737 (+) True tle2a
XM_043223254.1 mRNA downstream 25047 11353277 ~ 11381737 (+) False tle2a
XM_043223253.1 mRNA downstream 25047 11353277 ~ 11381737 (+) False tle2a
XM_043223255.1 mRNA downstream 25049 11353279 ~ 11381737 (+) False tle2a
TU224458 other upstream 396211 10919060 ~ 10921928 (+) False si:dkey-172o19.2
TU224353 other upstream 480774 10806052 ~ 10837365 (+) True G151620
TU224351 other upstream 480774 10816135 ~ 10837365 (+) False G151620
XR_006247780.1 other upstream 609029 10709044 ~ 10709110 (+) True LOC122328232
XR_006247720.1 other upstream 1324698 9970622 ~ 9993441 (+) False gatad2ab
TU224828 other downstream 494704 11822934 ~ 11824055 (+) False LOC122327289
TU224831 other downstream 499114 11827344 ~ 11833374 (+) False LOC122327134
TU224905 other downstream 682239 12010469 ~ 12268139 (+) True LOC122327127
TU224911 other downstream 720188 12048418 ~ 12263031 (+) False LOC122327127
TU224914 other downstream 910552 12238782 ~ 12265692 (+) False LOC122327127

Expression Profile