RNA id: XM_043223304.1


Basic Information

Item Value
RNA id XM_043223304.1
length 5677
RNA type mRNA
GC content 0.42
exon number 10
gene id LOC122327734
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10467127 ~ 11650822 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

actgtttttcttcttccagaTGACTCGCCCCATCCAGGTGAAGCCAGCTGACAGCGAGAGCCGTGGAGAAGACAGGAAGCTGTTCGTCGGGATGCTAAACAAACAGCAGACGGAGGAGGACGTGTACCGTCTTTTCGAGCCCTATGGAGTCATCGAGGAGTGCACTGTGCTAAGAGGTCCGGATGGGAATAGTAAAGgCTGCGCCTTTGTAAAGTTCTCCACACATGCCGAAGCTCAGTCCGCAATCAGCGCCCTGCATGGCAGTCAAACCATGCCAACTGGCTCCGATTCTCTCCTCCCTCAGGGTGCGTCGTCCAGCCTGGTGGTCAAGTTTGCCGACACAGACAAGGAACGCACCATCCGCCGCATGCAGCAGATGGTGGGCCAGTTTGGCATCTTCAACCCTGCCATCGCCCTGCCCTTCAGCACCTACAGCACCTACGCACACGCGCTGATGCAGCAGCAGGCGGCCCTCATGGCTGCCAGTCACGGAGGCTACCTGGCGCCCAGCGTGGCCTTTCCCACCACCCAGATCCACCAGATGGGGGCGCTCAACATCAACAGCCTGCCGCCCACCCCCATGACCCCGGTGTCGGGTGAGTTTCATCAGACACTGGCAGGCCTCAGCTCACCGCCTGCCAACATCACCACATCAGCCGTCCCCAGCATTGTCACTCCTATCGTCAACGGCTTTACCAGCATCCCTCACCAGCCGAACGGACACCCTGCGGTCGAGGCCGTGTACACCAACGGACTGCCCCCTTACTCCACCCAGAGCCCCACAGCTGCAGACACCCTACAACAGGCCTTCACCGGGGTGCAGCAATATACAGCCATCTACCCAGCGACCACACTGACCCCTATTGGCCAAAGCTTGCCACAGCCGCCGCAAGTCAttcaacagcagcagcagagagaagGACCAGAGGGCTGCAACCTCTTTATCTACCATCTACCGCAGGAATTTGGCGACAATGAGCTCATGCAGATGTTTCTCCCATTTGGTACAGTCATCTCCTCCAAGGTCTTCATGGACAGAGCCACCAACCAGAGCAAATGTTTTGGTTTCGTTAGCTTCGACAACCCAGCAAGTGCACAGGCTGCTATTCAGGCCATGAACGGCTTTCAGATCGGCATGAAGAGGTTGAAAGTGCAGTTAAAACGGCCGAAGGATGCGAGCCGCCCGTACTGACAGGGCCCAACCCAAACAGGGCTCTCAGCAACAGCACAGGATTTGAAGAGTGAAATCTCAAAAGgaatttaacttttttctttcaaaacaaacaagaacaacacgaatggatttttttgaagacatatcagcatttattttacgAAGATGTTCGGCGTAGAAGAGGCGGTATTGAAGGTGAACCGGCACCCGTGGACAAACCACACTCGGCACAGCGCACGAAAGACAAGTGGAAGATCTCTCTAAAGACAGAGAACTCAACATGTCCTGTCTCTCGCTGAGCTTCGCACCGTCAGTCaagcaacaaacaaaaagaaaaaaaacgagcgAGAACACCTTCGatttctatatacatattatacacacatatgctaTTTAAAGGAAGAGGCGCTTATGGCTTTTATTACACTGGACAAATGAGGGTTAAACTTGAAGACCAAGGAAAAatgcagtggaaaaaaaaagaagctcttCTTGTCCCGCTAGTggactttctttctcttttcctcgTACCTTTTCTTCTGTCACCGTCTTTCAGCAAACGCAGGACATTCTGTGGTCACAGAGGTTTCCATGCCCTCAGTGAAACTGATAAATCTTTCACCCCAAAGGGACCAAAGgaccaaacatttttattcctcAACAGAAATATATGGtattaataacaatactaatatTACAAACTACTACTAACGacataagtttaaaaaaaaaaaaaaaaaaaaaagcataaatattcgCTTCAGGTCGGAAGAGGAAAGGgattttgatttcttttccttttacaTTTATAGCTACTGGGTTTcagaatatttaaacaaaatagaaaaaaaaagaagaaaaaaagtattttaaaagctaTACTATTTTAGTGGAGTAGAATATGTGGATTGGAGATTGTTAGGAGCATGTTCAGCCATTTTCATccatgaagacaaaaaaaaaaaaacaaaaaaaaaaaaacaaaggggGAAACTGTCCATCATCCATTCATGTCAGGAATAGGCCCATATTccaaaaaacaaatgctgagTATAACTATATATGCATGTGCGAAGTGTTGCTGGTTTAGCGAAACCTTGGGTAGATATTcagtacacacaaacaaacaaacaaacaaacgtatTTACCCGATGAAAGCTTTACTTATCGAGCAGAATAAGTACCTGTGGCTTCAACGCAAACTATCCGCGATATAAACAGCTGTACCATTGCACAGATAAATAATACGAAAAATGCAGTTAATGCTTGACAGGGATGGGgaattaattctttttttcaccACTTTTTCAACTGAAGTGGTTCTAGTTTGATTTCACCAGGCTGTGCTTCGTGAAGTAACTCTCAACTTTGCAACTTTACAATTTCATATCATCCATTTTGCGCATCTTTCGAGAACATACTCATCAAACAGTTGGTGCCAAATACTGAATAATCAACTGATAAAGCACATTAATAAGTAAACCAAGCAGTTACAAAGAGCCTTAAACCCTTACACAGCCCACAAAATTAGGTTCGTAATGGACCTACTGAAGGGACAAACTTGTTATTGCTTACAACTTCTGAAGCACATCAGAATTTTACAGGGACCATCTTGcagcatcaaaataataatcaaatttaGCCTCGGAAACCTGCACAATCAATTCCACATTGACGTTCGCAGAGTTCATTTCGCTAATAAATGAGTTTAAGATATAGAGAACGCCGCGGGACGACTCGTTGGATCTGCGAATAACCCATATTTCTAAGAATACGCTTCTCAGGCTGGTATGGATTAGCTTGACGCTAACTGTCTGCAAAGGTCTAATGAGCAGCCTGTAAAGAGCTCGCGAACAGCTTGCAAATAGCAGCCATGGGGGGTTACAGTTGGAGCAAACTGATCCATCAATAAAAAAGCCACCGAGTCTGACATTATGGTGTACTTAACCGCAGCTGTTGCTTTGCTCTCAGACAAGTCACAAATATACACAACTCTAAAGCGCTCGACGAGAATCTTAAAGACCCCGTGAAATCGAAATCGCTGAGTTTGTGTGTTAGCTCTAAGGCTAATGCTAGCTGACAAAACTAGCGCGCAAAATTTAAAATGGACCGTTTTCTGGTAAAGCAGACCTAAAAATTCAACTAAATTAAGTCTGAATTGGATGAAAAAATTACGTTTTACCAGCAATATGCGTTTAATTTTACATCTCTAATTTTTCACTTGGAAAATGGACCAAAAATACAGATTCATCATGCGCTACTAATTTTTTGTCCAATCAGATGCTACTCTAATACTACCTGCAAGTAACTACTCTGCAAGATGGTTTTGTTAGTtcttttttacttgttttccagtaaaaaaatgttataaatacatatataaaaatatatagagatcAAGACCTGTTTTTCATGAAATGTATCTTCAACGTGTATTTTGTCTCATctgagatttatttttagatatttcaaaTGGAACATTAGATGCAGTACTTTCTAAGAGTAGAGTTTTTGCAGTGTAATAAGTAGCACattatgtatgtaatgtaaacCAAATGCTATTGGCTATTTTAAGTAAGTTGACTTCCTGTTTCAAAAGGAAACGCATCAACGCTATACTCATCAAAGGATTTCACGGGGTCTTGACCTTTTAAATGGACAGTATTCTTAAAACGAGTTGTTTTCCTATGCATCGGAAGTCGCTGTTTGCCTTTTTCGTACGATTTCACGTTCCATCCACGCTGCCGTTACGCTACTCTCACCGTTTGCCAACTCGCCGATCGCGCACTGCCTTCATAGATACGCCATGACACAGCGACACAGAAGTACAGGAAGTTCAGGTCCTCCCAGAAttcacaaataaacagaaatagatGCGAAAACAGAGCTCTAGAATCTAGGTAGGACAGAAAAGCACatgttttgacctcatttgaTTTCCACTGTGGATATTTGACCTGTTTGTCTTACCTAAAAATATatctgtatgttaaatgtttaatctcGCAGCCGTCAGAAATAAGTTTCGCCGGAAAACATTAACGTCGCCCGTATATCACAGCCATTTTTTTTAGCCTCAGGTCGCGCCGAAATGGATCGCGTTCGATTCACAGGTTATAATGGCCTTTTTCTGCTGAACTCTCTCCATTTCATCTTCCCTCTCCTGTCCTGTGGTGGCATATCAGAACGTGGTGATATACAGACACGCAGCCCTCGGGCATCGGCGCTCTAATAACCTCCATGTTGCAGGGGCCTTCCTCACAGAATCTCTCCATGCCAgatgtgaattattaaaatcaaattaaatttggcCTGCATGTAAAAGCAAGtgtaatacaaattaaaaatggcaaCTAGTGCCTGAAGTTTAATAAGTTTGAAGGATGATATCATTACagcttgaaagaaaaaaaaatgagattgGAAAGGCATATAAAATGAAACTTGATGTGTTGAAAGGTGAACCGACGGCGTTAATACAAATTGCGTTTGCGCCAGAAACCGCGCGGGGTGGAGTTGTGGGACGTTTTGCACTACAGGTATTTCTGAAGAAACCAGACCACCAGCATTTCATACTTGCTTTCTTCTCATTCACACCGCATTCACGTTTCGTTCCTCGGATCTTCATGCCGAACTTTGATCTATGAGCATGCTCAAGGGGGGAAAGGGTGGGAAAGCTTCTGGGGGTTCAAATGTTATAAAGGTACTACTCATATTAACAATATGATTCTTTAACTATGGTTTGTATGCTAAGGAAAGTAGCTTATTATAGATATGAAATCTGTATATTAGGGAACAGCAGCACATTTCTCAGATTCTATGGGGAAAGTAGTTGGTGGGAGGGCGGGTTTCGGGGTGGGCCgggtttttttgctttataaagATCATGTTAAAGTTCTGGTTTTCTCAGCACAAAGCGTAAGGAAATATATATCAAGAGTATTGATTTTGCTGTGTGAAATGTGCAGCGGGAGAGCCAGGCACTCCCTGCGCTGTTCTTAAAGCCTGGATGAGACAATGCTGTTTACAgttgtttttggttttcttgttaatgtttgttgttttcttttgatattttccGAGAAAAGAGGACAAGAGGTGCACCATCTATCTCTGCGATGTGATTGGTGCGGCATGACCAACTGAAATGGGCCATTTTTtccgttttatttattttccttttctttctttttttgagacAGAGAAGATATGTCCAAGATAAATGCCTGAGAAACCAAACATCCTGTTGACATTTCTCAAATACTTGCTGCTTACATTGTTTTACGGTTATGCCTACTCATCCAATGATTTGCAGATTTAATTTATGGACgtcttatttaattatttatttatttatttatttattcctgacAACAATCTGTTTATGAAACGCCTATTTATTGGTTACGtttagaaaaatgtatgcatcGAAAAGAAACGCTTAATGggcttctctctttctctctctttttttcaattttacaataaaattttaaatttaaa

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13207 CUGBP, BRUNOL, CELF; CUG-BP- and ETR3-like factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224270 lncRNA downstream 11496 10455371 ~ 10455631 (-) True G151572
TU224252 lncRNA downstream 24389 10442487 ~ 10442738 (-) True G151569
TU224187 lncRNA downstream 91167 10375641 ~ 10375960 (-) True G151508
TU224186 lncRNA downstream 91512 10375173 ~ 10375615 (-) True G151507
TU224127 lncRNA downstream 217285 10244918 ~ 10249842 (-) True G151457
TU224850 lncRNA upstream 142774 11793596 ~ 11794224 (-) False LOC122327290
TU224862 lncRNA upstream 190766 11841588 ~ 11845142 (-) False LOC122327182
TU224864 lncRNA upstream 190766 11841588 ~ 11845142 (-) True LOC122327182
TU225279 lncRNA upstream 341891 11992713 ~ 11993033 (-) True G152223
XR_006247625.1 lncRNA upstream 342301 11993123 ~ 11997045 (-) True LOC122327268
XM_043223507.1 mRNA downstream 44773 10420510 ~ 10422354 (-) False micos13
XM_043223900.1 mRNA downstream 70958 10394012 ~ 10396169 (-) True LOC122328192
XM_043223055.1 mRNA downstream 145464 10282022 ~ 10321663 (-) True polrmt
XM_043223518.1 mRNA downstream 279540 10183038 ~ 10187587 (-) True atp5f1d
XM_043223515.1 mRNA downstream 293811 10151462 ~ 10173316 (-) True midn
XM_043222520.1 mRNA upstream 142751 11793573 ~ 11804698 (-) True LOC122327290
XM_043222517.1 mRNA upstream 153993 11804815 ~ 11815578 (-) True LOC122327288
XM_043222518.1 mRNA upstream 153993 11804815 ~ 11815577 (-) False LOC122327288
XM_043222365.1 mRNA upstream 190766 11841588 ~ 11844852 (-) False LOC122327182
XM_043223483.1 mRNA upstream 195044 11845866 ~ 11855677 (-) True LOC122327836
TU224207 other downstream 44792 10419127 ~ 10422335 (-) True micos13
XR_006247701.1 other downstream 145464 10286578 ~ 10321663 (-) False polrmt
TU224081 other downstream 503501 9957811 ~ 9963626 (-) True G151425
TU223881 other downstream 964121 9498680 ~ 9503006 (-) False gpx4a
TU225293 other upstream 394647 12045469 ~ 12049531 (-) True si:ch211-117l17.6
TU225397 other upstream 492020 12142842 ~ 12145575 (-) True G152276
TU225529 other upstream 910051 12560873 ~ 12567345 (-) False LOC122328185
TU225672 other upstream 1255327 12906149 ~ 12914226 (-) False cxcl12b
TU225673 other upstream 1255425 12906247 ~ 12914226 (-) False cxcl12b

Expression Profile