RNA id: XM_043223301.1


Basic Information

Item Value
RNA id XM_043223301.1
length 2763
RNA type mRNA
GC content 0.47
exon number 2
gene id s1pr3a
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11301565 ~ 11305187 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGTAATTTCCCTCAGTTACGTGGGATGCCAGTCTAATGACATCGGAATAACACAAACATCAGAGGATGCTCGAGCACGTGCGCGCTTCATCGTCACTGTCCGAAATATTAACGCGCGCGCCCTTACCAAACAAACTCGAATTCAGAACCGTTCAAACGCAGACGACGGAACGTTCACTCGctgcctgtaaaaaaaaacgtgttgtTGAGTTCCCGCCCAGTACGTGAGGGAATGTTGAGGAAAGGAGCGTAATTTGGAGTTTAAGATCAGAACTCGCAGGTgaattattttcagtaataataTGACGGCTCTTACAGCCAGGTCCAAAAACTTTGTTAAAATTGGATATTGTTAAAAGCCGGATGCAAACCGTTTCGATTTGGGAAAAGTGCTTCCAGGATAAACTATTTAACCCGTCTGATCCTTGAGTAGACTACGTTGGAAGCTTTTCATCACTTGAACTTTTGaaggtttatttattaacaagTAACCCAAGATATAGCTGCATCGCTTGAGATAAACTGAGGAATCATAATGTGAGAAGTGTTGGAGTCCTTTCCCAACTTTCTCACTGGAAGGTGCTCATAGACGCCATCTGCTGTTCAAAAGTGCTCGCGGGGACCTCGTGGAAAATGGATGAAGTGTTTAAATCTGGAATGAATGACATTATAGTTAGACATTACAACCACTCGGGCAAGTGGGGAAGGCCAAAGAGCACCGTTACATACAAGACAGCCTTCCTCATTTGCATCTGCGCTCTGATCGTGTTGGAAAACATCACTGTACTACTAGCACTGTGGCGCAACAAGCGCTTCCACAGCCGCATGTACTTTCTCATCGGCAACCTGGCACTTTCAGACTTGTTAGCAGGAGTGGCGTACGTGGTTAACATCTTCACCTCCGGCCGCAATACTTTTTTCCTCAGCACGGGCCAGTGGCTGCTGCGCGAGGGGAGCATGTTTGTGGCACTTAGCGCTTCGACCTTCAGCTTGCTCGCTATTGGGATCGAGCGCCACATGACCATGGTTCGTCTACGGCCGTGTGAGACCACAGGAAGGGGGAGGTTGCTAGCTCTTCTGGGAGCCTGCTGGGCCGTTTCGGTCCTGCTGAGCTCCTTGCCTAGTCTCGGCTGGAACTGTTTGGGCCGACTCCACACTTGCTCCACTGTCCTACCACTGTACGACAAAAGCTACATAGCCTTCTGCATCAGCGTCTTCACGGCCCTCCTAGCGGCAATCGTGGTGCTATACGTGCGCATCTACCTGCTAGTTACGTCCAGCGGGCGCAGAGTGAGTTCCCGGCCATCGGACCGCTCTCTCGCACTTCTGCGCACGGTAGTGATAGTACTGGGAGTTTTTGTGGCCTGTTGGGCTCCCCTTTTTCTGCTACTGCTGCTGGATGTGGGATGCAGTCCGGAGCGGTGCCCGGTTCTCTATAAGGTGGACTGGTTCATCGCTCTGGCCGTGCTCAACTCCGCTCTCAACCCGCTCATCTACACGCTTTCCAGCCGTGAGATGCGGGCCGCCTTCTTCCGTGTGTTATGCTGCTGTTGCTGTCCAACACAGCTGGACTCTATACCAACGGTAGCAGGGGCGGCACTTCCAGGAACAGTCATTCCCACCGCAGAGAACAGCAAATCAAGCATGGCTGGGGCGGCAAGTGTTGCGGCTAAGTCCTCCCTGATGCGAGGTAAAGCTTCCACCCCGTCAAACTCCCACCATCAGCATGGGGACACGTCGCCCCCGGCTGTCACGCACCCCTCGGGGCCAGGAGACCTACTGTCTGCGGTGCTGGTAAAAGCTGGGGCGCTTCCTTCTTTAGGGAAGTTTTGATAAAGATACTAGGGGAGTCTGCACAAAAGAGCAGGATTTTGTTATTTCCCAAGATGTTTGGCGACGGCTCCTTGCAATTACAGACCGTTCTTCAGCTCTTTGGGGATTACAAATTTGGATTTGCTTTTATACAAAAGGCATCCATCGATGATGAGATTTCAAAGATCAACAAACTCAATCAAAGAGAGATTGAACAAACGCTGACCAAAGGATAcacaaactgaatttatttcaacgtgtattaatatttatgaaactGAGCATGTGCTGTGAGCACATAACATAGAGCCACTACAGAATGTAATCACTCAAAAAGCCTAGGTgtgcaatctttttttttttttttttttatcaaaataatctaATTTGCATGAAGGAAAACACCTTAACAGTATTATACACATTATTGTAGCACTCTGTGTGCATGACTGACCTTTAACATTTTCCCAGTTTATTACtagacaaaaacaatatgaataGTTTGCCGATCTTACCTATTACACAAGCTAGCTGTAATACACTTTGAGTGTTTTTAAAGACTGTGGATGTTTATGGTTAATATTCTGTGGATCGGTTTACATGGCAGAATGTAAAAGGAGTAAGATTGTTGCATTGTGAATGTGCTGAAATTTTGATCGTTCTGCTGAGTAGTACTCGTTAACTGACataaaactgacataaaattCAAAGTGTGATTAGTATATGTAAGTGGGGAGAAAAACGAGCAAGCTGCCTCGTCTGTCCTGCTTTTATTGGCATGTAACCACTAGAGGGAGCTGTGACATCACACTGAAATAATCAACTTCACAGAATAATAGCGATGGCAAGCACAACCACATTTGTTCTTTGAATGCAATCAGAGCACTATTATTTAGTCGCTTGGTAGGTGCATCATAGTAACCTCGCAATAAATGGTTTTGCCTGAAAAAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0038036 sphingosine-1-phosphate receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224704 lncRNA downstream 4102 11297225 ~ 11297463 (-) True G151858
TU224584 lncRNA downstream 70462 11229986 ~ 11231103 (-) False cks2
TU224564 lncRNA downstream 115646 11184230 ~ 11185919 (-) True G151773
TU224566 lncRNA downstream 121175 11179922 ~ 11180390 (-) True G151775
TU224565 lncRNA downstream 122133 11176563 ~ 11179432 (-) True G151774
TU224733 lncRNA upstream 66942 11372129 ~ 11378059 (-) True G151870
TU224753 lncRNA upstream 160676 11465863 ~ 11466339 (-) False gna11a
TU224751 lncRNA upstream 160721 11465908 ~ 11467098 (-) False gna11a
TU224752 lncRNA upstream 161265 11466452 ~ 11467524 (-) False gna11a
TU224757 lncRNA upstream 183939 11489126 ~ 11489433 (-) False gna11a
XM_043223250.1 mRNA downstream 35410 11249988 ~ 11266155 (-) False ankrd24
XM_043223249.1 mRNA downstream 37481 11249988 ~ 11264084 (-) False ankrd24
XM_043223248.1 mRNA downstream 37481 11249988 ~ 11264084 (-) True ankrd24
XM_043223251.1 mRNA downstream 37486 11249989 ~ 11264079 (-) False ankrd24
XM_043223342.1 mRNA downstream 70316 11229974 ~ 11231249 (-) True cks2
XM_043223259.1 mRNA upstream 77006 11382193 ~ 11426081 (-) False tle2b
XM_043223258.1 mRNA upstream 77006 11382193 ~ 11426081 (-) False tle2b
XM_043223257.1 mRNA upstream 77006 11382193 ~ 11426081 (-) False tle2b
XM_043223256.1 mRNA upstream 77006 11382193 ~ 11426081 (-) True tle2b
XM_043223336.1 mRNA upstream 135029 11440216 ~ 11465075 (-) True tle5
XR_006247709.1 other downstream 112887 11174143 ~ 11188678 (-) False rex1bd
XR_006247708.1 other downstream 112887 11179704 ~ 11188678 (-) False rex1bd
TU224207 other downstream 879230 10419127 ~ 10422335 (-) True micos13
XR_006247701.1 other downstream 979902 10286578 ~ 10321663 (-) False polrmt
TU224081 other downstream 1337939 9957811 ~ 9963626 (-) True G151425
unassigned_transcript_2544 other upstream 43193 11348380 ~ 11348451 (-) True trnaq-uug_21
TU225293 other upstream 740282 12045469 ~ 12049531 (-) True si:ch211-117l17.6
TU225397 other upstream 837655 12142842 ~ 12145575 (-) True G152276
TU225529 other upstream 1255686 12560873 ~ 12567345 (-) False LOC122328185
TU225672 other upstream 1600962 12906149 ~ 12914226 (-) False cxcl12b

Expression Profile