RNA id: XM_043223340.1



Basic Information


Item Value
RNA id XM_043223340.1
length 1027
RNA type mRNA
GC content 0.41
exon number 5
gene id rex1bd
representative False

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11174143 ~ 11188692 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gaagtgagtcCGACGGCGTGACTAAACGAAACGGACACATGTCGCAGGAAAGAGCTACGAAAACACAGgcaCCTACAGATTTCAAAAATTTGGTCAGAAGATTTTATGTACTTCAAGCTGAGCGTGTGGAGGCATACAAACTATTTGAGGAGGGTCATGAGGCGTACTTAAGGACGGGGCCCCACTATGACTTCGATCGCTACAAACAGCTGGTACATGAGATAACGAAAGCATTCTGCGGCATTTCCAAAGAGGTTCTGCAGATTAAAGAGCAGCTGCACCAAGACTTCGACCGGCCCGACCTCTCCGAACACATTGACAAACTGCAGATTAAAGAGAAGGAGAAATTAGAGCTGACAGCTAAGTTACAGCTGGCCAAGCAGAACGCCCAGGATCACCCAGAAGATGAGGATTTCCAAGAGAAAGTCCGTGAGGTCAAACAGGAGATTATAAAGAACACGGCTGCTTTGAGTGAGATTCTGCAAGACTTCAAGTATGACTCGGAGGAGCCGGAGTGAGATTCGGTCAATCCCGGGGAGACAGAGATGGAGTCGGATGCTCTATGAACTTTCCTTTCTGATGAAGAGCGATCTAAGGTATCGATCGCTGTCTCAGGAGTCGGAGTGCATTGCTGCTGCAGGCTCTGcagtgcatatttttattaaagagagTTTGGcatcttttatttcataattttttttatacatttagtaCAGCTTATGACGTTTTGTTTGCTAAACCAACCACCAACAGTGTTCACTGAAAGcatacatttgttcattttgaatgtaaatggCGTTCATTATTCTGTGCAGCATAATATTCAGCAAAGGCTACTgtgttacaatatatatatgaacattccttaaatattttgaagacatttatacagacaaaactatttatacataatgatacagtatttacataatgtttttgaacacaGAGGACAAACCAATTGCAAACTGCATTTCAAACACCAATTTAGACATGTACgtttaacaattaaaagaacagtACACTAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU224564 lncRNA downstream 372 11184230 ~ 11185919 (-) True G151773
TU224566 lncRNA downstream 5901 11179922 ~ 11180390 (-) True G151775
TU224565 lncRNA downstream 6859 11176563 ~ 11179432 (-) True G151774
XR_006247712.1 lncRNA downstream 26562 11155787 ~ 11159729 (-) True LOC122327759
TU224552 lncRNA downstream 140064 11043997 ~ 11046227 (-) True G151762
TU224584 lncRNA upstream 41308 11229986 ~ 11231103 (-) False cks2
TU224704 lncRNA upstream 108547 11297225 ~ 11297463 (-) True G151858
TU224733 lncRNA upstream 183451 11372129 ~ 11378059 (-) True G151870
TU224753 lncRNA upstream 277185 11465863 ~ 11466339 (-) False gna11a
TU224751 lncRNA upstream 277230 11465908 ~ 11467098 (-) False gna11a
XM_043223317.1 mRNA downstream 10296 11162617 ~ 11175995 (-) True tmem59l
XM_043223307.1 mRNA downstream 57621 11077596 ~ 11128670 (-) True ssbp4
XM_043223299.1 mRNA downstream 110638 11062765 ~ 11075653 (-) True fkbp8
XM_043223275.1 mRNA downstream 125220 11031722 ~ 11061071 (-) False ell
XM_043223274.1 mRNA downstream 125220 11031722 ~ 11061071 (-) False ell
XM_043223342.1 mRNA upstream 41296 11229974 ~ 11231249 (-) True cks2
XM_043223250.1 mRNA upstream 61310 11249988 ~ 11266155 (-) False ankrd24
XM_043223249.1 mRNA upstream 61310 11249988 ~ 11264084 (-) False ankrd24
XM_043223248.1 mRNA upstream 61310 11249988 ~ 11264084 (-) True ankrd24
XM_043223251.1 mRNA upstream 61311 11249989 ~ 11264079 (-) False ankrd24
TU224207 other downstream 763956 10419127 ~ 10422335 (-) True micos13
XR_006247701.1 other downstream 864628 10286578 ~ 10321663 (-) False polrmt
TU224081 other downstream 1222665 9957811 ~ 9963626 (-) True G151425
TU223881 other downstream 1683285 9498680 ~ 9503006 (-) False gpx4a
unassigned_transcript_2544 other upstream 159702 11348380 ~ 11348451 (-) True trnaq-uug_21
TU225293 other upstream 856791 12045469 ~ 12049531 (-) True si:ch211-117l17.6
TU225397 other upstream 954164 12142842 ~ 12145575 (-) True G152276
TU225529 other upstream 1372195 12560873 ~ 12567345 (-) False LOC122328185
TU225672 other upstream 1717471 12906149 ~ 12914226 (-) False cxcl12b

Expression Profile