RNA id: XM_043223307.1


Basic Information

Item Value
RNA id XM_043223307.1
length 2584
RNA type mRNA
GC content 0.48
exon number 18
gene id ssbp4
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11077596 ~ 11128670 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACTAAAGGGGGTAGCTATGGAGATAGAACGTTTTCCTGGCTGCTTTCTTTGACAGGTGTTGAGTGGGGTAAAAGTCTTAAAACAGAATCCAGCATGTACGCCAAAGGTAAAGGAGCTGTCGTCCCTTCTGATAGTCAAGCGAGAGAAAAGTTAGCTTTATACGTGTATGAGTACTTGCTGCATGTTGGCGCACAGAAATCGGCACAGACCTTCCTGTCAGAGATCCGATGGGAGAAGAATATCACATTAGGAGAGCCTCCTGGATTCCTGCACTCATGGTGGTGTGTATTCTGGGATCTGTACTGTGCAGCTCCAGATCGACGGGAGACATGTGAACATTCCAGCGAGGCCAAGGCTTTCCACGACTATAGTGCAGCAGCAGCTCCCAGTCCTGTGATGGGCAACATGCCGCCCAATGACGGCATGCCAGGTGGACCCATGCCTCCCGGCTTCTTTCAAGGCCCACCCGGGTCACAACCATCACCACACTCACAGCCCCCTCCACACAACCCTAACAACCCCATGATGGGGCCACATGGCCAGCCTTTCATGTCTCCAAGGTACCCAGGCGGaccccgcccatcactccgcaTGCCAAATCAGCCTCCCGTTGGAGTCCCAGGGTCACAGCCACTCCTGCCAAACAGTTTGGACCCCACCAGACCGCAAGGACATCCAAACATGGGCGGCCCGATGAGAATGAACCCACCCAGAGGAATGGGAGGCATGGGGCCGCAGAACTACGGCGGTGGAATGAGGCCTCCTCCAAACTCTCTTGGAGGTCCTGGAATGCCTGGCATGAACATgggtCCAGGAGGTCGAGGGCCTTGGCCTAATCCTAACGCAAATTCGATAGCATACTCGTCTTCATCACCAGGAAACTATGTGGGGCCTCCAGGAGGTggcggccctccaggaactccCATCATGCCAAGCCCAGGAGACTCAACGAATTCCAgtgaaaacatttacacaatGATGAATCCAATCGGCCCTGGTGGCAACAGACCGAACTTCCCGATGGGGCCGGGGCCTGATGGTCCGATGGGTGGAATGGGATCAATGGAGCCGCACCATATGAACGGGTCTTTAGGCTCGGGTGATATGGACGGGTTGCCAAAGAACTCTCCGAACAACATGGCAGGTATGAACAATCCCCCAGGAACTCCGCGGGACGATGGGGAGATGACAGGCAACTTCTTAAACCCATTCCAAAGTGAAAGTTATTCACCCAACATGACGATGAGTGTgtgattcttctttttttttatttttatttagtttttattttatatttttaacccGTCCCCCATCCCACTTCCCGTTCTCCTCGTCTCTGCTGCGTTCggcatgttgtttttattttttccgcTCGACCTTCAACTCCCCACGACTGCCTCAAACACTCTGGGCTGACGCGGTGGCGCCCTTCAGCCGCTCGACGCGGCCGCGGAGCGAAAGACGCCCAGTACGAAGCCGAAAGAAAGCGGGCGCCGGGCCTTCTGACGGACTCAAGCTGCCTGCCGGGCTTCGTCACTGGATCGGGACGCTAAGGGCCCTCGAATGAaccaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtacatgtgcgtgtgtgtgtgggactgTGCCAGGAAGACACTTCATAACTAGCTGCTCATCAGCGTTGAGGCTGGTGGCTTCATTTCAGCcccatttacttttttttttcttctttttttttttttttcgtcggCAACGAAACGCTGAAAGCCGCGGTTGTTTCGATTTTGccgtgtacattttaaaaacggaAAAAGCTAAACTGGTGACGCTAGGGGCAGGAATGGTctcattacaatatatttgtatattattgataatattgttgttataattttcataattgCTATGATGATGATGTACTCATAATTTTATGGATTTTCCTGTAAAGGGCACATTTGTATCTCAACAACATCAATGACAGAATAAGCACACATTCAAATGCACAATGACACTTCTGTTTACATGATTTTAGGTATTTGTTTGTCTCTTCGTTTGAGTTCGTTTTGTCAGATGTCTGCATATACCTCTTCCCGTGTTCTGATGTCATCACTCCCGAGATGTACAACCTCAGTTTTTGTGTCTCCGTCAGCAAAGTGGCTACAATCACTGGTTTAATGCACCCGTCGGCACTGTATTTAAAGATTGGGAGTACATTTCGAAGTCTGAAAGGGTGACGTCGCATATTCACTGCCATCCATTCTTGCCTTGGTCACGAACGGtcaataacaatacattttaccaCCCGTTCTAGATGATTTTGCCGATAGTTGCGATATCATTCGTGTTCATTGTAATTTTGCCACTGCGTGTTTGCCACGTCGTTTCAGAAGtctttttagaaatattatacCCACGTGTTTGTAACGGTAGTTGGAGGCAGGCTGCTCTTACAAGCACGAGTTTCCTTGTGCTCTATAGTCCCATGTCTGTAAATATAtctttttgtttcgtttttttttttttttttttttttttttttttttttttggtcatggACCTTTATTGGTATTTTCAATACACTACTTGTCTGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224552 lncRNA downstream 31369 11043997 ~ 11046227 (-) True G151762
TU224541 lncRNA downstream 82646 10935052 ~ 10994950 (-) True oaz1a
TU224465 lncRNA downstream 144175 10932994 ~ 10933421 (-) True G151704
TU224463 lncRNA downstream 145087 10930882 ~ 10932509 (-) True G151702
TU224427 lncRNA downstream 293354 10783638 ~ 10784242 (-) True G151668
XR_006247712.1 lncRNA upstream 27117 11155787 ~ 11159729 (-) True LOC122327759
TU224565 lncRNA upstream 47893 11176563 ~ 11179432 (-) True G151774
TU224566 lncRNA upstream 51252 11179922 ~ 11180390 (-) True G151775
TU224564 lncRNA upstream 55560 11184230 ~ 11185919 (-) True G151773
TU224584 lncRNA upstream 101316 11229986 ~ 11231103 (-) False cks2
XM_043223299.1 mRNA downstream 1943 11062765 ~ 11075653 (-) True fkbp8
XM_043223275.1 mRNA downstream 16525 11031722 ~ 11061071 (-) False ell
XM_043223274.1 mRNA downstream 16525 11031722 ~ 11061071 (-) False ell
XM_043223273.1 mRNA downstream 16526 11031722 ~ 11061070 (-) True ell
XM_043223244.1 mRNA downstream 49483 11003059 ~ 11028113 (-) True dot1l
XM_043223317.1 mRNA upstream 33947 11162617 ~ 11175995 (-) True tmem59l
XM_043223341.1 mRNA upstream 57621 11186291 ~ 11188692 (-) True rex1bd
XM_043223340.1 mRNA upstream 57621 11186291 ~ 11188678 (-) False rex1bd
XM_043223342.1 mRNA upstream 101304 11229974 ~ 11231249 (-) True cks2
XM_043223250.1 mRNA upstream 121318 11249988 ~ 11266155 (-) False ankrd24
TU224207 other downstream 655261 10419127 ~ 10422335 (-) True micos13
XR_006247701.1 other downstream 755933 10286578 ~ 10321663 (-) False polrmt
TU224081 other downstream 1113970 9957811 ~ 9963626 (-) True G151425
TU223881 other downstream 1574590 9498680 ~ 9503006 (-) False gpx4a
XR_006247709.1 other upstream 45473 11174143 ~ 11188678 (-) False rex1bd
XR_006247708.1 other upstream 51034 11179704 ~ 11188678 (-) False rex1bd
unassigned_transcript_2544 other upstream 219710 11348380 ~ 11348451 (-) True trnaq-uug_21
TU225293 other upstream 916799 12045469 ~ 12049531 (-) True si:ch211-117l17.6
TU225397 other upstream 1014172 12142842 ~ 12145575 (-) True G152276

Expression Profile