RNA id: XR_006247718.1


Basic Information

Item Value
RNA id XR_006247718.1
length 2572
RNA type transcript
GC content 0.40
exon number 8
gene id LOC122327776
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 7609856 ~ 7618398 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTACAGGTCACAACCATTTACAAGGCAACAGAAAGTATTTATGGCTAGACTGGGTGAATACGTAGCGTGCGGCATGTCACACTGGGACGGAGATTACGTCTTGGATGAAGAGCTCCAGATAAAATGGTGCAAACCCACCAGAATAAGAAACGCTGAAGTGAATGGAACAGAATTACGAGAACTGACcgaaaaaatcattttctacTCAAGAttttcaGCTTTAGTTCTGCTCACATTCCTTGCCTTTATTATCATCGCTGCCGTAAGTTGCTGGGATTGTAGAACAAGATGTCTGGAGCATCAAGAAAAGCAGAATAAGCCAACACAACTATCAGAGTCATCCATCTACGGCTCAGAGGTTGAACTACAGCGATCCATATGAAAACATCAGGGAGATCTGCATAAAAATGTGTCTCTGTTAAGactgcaaagaaaaacaacttgAATGACGGATTCTGAATGCACAAATCAGCATTAGTAATTGAGATTGACAGAATCAGCTGACCAATCTAAAGCGCCAGAAGagtgaaagtaaaaatgtgaaaaaagtgaaagaacAACTAACTACACCTACCTGGATGCAACACTATCACCTGTATGAACTGGAATGGACGGTACGCCTGCGACAAGGACCTGCATCCGATTTGCTTGAACTGGTGCAAGCCTACTGACTTAAACCAAAGAGAAAATCAGACCGAGCTTTATGAACGAACAAGGGAGTTGATTGATCAGTCAAAGTGTGTAGGTTATAGCCTGGCGTTCGTCTTCTGcattataacaattattatcGTGACCGCTAACGACTGCAACCGAGGTCGCATTTCAGCCTGCTGCAGAAGCGCAGATCcaaagagagaaggagaggagCGGCGTGATGTGCTGGCAAACTTACTCAGGAAACAAAGTGAGGAGCATGAGTTCAAGCTTCAAGATGACGGCTCACACAGACATCCAAGTCAAGCTGCAGAAATAGAAGAAAAAGTTTAGATCAATCCCAGATCACATGTTGTCTACACTATATACTCTATCACACTGAAATATAACAATTCAATAGTACATTTTCTATTATGCATTATGAATTCATCTCTTACTTGTATGTGTTGGGCGACATTTTGAGTTTCTCGTATAACTTTATCTTGTTTGTATCATTGCAGACCGAGCGGGAGCTATGTGAATTATTATGGGGGTGTTGATGTTGTCCCAGCATGTTTGCGTTTGTAAATGTTTCtacaatatgacaaaaaaaagtgaaaatgaaaacattcataaacTGTAAGTGTATAGTAAGTGTTGAGAGGGCATTGACAATGCAAAAAGCCAACAATTCCTTTAGATTTTCACTTTATAATGTGaaagtgaaacaaaatgtaGCAATGCAATGTTGGCTAATAACTCGAGAGCTTGAGATCTTGAGAATGTAGATGACGCATACAGGCATTTAAGGGCAAGAAGGAAATAATTCAGGTACCTGCCCATGCATGctttaatataaagtatttgACAAGTCAGGGATCTGTGAAACACAAGAGACAGCAGAATAGATAGTCTAAACCACTTTCCATTGCATCACCGATAACAAATCTACGACTTTTTCTCCGTCTTCTTTTCCAACAACCACTTTGTTTTAAAGacaaagacaaaaaaaataaaaacaaacgaatAAATGCGTTGTGTTGTCTAGCTCTTAAAAGATGTCGTCACTGCAAAACTTTTCCAAGCACTTTAAAAGCTATCTGAATACAACTGCTGTTTTCACCACTTTTCCATTAAGCCTTTTGTTATTTGGATTAGAGGCATTGATGGACACCCAGTTTTCGTGCCCGTGTGGAAAACTGTGGCAGAAGGAACTAACAAGCTTAATGTTTGCTGCACCTCCTTGCTTTGCTTTTATGATAACGTTCCTCCTAACAAGACCtttaaaaaacaccaacatCTGCTGTTCTCTAGGACGCTTCTCCACGAGGTGTCCAGACAGAAAGAACAGATGCAAtactttctgtttctgtcttaAATCTTTCCTGCACTGCCTGATTCCCCCCTTTGTTTGGGTACTGCTCTTGTTGTACGACGGTGATTATTTTGCCTGCGGTCGATCGAACTGGGAAGGAGAGTACGTTTATGATGAAGTGCTGCTAACAAAATGGTGCAAACCCACTGGAAAGGATGCAGGCAGAGAGGCTTCTCTACGAGATCTGACTATTATGAATATTGTATTGTCAAAGATGGCGAGTTACGCTCTATTGATTGTCTTCAGCATTATAACAGTCGTGGTAGTAGCTGTGTACGACTCGTGCAGATGTGGAGAAAAAAAGCTGCTGCAGAAACCCAGATTCTGAGCATGAAATCTTGGGGCAGGGGAATGAACTGTCTTTGGAAATTTAATGCATAATTGTTCTGAATAAGTACGAGAGGAAACATGGTAACATGGTAATGCGATTGTAGTATATTTAACATATAGGCTACATCATGTCACATATTATTGCTtgtattgtacttttttattatccttttttatttgtacgATGGCATTAAAAAGGTcaagtttaacaaaaataaatgggttcatttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222928 lncRNA downstream 111367 7486176 ~ 7498489 (-) True G150628
TU222925 lncRNA downstream 124922 7483864 ~ 7484934 (-) True G150626
XR_006247703.1 lncRNA downstream 139712 7469472 ~ 7470144 (-) False LOC122327668
TU222918 lncRNA downstream 140282 7450248 ~ 7469574 (-) True LOC122327668
TU222888 lncRNA downstream 186457 7409413 ~ 7423399 (-) True G150596
XR_006247719.1 lncRNA upstream 6301 7624699 ~ 7628851 (-) True LOC122327778
XR_006247773.1 lncRNA upstream 28713 7647111 ~ 7652174 (-) True LOC122328071
TU223036 lncRNA upstream 239925 7858323 ~ 7866902 (-) True G150706
XR_006247569.1 lncRNA upstream 282190 7900588 ~ 7952064 (-) False LOC122327072
XR_006247591.1 lncRNA upstream 282190 7900588 ~ 7952042 (-) False LOC122327072
XM_043222261.1 mRNA downstream 8776 7548350 ~ 7601080 (-) False si:ch211-246m6.5
XM_043222260.1 mRNA downstream 8776 7548350 ~ 7601080 (-) True si:ch211-246m6.5
XM_043223399.1 mRNA downstream 67796 7537637 ~ 7542060 (-) False si:ch211-246m6.4
XM_043223398.1 mRNA downstream 67800 7537637 ~ 7542056 (-) True si:ch211-246m6.4
XM_043222240.1 mRNA downstream 84239 7524436 ~ 7525617 (-) True LOC122327064
XM_043223375.1 mRNA upstream 952 7619350 ~ 7622439 (-) True LOC122327777
XM_043223883.1 mRNA upstream 11549 7629947 ~ 7631701 (-) True LOC122328180
XM_043222494.1 mRNA upstream 40935 7659333 ~ 7661731 (-) True si:dkeyp-122a9.2
XM_043222495.1 mRNA upstream 43390 7661788 ~ 7889885 (-) True lrp1ba
XM_043222227.1 mRNA upstream 351947 7970345 ~ 8065690 (-) False elfn2a
TU222808 other downstream 554654 7030307 ~ 7055202 (-) False LOC122327113
TU222752 other downstream 696298 6906000 ~ 6913558 (-) True G150492
TU222739 other downstream 720199 6854770 ~ 6889657 (-) False nab1a
TU222740 other downstream 728387 6854770 ~ 6881469 (-) False nab1a
TU222746 other downstream 740310 6867843 ~ 6869546 (-) False mfsd6a
TU223633 other upstream 1265723 8884121 ~ 8886941 (-) True G151107
XR_006247692.1 other upstream 1395150 9013548 ~ 9171931 (-) False nfia
XR_006247693.1 other upstream 1395150 9013548 ~ 9171929 (-) False nfia
XR_006247696.1 other upstream 1395152 9013550 ~ 9171923 (-) False nfia
XR_006247694.1 other upstream 1395152 9013550 ~ 9141867 (-) False nfia

Expression Profile