RNA id: XM_043223335.1


Basic Information

Item Value
RNA id XM_043223335.1
length 4076
RNA type mRNA
GC content 0.43
exon number 7
gene id tle5
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11440216 ~ 11465075 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cagccatcAGCTCCCAAACTCCACTTCATCTCTTGCACAGCCACTCGATTTCCTCCAACCAGGGAGGAGAGAGACGCCAGCCCTCATCTGCGCTCATTCCCAACGTGGAAAAGGGACGGGAAAGACGCCGCGATCAACCCGACAGATTCCAGCAAACCACCCCGCGGGATCGTGATTTCTCCGTGCCGAATGCGTGTTAAAGAGCGCGCTCGGTGCGGCACACATCAGGCTGCTTTATTGCCATAGCAGCGGCGCGAGCTGCCTGTAGCTGTGCGGGAGCCTCGGCTAGCGACGGAACAAAGAAAACACACGCAAATATAACCGTCTGCCGAGCGAACCGCTTCCCCGTCGTTTGAGGAGGAGAAGGCAAGACCCCGAAGACCAAAACTGACATGATGTTTCCACAATCCAGGCACTCGGCTTCATCGCAGCAGCTGAAGTTCACGACGTCAGACTCGTGCGACCGCATCAAGGACGAGTTCCAGTTCCTTCAAGCACAATACCACAGtcTGAAGCTCGAATGTGACAAGCTGGCCAGTGAGAAGTCAGAAATGCAACGTCATTATATCATGtacTATGAGATGTCGTATGGGCTGAACATCGAAATGCACAAGCAGGCAGAGATCGTGAAGAGATTAAATGGGATCTGTGCTCAAGTCTTGCCTTACCTGTCTCAAGAGcACCAGCAGCAGGTTCTGGGGGCGATAGAGAGAGCCAAACAGGTCACCCCACCAGAGATGAACTCCATCATACGGcaGCAGCTCCAGGCTCACCAGCTCTCTCAGCTGCAGGGGCTGGCGTTGCCCATGACCCCTCTTCCTCTGGGCCTCAGTCAACCGGCCGGCCTCCCTGCCGTCACCTCCAGCTCCGGCCTCTTCTCCCTCTCCAGCATCCTGGCCTCTCAGGCCCAGCTGGCCAAGGAGGACAAGAGCACACGTGAGACCTCCGACAGCCACCGCGAGGAAGACGGAGACAAGTCCGACTAGTCGCCCGCCAAACCCCATCCTTCATCCCATCATCCTCCAGAGCTCCACCTAGAGCAGAGGCACTTGTTCCCATgttttttcacctttttatttACCTTTCGTTTCCACTCTCTTTCCATCTTTCTATCTACCCTCTAAATTGCTACTGTGTTCAAGCCTAATGTCATTCGTTCTGGTTCATTCCACCAGCTCTCTATATGTATTTATACCAATCCACCTTTTTATTGTGTTACGGAtgcttgatttgattttatttacactatttCTTGCctgcgtgtatgtatatatctatatatatattgtatatttcttATGCTCGTTGTGGAAATGGTCTACAAAATGGTGCGACCGTTAATGGACCATCGACCCTTCAgtaataattcctctttgttttgttttttttccccgctCGCTCTCTTCCTTTTAAAATCTTTCACCTTTTAAAGCTACAATCTACAATAACTGAGTCAAAAGCACTTTGGCCCCAGGCAGTAACTCTGAGACTAAAAGCAACTTTGAATCTAAAAACTAATCCATTTAGAGTTTAAAGGATCGGTGTTATTGTTCGAAGGCACGGCTGTTGCATCTATCCtaccttaaagggacagttcaagTTAAAATGAGGAttcgtttcattttttttttaatgtcgtCCCAAAGCTTTTCGACTTCAGTTCTTCTGTGGAAAACGAAAGGAGATATTTCGAAGAAGGTTCATGCTGCTCCTTCGCGTACAACAAAAGTGAACGGTTACAACGGACGTCAAACTCAAGCTCAAagtaacttacattttttaagtttccTAAACGCGTGGAAGCAGTACGTTCATAAACATAGTCAAGTGGActcatttagtttaactaaaTTGAACGCATAATCCAAAATTAGTCCATATGATtcgtatattatattatattccaaATGTCCCAAAGCCGTTTCTGTAAGAAACAGACAAATTCAATCACTGGAAATGTTGCTTGATGCACGTGGAGACCGTTCACTTTCGTTACATGGAAAAGCAGAAAGTCGGAAGGGTTtgaaatgactttaaatgtcGGAAAACGCAAAGAACGCAAAAAGAGACGTTTTGAAGAATGGTCGTGCTGCTCGTTTCCATGCAAATAGAAAGTGAATGGGATCCAAAGCAGTCAAGAacaaaaatcaccataaaaAGCCTCACAAAACTAATCCACATGCCctcagatatatagatatatatatttcaaagtgTTCTGAAGCTGTTCTTCTGAAAAATCTTTTGCTTGATGGCTATCTCTGCCATTCGCTTTCAttatatggaaaagagcagcttggacgTTTCTCGGAATGTCTCCTTTTGCGTTTCACGTAAGAAAGCAAGTCCTACGGGTTTGGAAGGACACGAGTTAGTGAGAGAATCTccattttggagtgaactatccctttaaactgcTTGATAAGTAGtattgaaagaagaaagaacatTTGTACTAGGCCCTTCAACGTACTGTATATCTATCTACCTGTTTGCCTGATTTCTAATGTGTTTGGAAGCTGTTGTGCTGTCTTAGACAGAGAATATTAGATGAATCCTCTGAGAAGCTAGCTAACCTGCTCACCAAGTGAAAGGGAACGctgtttaaaagattttttcagtcttttttatAGTAACGTCGATCTACATGGTGAGAGTCATATCGTTTTCCTTAGAAGGCAAGTTGTGAGAATAAAGTATTTGAGAAATGAGAAGCACCTTCTTTAAACCTTCTTAATCCGTTGTTTTGATAGCACTACAGGAACAGGAAGCGTGAGAAACGGTTAGTGTGATTTGGAACAAGCCCTCCCGACGCTTTTAGCACAATACGTTACCTTAAGCGGTACCTCAAGCTAAGATTTGCAGTTTTGAAAGCCTCTCAGCGTCATGTAGTATGCGTTTCTACCAAAAGGGGGCAGTAAGTCCATAGCAAGTCCACCTTCAGGGTCACTTCAGTGGCCAATGTTGGGTTTCgcaagcatatatataaaacacgcTTCTTTTGACCCGccccaaaatatataattcGCCGAACGTTTGTTCAGTCCAGAGTAagcatcttttttgttttatggctTTATTCATAATCAAACAGTGACTTGCAGCTATAGCAGTATTCTAGTAATAGATTATCGCGTTTTCATGCCAAAGTACACTTCACATTTTATCCTCTCGGTCTGAAGATACggtccttttttttgtttctctttcaggTCTGCGTTTGTGGTTTTCGTAGACGCTTTAGATTAGAATTTTGCTCTAAAGGACGCCTATAATGGAGACACGGCTAAACCGTATCGGATTCTGAAGCGAAGCTGCTTTCTAATGTGTCttaacgggacagagcgcaccgtttttttttcaattaaacgtCAAAACAAAAACCGTGCCAACGTGAGGAATGTCAACGAAAGGCCAGCTGATGATATCGTAGTGCTTTCAAAACAAATCTgctcgttttttgtttttttttggtttgattctGCCAGTGTATTTGTGAAAGAAGTGCCAGGATTTATCCTCGTGGCTTGCTACACGCGCTCAAAGCCGGTtgacgttttttcttttttttaaagcaaggaCGAAACCGTAGTGGTCAGAATCAGATCTAGCCAAACGCGAAGTGTTTTGCTATAAAGGCGGGCCGCGGTGTGTATGTTATACATAGACCTAAAGCTTTATGTGCAAATGGATGCTTCTGTGTCAGTCTTGAATGATACGTCTGTGTTTTAGAGGACTCTTAACCCACGAGGCACTCGAGAACGGGTTGTCAaccttcctttctttcttaaaCCCCCGACAGCCGTCTCCTCCCAGAATTCATTGCTTGCCTTTTACCATTTGTTAAAAGCATTGTAAGCATTCTGTGCTATAAAAGtctttttgttcgtttttttttttcagctcctGATTTTATGTATATTGTACAACCTACAGTGCAAAAATAATTGTGTTATAAAATAGCTTCATTCCATATTAAAACAGACAAAGTACATAAACATTTACTATACATAAATGGAAATTTCTGCAGTAAGGAAATGCTTCTGGTGCcttacaaataaaatcaatcaaatcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224733 lncRNA downstream 62157 11372129 ~ 11378059 (-) True G151870
TU224704 lncRNA downstream 142753 11297225 ~ 11297463 (-) True G151858
TU224584 lncRNA downstream 209113 11229986 ~ 11231103 (-) False cks2
TU224564 lncRNA downstream 254297 11184230 ~ 11185919 (-) True G151773
TU224566 lncRNA downstream 259826 11179922 ~ 11180390 (-) True G151775
TU224753 lncRNA upstream 792 11465863 ~ 11466339 (-) False gna11a
TU224751 lncRNA upstream 837 11465908 ~ 11467098 (-) False gna11a
TU224752 lncRNA upstream 1381 11466452 ~ 11467524 (-) False gna11a
TU224757 lncRNA upstream 24055 11489126 ~ 11489433 (-) False gna11a
XR_006247713.1 lncRNA upstream 25602 11490673 ~ 11492960 (-) True LOC122327760
XM_043223259.1 mRNA downstream 14135 11382193 ~ 11426081 (-) False tle2b
XM_043223258.1 mRNA downstream 14135 11382193 ~ 11426081 (-) False tle2b
XM_043223257.1 mRNA downstream 14135 11382193 ~ 11426081 (-) False tle2b
XM_043223256.1 mRNA downstream 14135 11382193 ~ 11426081 (-) True tle2b
XM_043223301.1 mRNA downstream 135029 11301565 ~ 11305187 (-) True s1pr3a
XM_043223309.1 mRNA upstream 781 11465852 ~ 11490654 (-) False gna11a
XM_043223311.1 mRNA upstream 781 11465852 ~ 11490654 (-) True gna11a
XM_043223308.1 mRNA upstream 781 11465852 ~ 11490652 (-) False gna11a
XM_043223310.1 mRNA upstream 781 11465852 ~ 11490651 (-) False gna11a
XM_043223291.1 mRNA upstream 101946 11567017 ~ 11571678 (-) True LOC122327726
unassigned_transcript_2544 other downstream 91765 11348380 ~ 11348451 (-) True trnaq-uug_21
XR_006247709.1 other downstream 251538 11174143 ~ 11188678 (-) False rex1bd
XR_006247708.1 other downstream 251538 11179704 ~ 11188678 (-) False rex1bd
TU224207 other downstream 1017881 10419127 ~ 10422335 (-) True micos13
XR_006247701.1 other downstream 1118553 10286578 ~ 10321663 (-) False polrmt
TU225293 other upstream 580398 12045469 ~ 12049531 (-) True si:ch211-117l17.6
TU225397 other upstream 677771 12142842 ~ 12145575 (-) True G152276
TU225529 other upstream 1095802 12560873 ~ 12567345 (-) False LOC122328185
TU225672 other upstream 1441078 12906149 ~ 12914226 (-) False cxcl12b
TU225673 other upstream 1441176 12906247 ~ 12914226 (-) False cxcl12b

Expression Profile