RNA id: XM_043223365.1


Basic Information

Item Value
RNA id XM_043223365.1
length 2250
RNA type mRNA
GC content 0.43
exon number 4
gene id si:dkey-246e1.3
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12950609 ~ 12956308 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

taaatgtttgacagcactactaaatagcaatatttaaaacattataaaaaaaattacagagatTGCTGACAATGAAATTGCTAAAGAAtgcaatcaaattaaataaaaaaaatgaaaacataaaaataagtctgagtaaaaaaattatcattaaaaaaatccattgaaaaataaattaaggataaaattaaacaatgataaaaaagtttagagttcagattttattatataaaatataattagctTTTCAAATAGGAGACAACAAAAGCGTCTTTGTGAACAGAagtatgatttacatttttgcctGATGGAGTCAGGCTTTGAGACTAAGATCCGTGTGTTTATATGGCAATGCTGGTTCTGAAGCAATATTTCTCAGATGAATGGACTTCTGATGCTGAAGATAAGACAGCGTTGCATAACACTTATGAAAGACAATATCACTACTCTATATATTTTCCTCAGAAATCTGCTGCGAACtgttagtatatatatatatatatatatatatataataagtgttttgatacttttgcttttttaaatgtttaattttactaaatattcaCTTCTATAATGTAATGTCGTTTCAGCACTTCAGGACTATAGCACATATAGATACATGTATGTATAGCATATGTTGCACATGTAAATATCCAGTGTTTATCCTCTACATGTAAGCTATGTTAGTTCACCAAGGTCACAAAGCCCCTATTAGTATGTTTAATGGGTCATGGTCCACGTAAAAATACACCGAtatacttttctttcttctttttatcaGCATTCTCAGAATCACGAGATACGAGCTCAGAATCGTTCGCGaattctttcattctttttcaaCTGTCCGTTTTTCCTCACAGTTGAGAGTTTACCTCACCAGCGTTTGCCCGCGAAATTCTGCCTCCGTGACGTGACCGCTCCCTTTAGAATCCCTCGCGCGATCGATATTTCGTTGCGCACGCGCTGCTCTGGGCTCGTCGTGAAGGAACGATATCGATTTCTGaaattaataatagttaaaacGTTAGGCAGACCGCTGGGAACGGCCCGCGGCTTTTCGCTCATTGGCCTATTTGTGTGGCAGCTTTTGGCGAATGGTGAGAACGACCTTTTAGTGTTACCGTATCTGGCGTTTGTCATAAATCTGCATTGAAGCCTCTCACCGACCCGTGCCCGAGTCCGATATAACCGAGGAGGGCAGAGAGGTGTCAGTGATCCCATGAATTCTTCTTCGCCGGGCACACGGTTCTGCCTCAGATCCGCCGACTCTGGCGCAACATGAAGAGGAACGCgtttatacaaataattaaacccGGCGCTCTTTTACGACCCGTGTTCGGGCTGGAGCCCAAACAAGAAGGTAATTTGTCCCACATGTTGCCGTCGGGGCTTGAAATACAGAGCTACGCGATTGTACCTTTCGGCGCGGGTCTTAAAAGAGAAATACTCGATTTTCATTCGCCATAAAATTACGAGACGCAACggacaaacaaatcaaatgcttcgcgggaaaaaaaaatggtaggcCTTTGCAAAGATAGGCTAAATGTCGTTGAGCGAAGAGCCAATAAACCTGCAGCTCATAGGTCAATGATTCGTGACTCGCTGTAAAACGGTTTCTGTGtagtattttgaaatatgaatcattttatgaTATTTGCTCGCGCATCCAGCTCGCGCTTGACACAGAGCGGATATTTACGCGACCGAGCAGTTTGCTGGTCACTTCTGGCCTATGCCTTCCGCAGCATGAGCCTCACGGGGATCGATCCGTCTCTTAACGGGACGGCTTTATTGAATCCGAATGACAAAGAAACACAAGCCGCTCTCTACGAAGTCAAGGTGTTCAACATCACCCTTTGTTCAGTAGCTCTGTGCGTCCTGACTGTGACAGGAATCATCAGCTGTATCTCGTACAGAAGACACAGAAGGAAGTGTAAACGGGCTCGCGTCTACGAGAGCGCCGTATCCAGCGAGGTTCCCGAAGAGCCCGTGGGTGTTATGTGCGTGAGGAAAACGCACAGCTTCCGCAACCCGCTGGCCCTGTTCAGAAGGCAAGAGGGGCCGAAGGACAACTCTCGCATCCACTACATCTACACCAACCCCCTGCCTGTGGGACACGAGGAGGACAGGACGCCCCCTCAGGCCGTGTCCGCACACGCTCCACTCACGCTGCAGGACTACGCCAGCGACCCCCGCAGCGGCATCATCCTGGCCCCGCCCGTTTTTTACATGCAGCTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225156 lncRNA upstream 158922 12754346 ~ 12793226 (+) True G152142
TU225153 lncRNA upstream 204192 12747581 ~ 12747956 (+) True G152140
TU225126 lncRNA upstream 295719 12655949 ~ 12656429 (+) True G152122
TU225074 lncRNA upstream 297074 12604088 ~ 12655074 (+) True G152083
TU225193 lncRNA downstream 10015 12966323 ~ 12970358 (+) True G152161
TU225233 lncRNA downstream 60935 13017243 ~ 13028266 (+) True LOC122327168
XR_006247613.1 lncRNA downstream 60954 13017262 ~ 13028094 (+) False LOC122327168
TU225238 lncRNA downstream 94642 13050950 ~ 13051829 (+) True G152195
TU225239 lncRNA downstream 99040 13055348 ~ 13055886 (+) True G152196
XM_043223175.1 mRNA upstream 76814 12872927 ~ 12875334 (+) False tmem186
XM_043222426.1 mRNA downstream 106995 13063303 ~ 13074913 (+) True LOC122327210
XM_043222348.1 mRNA downstream 119103 13075411 ~ 13079637 (+) True LOC122327156
XM_043222349.1 mRNA downstream 119343 13075651 ~ 13079637 (+) False LOC122327156
XM_043222355.1 mRNA downstream 155174 13111482 ~ 13112733 (+) False LOC122327162
XM_043222428.1 mRNA downstream 220119 13176427 ~ 13180221 (+) True LOC122327212
TU225049 other upstream 528226 12409306 ~ 12423922 (+) True G152065
TU225046 other upstream 528226 12414572 ~ 12423922 (+) False G152065
TU225014 other upstream 606398 12345206 ~ 12345750 (+) True G152043
TU225015 other upstream 606398 12345206 ~ 12345750 (+) False G152043
TU225002 other upstream 657431 12293400 ~ 12294717 (+) True G152032
XR_006247603.1 other downstream 151198 13107506 ~ 13112733 (+) True LOC122327162
XR_006247605.1 other downstream 153387 13109695 ~ 13112733 (+) False LOC122327162
XR_006247602.1 other downstream 153393 13109701 ~ 13112733 (+) False LOC122327162
XR_006247604.1 other downstream 153502 13109810 ~ 13112733 (+) False LOC122327162
XR_006247606.1 other downstream 153507 13109815 ~ 13112733 (+) False LOC122327162

Expression Profile