RNA id: XM_043223358.1


Basic Information

Item Value
RNA id XM_043223358.1
length 4527
RNA type mRNA
GC content 0.50
exon number 22
gene id rubcn
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 17422118 ~ 17438914 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGAGCGCGCTTTATCGCAGACTTCACGATTGTCTGTCTTGTTATGGTGAGGGACGCCCAGTGGAAACACCCTCTACCTGTCCGCGGATTTTATGCGTTTAAACCCGACCTAAACTCTAAATCAAGCCGCTACCTAGACTGGAGATGGAAATATCCATGGAGGCGGAAGATGGAGAGCGCagATGGGAACACTGGAAGCTTCTGTCGAATCTGAAGACGACTGTCGAGGGGCTGCTGTCCACCAACAACCCTAACGTGTGGTCCCGCTACGGGGGTCTCCAGCGCCTGCACAAGGACATGAACAACATCCTGGGCCATGGCCTCAAACACGAGCAGatttACTATAAACAAAAAGACTACTGGCGTTTCGTGTGGTGTGTGCGGTATCTCTGTCCTCATCTCGCCCGTCATGTCGAACAGTTCAGTCAGCTGGAGCCGGTGTTGAGCAGCGGCTTCCAGAGTTTCGGCGAGGGTTACAAAGCCGAGCGATGGCTTCTGCACAGCCTCCAAGGTCACATCTTATCCGCCCAGCTCAAACCGCTGCTGCAGCACAAGACAAACACGCAGAAATATTACAACGACGGGGCCTTCTTGTTGAGTGAACCACACGTGTCCGCCATGTTCCAGTGCCTGGAGGCCGTAGAGCAGAATAACCCTCGACTGCTGGCTCTCATAGACACAGGCAGGCTTTCGCATGTAAAAGACTCTCCATTTGGTTTGCTGAAGAGTCAGAGTTTGTGTCTGCTTCCCGGGGCCACAGGAAGTTGGAGGCCTGCGGAAAATTCAGAGTCCCGTCGGCTTGCCACGTCCCAGAGCTGCCTTACAGAGATTCCCAACACCCCTCTGTCCAAGAGCAGCTCAGATGTCACTCCATCCAGCAGTGCTCAGGGAGCTCCATGGGTGTGCGGTAGAGGAAACCAGGAATCAGGAATCCCTCAAATTTCCTTCACCGAGCCCGCCTCACCTGCTCGACCCGAGATCCGGGATTGTGTGGAAGCGGATCTGGATGACGGCCCGGAGTACCTGGCCATCGGTAATCTGGGGAAGCAGAAACGGCGTGACTCGTCCAGCTCCACTCAAAGCAGTGAACACATGGCGACTCAGGGCGACGCCCACACTCCTTTGGCCCCGGCCCCGCCGCGCCGCTGCTCCTTCTCAGAGGCTCAGAGAACCACGGGGCGGAGCTCGAGGGGCCACATCCGATCTCTGTCCGACACGGGCATCTCgcaaaagcagaaaaatgGAGGGAATCACAGGAAAATCACCATTATTATCGAGGACCCCGTCGCAGAGTCTGTTGCATCTACACCAATTTCCAAGAGCTGCGGTCCTTTCTCACCCCagagcagcaacagcagcaccAACAGTTCCCTTTATATGGAGTCTAATGGCAGCCAGTACAACAGCGTCCCAGACGGATTGTTCCGCCGGCCGTCTGAGGGTCAGAGTCTGATCAGCTACCTCTCTGAGCAGGACTTTGGCAGCTGTGCTGATCTGGAAAAGGAAAACGCCCACTTCAGCATCTCGGAGTCTCTGATCGCGGCCATCGAGCTGATGAAGTGTAACATGCGCCGGCCGGTGGACGAGGCGGAGGAAGAGGGCGACAGCGACTCGGAAATCCAGCAGCTCAAACAGAAAATCCGTCTGCGCAGGCTGCAGATACGCCACACGCGGATGAAGCCGGCGCTCTCCTCTAATAACCAAGCACCGTCTGTGGATAGTGGTGGCTCACGGAGGAGCTCCCAGGATTCCTTTCACCCCTCTGACTCCGGCTCCGATAGAGACGTGGAGGATATCGAGCTCAAAGATGGCAGTGATGGTCAGTCCCTGCTGGCGGTGTCTCAGAGCGGCCTGTCCCTGTCACTCGCGTCCCTCTTCTCAGATGCAGACATCAAACGCAGTGCGTCCAGCAGCAGGTCCTTCCTCAGCTCCGACTCCATCTCTCCATCGGTGCTGCAGTCCAACTCGGCGGAGTCGGTGGCGATGGGTCTCCTCAGACAGTTTGAGGGCATGCAGCTGCCCGCCGCCTCAGAGCTGGACTGGCTGGTTCCAGAACAAGACGCCCCGCAAAAACTTCTTCCGATACCGGATTCTCTTCCCATTTCGCCCGACGACGGCGAACACGCGGACGTTTACAAGCTGCGCATCCGAGTGCGAGGGAATCTGGAGTGGGCTCCTCCCAGACCGCAGATCATCTTCAACATCCACCCTCCTCCAAAGAGGAAGGTGGTGGTGGCCAAACAAAACTACCGCTGCGCCGGCTGCGGCATTCGCATCGATCCAGACTACATCAAGAGGCTGAGGTACTGTGAGTATCTGGGCCGCTACTTTTGTCAGTGCTGCCACGAGAACGCGCAGGCCGTGGTGCCGGGAAAGATCCTCAGGAAGTGGGACTTCAGTAAAAGCTACGTTAGCAACTTTTCCAGGGACTTGCTGGCCAAGATCGCGGGGGATCCGCTCTTCAACCTCGGTGACATCAACAGCGGCCTGTACAAGAAGGTCAAGGCCCTGGAAACAGTGCGCGCACTGAGGGAACAGCTGAACCACATGAAGAATCTCTTGCGAACGTGCCGTTTGGCTACAGAGGTTCTGGATCAGTTCGACGCTCTTCCCGGACATCTGACAGAAGACTTCCACCTGTTCTCTGTCAGCGACCTCACGGCCGTCCGCAGCGGCGCTCTGGGGCCGAAGCTGAGAGACCTGCTGCGCCTCGGCTCCAGCCACGTCACGGACTGCATGCTCTGCCAGGCCAAGGGCTTCATTTGTGAGTTCTGTGGAAATGACAAGGACATTATCTTCCCCTACGAGCTCAGCAAGTGCCTGCGCTGTGAAGactGTCATGCTTGCTATCATAAGACCTGCTTTAAAGGAGGAAAGCAGTGTCCTCGCTGTCTGAGACTCGCCGAGAGGAGAGAGCGGATGGCTCGCAAGAACATGGAGGAGCAGGAGGACAGAGAGGAGGACGCGGCCAGTGGGACCTAACACACAACACCAGTAAGATTTCACCAGAGCACAGCGCAGCAGCGAATGTACCGACTGATATTCAGCCAAACGTTTCTTGATTCCCGTCCCAAATAAGCTGACCGCAGCACAATGGATCATTAATGCTAAAGAGTTTTATGTGCAAACaagcttttctgcttttaagGACTTGCCGccttcagacaaaaaaaaaaatcgtattttACTTGGtgccatgtttttgtttgtttgtttgttgcctCCGTCCTTAAACATCCGATCTGTTTTAATCAACTGTCGTAAGTATAATGTTTTCGTCTGTCTGCTTTTCGACGCATAACCTGTCGCGTGCCTCTTTAACGGCTGTTTGTTCGTTTCGATGCGAGACGGAGAAGGGCAGCTGAACTCCAGCGAGTTTTGCACAACCTTTGTTTCCCGAGAGGTTTCTAGAAGTGCCAGGTTCAAGCTTACCGTGTTAAAGATTAAAGCTACTAAAACGGAAAATGCCTCATTCGTGAAAAGTGAgccaaaaaatgatttttgtaaataaaacctatttattttaatgcaacaaTTTACCTTATGGAAACTACaaatttttatgcaattaaaagCGGAAACTGTCATATTGAACTGAATGCCATTCTTAATgtaccaatttttttttcgcGTTATTTTGCACAGAAATTCAATTCgccattttagacattttctcCAGTTATTCGTAAAACAATTCGTGCATTAATTGttttccaaacattttaacTAGAACTATAAACAAACCAATTtcgaaaaaaatctttattttctgaCGTTACTGTTGTTTTGCTCAAACTTCACAAATGAGGCCCGACGCTGGTCTTTTTAATTGTACGTTTGAAGGCCTTTTTGCTTTAACATTTTGCACCTACCAAAAAAATGGCACTTTTCAgtatttcctttcttttgtttgacaaaaaaaaatgtcttgtcgGTTCTTTAATTTGCACTAGTTTGATCGAGAATTGTATTAATGTTTGAGCCGGAACATCATTCCAACATCTCGCGTTCAGTCCAGGATCTTGCACTGTGGCCTGTAATCGTCCAATGAAGCTACTcgttaaaaaagaaagatgtaCCAAAGTGTTAATTGATTAAAAGAGTTTATTACATCGGTAAGTTGTATTAGCGTTCTCTACACCGTACATACTGGACCTAAGTTAATTTAAGTAgcgtttttaaagaaaatatattcaagaGCCCTTTTGTTTGCTGCTGCGAGTATATCTGAAGCAATAACGACGACCATGTGCTATTCTGCCACAAGCGTTAAAAGACTTGAATGTACTGACCTTAAGTATGCgagactgaatgaatgaatgaatgaacgaactTGATTTTGTGTGGTTGCTTATGAGATCTAATGTTTTATTCGATCCTGCTGACGTTGTGTCCACTCGAGCTTATTGTAAAATTACTGAGTTGCCTTTTTTATTCAGGGGCTTTTGATGCACTATTTGAAAAGATGTACTTTtcttattatgtaaatatatgtaactGACAATTAAAGATGTTTAGAGTGCCTTA

Function

GO: NA

KEGG:

id description
K19330 RUBCN; run domain Beclin-1 interacting and cysteine-rich containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227465 lncRNA upstream 2174 17419724 ~ 17419944 (+) True G153645
TU227415 lncRNA upstream 349182 17072514 ~ 17072936 (+) True G153610
TU227383 lncRNA upstream 616510 16805182 ~ 16805608 (+) True G153583
TU227369 lncRNA upstream 662538 16759145 ~ 16759580 (+) True G153569
TU227368 lncRNA upstream 663991 16757795 ~ 16758127 (+) True G153568
TU227470 lncRNA downstream 2959 17441873 ~ 17442179 (+) True G153647
TU227476 lncRNA downstream 32986 17471900 ~ 17472846 (+) True G153653
TU227477 lncRNA downstream 34327 17473241 ~ 17474600 (+) True G153654
TU227589 lncRNA downstream 444699 17883613 ~ 17883921 (+) True G153737
TU227592 lncRNA downstream 447732 17886646 ~ 17886876 (+) True G153740
XM_043223184.1 mRNA upstream 2874 17399305 ~ 17419244 (+) True tsc22d2
XM_043223185.1 mRNA upstream 2874 17399306 ~ 17419244 (+) False tsc22d2
XM_043223415.1 mRNA upstream 34039 17371155 ~ 17388079 (+) True rnf13
XM_043223414.1 mRNA upstream 34039 17371156 ~ 17388079 (+) False rnf13
XM_043223130.1 mRNA upstream 52221 17353817 ~ 17369897 (+) False srfa
XM_043223460.1 mRNA downstream 51830 17490744 ~ 17492655 (+) True dynlt2b
XM_043223761.1 mRNA downstream 70814 17509728 ~ 17520426 (+) True hykk.2
XM_043223760.1 mRNA downstream 77216 17516130 ~ 17520426 (+) True LOC122328058
XM_043223106.1 mRNA downstream 257961 17696875 ~ 17741017 (+) True LOC122327646
XM_043223108.1 mRNA downstream 257961 17696875 ~ 17741017 (+) False LOC122327646
TU227461 other upstream 2885 17415453 ~ 17419233 (+) False tsc22d2
XR_006247623.1 other upstream 676043 16600632 ~ 16746075 (+) False dock3
TU227194 other upstream 922705 16493702 ~ 16499413 (+) True G153432
TU227165 other upstream 1035942 16317461 ~ 16386176 (+) False rpl32
unassigned_transcript_2576 other upstream 1272274 16149772 ~ 16149844 (+) True trnaa-agc_28
TU227593 other downstream 487437 17926351 ~ 17927244 (+) True G153741

Expression Profile