RNA id: XR_006247707.1



Basic Information


Item Value
RNA id XR_006247707.1
length 1946
RNA type transcript
GC content 0.47
exon number 11
gene id mier2
representative False

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11318107 ~ 11328230 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GCGCTTGAGAGGCTTTGCTTTGAGCAATAGGCTGTATCTAGAAGTGTTTAGGAGgtaaacatgcattattatattcagTTTATTGGTATAAAGCCATTTTTGGTGGACGTATGGCAATTTTGTTCCATCATGACATTTGAAAGCATAACAATTTTGGTGTAAAACGTCCACCGTGGTGCACTGGCTCATGTTCTGAGAGATCTGGTGCTTTCAGAAATAATCGAATAAGCACTTCTCTTGAACGAGTTACATCGCGGCATTGTTTCGAACATAATTTGTGTACACCATATGTAATATTGCTTGAATTGGTCTAAACATCGGCGAAGAGTCATTGACAAAACGTTCAACTTGATTAAGGTGGAGATTACGGTAGCTGCGGTGAAatttagtttcatatttaatttcatgaCCCGTCATAAGGTTTACTCCGTAAGCACTTTATTGTAAAAGTTAAGAAGTGAGAAATGCAACGGACAGTCATACTGGTTTATTTGGCTCAAAGGTTAATTCTAGCTCTTTCACctattaataaagtattaattttagCGAATATAGTCAACTTTCTGGTCTTCATTTGAACCGATTACTGTGCATTGGAGGAATTTCATTGAGAACGATCTTTTCTCGCCGTGCTTTAGCTGTGCAAATGGGCTCCAAGGACCAACGGCTCAGTCGTGTAGACATTTTCCACCAGGGGTATGCGGGGCCGCTGGAGGCCCTTCCCCGGGCAACCACGTTCCTAGAGGAGCAGGACGGGAGCCTGGTGGCCCTGCGGAGGCAGGCGATAAAGATGGCGACCAAATCCCACGCAGGTGGTGAGATGCCCCTTGAGCAACTGCTGGCACTTTATGGGTACAACATGCACGATCCTGTCCTGCAACGACAACAGGAGCCGAATGAGCTGGCAGCCAGTCTGCCTGAAATGACACTGGACAAGGTTCAGATAGGTAAAGCTCTACTCTCAGGAGCGGAGGATGTGGACAGCCATTCCTCTGCCGATGACCTCACACTCTCCGTCACGTCCCATTCATCTGACCTCTTACAATGTCACCTAAGAGGTGATGACAAAGACACTTCAGTCAGCTGCTCCGAAGATGACTCCGAAAGCACCTCTATCCCCTCCAGTGATGGctgcaagGACATAATGGTCGGCCCCCAGTATCAAGCTATGATTCCTTCTCTCTGTACACACACTTTTAATGAAAGAGCCTATGAAAAAGAGGACCAGTTATTGTGGACCCCGGATGTGCTGTCCGGTCCGGCTGTAGAGAAGTTTTTGCTTGAAGTCCAGAGAAAAGGGAGTGACGATGGACCTACAAACACTTTGACCACAGGAGACGCAGTCAAAGACAATGAGCAGGCTTTACATGAACTAGTGAAATGCAACTTCAATGCAGACGAGGCACTAAGAAGATATCGCTTTAATGTCAAGGTTTTCAGTGAAGAGCTTTGTGGCTGGAGTGAGGAGGAGTGTCGTAACTTTGAGTATGGTTACCGTGCCCATGGGAAGAACTTCAACCTCATACAGGCCAACAAGGTCCGCACACGCTCGGTAGGTGAGTGTGTAGAGTACTACTACATGTGGAAGAAATCGGAGCGGCACGAGTATTTCACACAGCAGGCCACCAAGCTGGGTCGGAAAAAGTGCAATCTGCCATCCGGCAACACacAAGATGTCTTCAtgatttcttacaaacatgcagcttttcacttcacaaggcATTAAGTGATGGACTGCAGTCCTGTGGATGATTGTGacgttttaatcagctgtttaaactctcgttccgacggcacccgttcgctgcagaggatccattgAGAGGATGCTGAGCCAGATGGAGATACTGGTGACGTGGAAGGTGCCGCTCAAGGTTTGCCAAGTAGGTCTTCCATTCAACTCCAACCCCCATCGCCACCTGCAGCCGGGGAGCTAGATAAACCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU224634 lncRNA upstream 21536 11296908 ~ 11297153 (+) True G151815
TU224539 lncRNA upstream 135609 11182841 ~ 11183080 (+) True G151750
TU224475 lncRNA upstream 154361 11128526 ~ 11164328 (+) True G151707
XR_006247711.1 lncRNA upstream 178311 11128906 ~ 11140378 (+) True LOC122327758
TU224524 lncRNA upstream 241620 11075896 ~ 11077069 (+) True G151738
TU224632 lncRNA downstream 10229 11334169 ~ 11384582 (+) True G151813
TU224630 lncRNA downstream 42153 11366093 ~ 11384582 (+) False G151813
TU224646 lncRNA downstream 63692 11387632 ~ 11388850 (+) True G151820
TU224659 lncRNA downstream 103020 11426960 ~ 11427334 (+) True G151832
TU224669 lncRNA downstream 141923 11465863 ~ 11466334 (+) False G151841
XM_043223292.1 mRNA upstream 23166 11268948 ~ 11295523 (+) True shdb
XM_043223294.1 mRNA upstream 23166 11268948 ~ 11295523 (+) False shdb
XM_043223295.1 mRNA upstream 23166 11268957 ~ 11295523 (+) False shdb
XM_043223293.1 mRNA upstream 23166 11269192 ~ 11295523 (+) False shdb
XM_043223260.1 mRNA upstream 69133 11232735 ~ 11249556 (+) True shc2
XM_043223325.1 mRNA downstream 6765 11330705 ~ 11345014 (+) True plpp2b
XM_043223252.1 mRNA downstream 29337 11353277 ~ 11381737 (+) True tle2a
XM_043223254.1 mRNA downstream 29337 11353277 ~ 11381737 (+) False tle2a
XM_043223253.1 mRNA downstream 29337 11353277 ~ 11381737 (+) False tle2a
XM_043223255.1 mRNA downstream 29339 11353279 ~ 11381737 (+) False tle2a
TU224458 other upstream 396761 10919060 ~ 10921928 (+) False si:dkey-172o19.2
TU224353 other upstream 481324 10806052 ~ 10837365 (+) True G151620
TU224351 other upstream 481324 10816135 ~ 10837365 (+) False G151620
XR_006247780.1 other upstream 609579 10709044 ~ 10709110 (+) True LOC122328232
XR_006247720.1 other upstream 1325248 9970622 ~ 9993441 (+) False gatad2ab
TU224828 other downstream 498994 11822934 ~ 11824055 (+) False LOC122327289
TU224831 other downstream 503404 11827344 ~ 11833374 (+) False LOC122327134
TU224905 other downstream 686529 12010469 ~ 12268139 (+) True LOC122327127
TU224911 other downstream 724478 12048418 ~ 12263031 (+) False LOC122327127
TU224914 other downstream 914842 12238782 ~ 12265692 (+) False LOC122327127

Expression Profile