RNA id: XM_043223300.1


Basic Information

Item Value
RNA id XM_043223300.1
length 3773
RNA type mRNA
GC content 0.44
exon number 1
gene id rxfp3.2b
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10689006 ~ 10692778 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAGGGACCGGCGAGACGGCGCTCTCTCAGCCGGGGAAGTACTTACACATGCCGGCAGACAAAGTGCGGTGGACACGACGAACTTGaggtaaattaaatgaatggatTCGTTTCTCCGTTCGCCTCGTTTCACCATGACAACGGATTGAGTGGGTGCCTGCCATGGAGAGGAATAACACCACACAAACTCTGGAGCTGGGTGAATGTGAGCACGCGTTGGACACCAGCGCGGCGCTGGACAACTGTACGGACGCTGCCAGCGGGAACCTGTCTTTACGCTGCTGGCTGCATTTGTTGACGAAGGAGTCTAGCTCAACGCTACAAGGTGACGGGTCTAGTTTAGCTGTGCGTGTGATGATCGCCCTCATTTATTCAGTGGTGTGCGCTCTGGGACTTGTAGGCAACTCTCTGGCGCTCTACCTGCTGCACTCGCGCTACCGGCAGAAGCAATCTTCCATCAACTGCTTTGTGATGGGTCTGGCTCTAACCGACCTGCAGTTCGTCCTAACCCTACCGTTCTGGGCCGTAGACACGGCGTTGGACTTCCGCTGGCCGTTCGGCAAAGTTATGTGCAAAATCATCAGCTCTGTCACGACTATGAACATGTACGCCAGCGTCTTTTTCCTGACCGCCATGAGCGTGGCCAGGTACTATTCCATCGCGTCCTCGCTGAAGATGCACAGCCGGCGAGCGGCGGCGGCCGCGGCCAAATGGATCAGCTTGGGCATCTGGGTCGTCTCTCTGATAGCGACTCTCCCACACGCCATTTATTCCACCATAGCCCAAGTTGCGACAGACGAGGAGCTGTGCTTGGTCCGCTTCCCCGAAACGGGAAGCTGGGACCCGCAGCTGCTGCTAGGACTGTACCAGTTGCAAAAGGTTCTGCTCGGGTTTCTGATCCCACTGGTGGTGATCACCGTTTGCTATCTCTTACTTGTAAGAATCGTGCTGAGCCGGAGGATTAGCGGCGTGGCGGGCTCCGAAAGCGAGCAGGGGCGGCACAAGCGGCGCTCGAAGGTCACCAAATCGGTTGTGATCGTCGTGCTGTCGTTCTTCTTGTGTTGGCTGCCCAATCAGGCACTGACTCTGTGGGGCGTCCTTATTAAGTTCGACCTGGTGCCCTTCAGCAAGGCCTTCTACAATGCCCAGGCATACGCTTTCCCGCTGACCGTGTGCTTGGCCCACACAAACAGTTGCCTCAACCCGGTGCTCTATTGCTTGATCCGCCGCGAATTCCGAGCCGGACTTAAAGAGCTCCTGCTGAGGGCCACGCCGTCCTACCGAAGCCTTGCGCGCCTGCTCCCACGCAAGGCCAAAGTAGCCGAGGCACCTCCTGTACTGGTTCTCGTGCAGATGGATGTTTGAAGAAGCGGATCCTTCAACGTTCGTCTTTGTTTTTGATTGACAGGACGAAGCAGGCGTGAGGAACGTCCTTTGGGAGCTGCCCCACTTTCCCTTCCGCTCGTTCAGAAACACTTTTGCGcatttgtctttctctctcaacttCCACGTACCTTTCGACGCACGGCCGCTTTCACGTGCACCTCCGGTCATCGGAGCCACCGGGGAATTCGACCCGTTCacctttgtttgcttttctgcACATTAGCAGCACAgcttaaggattttttttttttttcccgagaCATCCTTCAAGGGAGAGATAAATTATccatgtgtgtttttcaggctctgaaaaaagaagaaaaaagaatgaTATAGAACGGTCTGGTCTTCTCTCATTTTatgagatgaaaaaaatgtgtgggGGATCACTGGTTAACCCATAAATCATTGAGTGCACTGTCAATTATGAATTTACTTGCAGTCGTGTAGAATTGAATGAAGTTTCGCACTTTGATTTGTCTTGAAGGTGTATTTAATCCTAGgttgtacaaaaaaaactaaactgataaaatgtttaaGTACGTAGCTGGCAGacgaaataataattttgtgaatCGCCATCGACCAGTCAAACCGTGCAAGTGATATGATCATCTCTTATGTTTTCAATTTGACCTATAACTGTGTTATTTccaattatttaaattagtattaaaCCATgtatatcattatttatttatttctataaacaCACCACATTAGATTACCATATGTGAGCCATTAATGGATAGctcacttaaaaaaatgacattttgtgaatttactcagcctcatattgtttcaaatcaaCCTCATGCCTAGAAAACACTAAAGGAGATATTCGACAGAATGTTCAAGCTGCTCTCTCGCACTGTGAGCGGATGGGGACCAAggttaaaaagaagaaaagcaatATAAAGCATCATAACGTTTGTCAcgaaaccttaaaaaaaagctattttcgATTTCTTAAGGCATTTGAAATCCTCTGTGAGGAGCGGCCtgtaatttaagtttaaaatctgACCTGAGAGCAGTGtagtcaccattcactttcactgtATGAAAAACAGCAGCTGGGATATTCCGCTATAAACCATTTTATTCTGAACGGGATTTGAAAGACGTGAGGTGGAGTAAATAACAGAAAGTGCTTGCTGAAATCTTTCTTATGTTGGCTATATCCTCAGGGActtcatcaaaaacatacagctttGGCATAAAATATCTTTGTAGGAATATATTgtacaataaatcattttgggACTCTTAAGTACCCAttcaaacagaataaaaaattcAATCCAATATAATTAGTTATATGGTTTCATTGACAACAAAATTTGAGGCCTAATTAAAGAGCATTGGCTTAACGATCACATTATTTatgaacttttatttatatttgtcagTCATTTATTGAGCCTAAATATATTCTTGCATCATTTCACAGTCAATATACATCCGTATGCCATTGTAGGCTTTGAGGCTTTAGTGTTTTCGTACCACCTCATACGCACACTCGCACATGCCTTGCACGCACAAAGAATATCTTATAGTAAAACGATTTTAGCCTGGAATCATTAATCATTAGTCCCGCAATCTTCTGAAACTCTTCCAAGGACATTGTTCCACTGACCGAACCTTTTCAGATGAGACAGATTCGTCAATTTAAGCCAATATCGctggtttatctcctcaatgtCAGTGCCAGGTTATGATTTAGGGAAGACTGGGACAAGTTGTtacacttttttacattttttctcaaTATGCTAATCACCCTATATTGGGTGGATTGAAACAGGATTTTCAGatacatgtatattaaatatcattaatgaTATATACATGAACACTTaaacacttaataaatatattgccTATAACTATTGCCATCAGATACGAATAATAAACTCTATACATTTATAGCACTTAAAAGTGACAACTTACGCCAACCCTCCTATGACCGATGGAAACTGTGGctacattttcaattattaatctTTCTGTTGTTAccatatatgaatatataaagaaCTCCTATCTGTAAGAGAGAATAAGCCCAGCTGTGAGTGTCTCCGTCTAGGTGTTGAGGGCATGCAGATGAGCTGGTGCGAGAGACCATTAATGAGCCGAACTGATTTAAAGATCTGAATCTCAACTCAACTCTGCTGTATAATTACTTGCGGTGACATTTTGCTCCAATGTCAGGGGTCAGCGGTGTGCTTTGTTGTCAGTATATTGAAGCCCTTTGGGTGTGTTTTTTCCTCAATGTCTGTACGAAGTGTAACGATATCATgttgtttgtaaaaatatatattatactaacCGAATTTGCAAAAAGCTCTTAGACGGAAATAAATCTCGCATAAATTTTGATAAAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004945 angiotensin type II receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224270 lncRNA downstream 233375 10455371 ~ 10455631 (-) True G151572
TU224252 lncRNA downstream 246268 10442487 ~ 10442738 (-) True G151569
TU224187 lncRNA downstream 313046 10375641 ~ 10375960 (-) True G151508
TU224186 lncRNA downstream 313391 10375173 ~ 10375615 (-) True G151507
TU224127 lncRNA downstream 439164 10244918 ~ 10249842 (-) True G151457
TU224329 lncRNA upstream 16424 10709202 ~ 10709750 (-) True G151612
TU224336 lncRNA upstream 22647 10715425 ~ 10715957 (-) True G151616
TU224427 lncRNA upstream 90860 10783638 ~ 10784242 (-) True G151668
TU224463 lncRNA upstream 238104 10930882 ~ 10932509 (-) True G151702
TU224465 lncRNA upstream 240216 10932994 ~ 10933421 (-) True G151704
XM_043223337.1 mRNA downstream 38054 10626792 ~ 10650952 (-) False zgc:165603
XM_043223338.1 mRNA downstream 38057 10626786 ~ 10650949 (-) True zgc:165603
XM_043223507.1 mRNA downstream 266652 10420510 ~ 10422354 (-) False micos13
XM_043223900.1 mRNA downstream 292837 10394012 ~ 10396169 (-) True LOC122328192
XM_043223055.1 mRNA downstream 367343 10282022 ~ 10321663 (-) True polrmt
XM_043223289.1 mRNA upstream 3579 10696357 ~ 10702574 (-) True creb3l3a
XM_043223278.1 mRNA upstream 17792 10710570 ~ 10715160 (-) True btbd2a
XM_043223279.1 mRNA upstream 17792 10710570 ~ 10715159 (-) False btbd2a
XM_043223280.1 mRNA upstream 17792 10710570 ~ 10715158 (-) False btbd2a
XM_043223243.1 mRNA upstream 67594 10760372 ~ 10776235 (-) True si:dkey-110c1.10
TU224207 other downstream 266671 10419127 ~ 10422335 (-) True micos13
XR_006247701.1 other downstream 367343 10286578 ~ 10321663 (-) False polrmt
TU224081 other downstream 725380 9957811 ~ 9963626 (-) True G151425
TU223881 other downstream 1186000 9498680 ~ 9503006 (-) False gpx4a
XR_006247709.1 other upstream 481365 11174143 ~ 11188678 (-) False rex1bd
XR_006247708.1 other upstream 486926 11179704 ~ 11188678 (-) False rex1bd
unassigned_transcript_2544 other upstream 655602 11348380 ~ 11348451 (-) True trnaq-uug_21
TU225293 other upstream 1352691 12045469 ~ 12049531 (-) True si:ch211-117l17.6
TU225397 other upstream 1450064 12142842 ~ 12145575 (-) True G152276

Expression Profile