RNA id: XR_006247720.1


Basic Information

Item Value
RNA id XR_006247720.1
length 3979
RNA type transcript
GC content 0.49
exon number 12
gene id gatad2ab
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 9970622 ~ 9993441 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTTGAGGCGTCAGGGTTTTAACATGAGCTCCGGGTCGACCTGCGCCGTTTCGGGATGCTACAACAACTCGAAGAAACTGAAGAGTTTTCAAGAAAATGTCTGCGTAGAGCATCAGAAGATAAGAAACGAATGCCCGTGCCCTGCGCCGTACGCTTTATACTGTATGCCGACGAAAGAGGAGAGGAAGCGGGCTTGGCTCGCGGCTCTGAAATTAAAAAGTCCTCCGAAGAGAGTTTACGTGTGCTCGTTTCATTTCGTCGACAAAAAGCCCACAGATCTACATCCGGATCCCGAGCTCTACCTGGGTCACAACCGCCCTCTTCAAGGCAGGCGGAAACAACTCCAGGAAGCTGAGGGACTTGGCGAGAAGATGTCTGAGGACGCAGTGCGTCAGACGCGTAGTCAAAAGCGGGCGCTGGAGCGAGATGCCCCTGCTTCGGAGGCCGACCTGAAGAGGGTCAAGCTGGAGAAAGGAGAGCTGGGAGCTGTGGATGGACTCAAGACCAGAAGCGAACAGGCCAACAAGGTGGCTAACATCCTGCGGGCCGGGGAGGTGAAGGCCACCATCAAGGTGGAGGTGCAGACCAGCGACGAGCCTGTGGACATGAGCACATCTAAGAGTGACATAAAGAAAGAGCGACCTCCGACGCCAGATGATGTCATTGTTCTGTCGGACAATGAGCCCTCTAGTCCTTGTATGAATGGGGTCGGCTACAGTTTTAAGAAGACCGATACTGAGATGCTAATGAAAAGCAGCCCGGCTGAACGCGAGCGCATCATCAAGCAGCTACAGGAAGAACTGCGTCTGCAGGAGGCCAAACTCGTCCTGCTGAAGAAACTTAGACAGAGTCAGACCCAAAAAGATGTTGtgcaaaagTCAACCAATTCTGTGGCTGCTCCTCCGCCGCTCGTCAGGGGCAGCATCTCGTCCACTAAAGGACCCCTACAGgtcTCCAATCGAAACTCAGGGACAGTCATTCCTCCTCCTCTGGTTCGAGGTGGAGCGCAGGTCTCCAAGCATGGCTCCCATAATACCGTAGTCATGCCACCCTTAGTCAGAGGCTCCCAGCCCATCTCTGTGACCCCGCAGCAGATAGCGAACCTGCGGCAGCAGCAGCACTCGGGGTCTGGTCCTCCTCCTCTGCTGCTGGGCGCTCGCACCTCCGTACCCACCGTACAGGTGCAGGGCCAGAGGATCATCCAGCAGGGCCTCATCCGTGTGGCCAATGCAAACGTCCTGGTCTCACAGGCATCTTCCACCGGTTTGAAGAGCTCTCAGTCTGGTCTGGGCAGCAGCGCCTCTGTCAGTGAGTCTCCTGCCAGCCGACAGGCCGCTGCCAAGCTTGCGTTACGGAAACAGCTGGAAAAAACCCTGCTTGAGATACCGCCACCTAAACCTCCAGCACCGGAGCTCAATTTCCTGCCTTCTGCAGCTAATAATGAGTTCATCTACCTGGTGGGCCTGGAAATGGTGGTCCAGAACCTGCTCGATACACTGGCTAAAAGTAAGCAGCAGCAGGCAGAGTCTGCTTCTACCACGGCAACCAAGGAGCCCTTCACTTGCGCCCAGTGCCAGACGGACTTCACCTCTCGCTGGAGGCAGGAGAAGAGCAGCGGCTCCATCCTCTGTGAGCACTGCATGAGCTCCAACCAGAAGAAGGCCCTGAAGGCTGAGCACACCAGCCGCCTGAAGGCCGCCTTCGTCAAAGCCCTGCAGCAGGAGCAAGAGATCGAGCAGCGCATCCTGCAGCAGGCCGCCTCGCCCGTCTCCAAGACCTCCACCACctcatcttcttcatcctcGCCCGTGATTAAGTCCGATCATGTGCTGGTGTCACCGCAGTACAAGCAGGTGAGCACAGCGTCGCTGACCCAGCAGAGCAGCAGGGGGACGTCAGTCGGGAGATACCACACCATCAAGCAGACTCCAGGCCAGCTGTCCCGTAGCGTGCAGCAGGCGGTGAGTGCGGGGGCTCGCGGGGTGAGCCACAGCTTCTCCACTTCCTCCCAGCTCCAGAACGCCGTCACCGCCGCCGCACTGGTCAGCAGGCCAGGTAAGCATGTCGTGAGGGCTGGGGAAAAGGGCACCAGCAGCAGAAACCCCACCACCAATACCTGGAGGAAACAGAACAGCGGCACTGCAGGTGTCACCATGGCTTACGTGAACCCCAGTCTGTCTGTACACAGGACGACGTCTCCGGTGGACCGTCAGCGAGAGTACCTCTTGGACATGATCCCTTCCCGCTCCATTTCCCAAACGGCAAACACATGGAAATAATGCCCTGATGTCAATCGCTCTCAAATTTCTCAGAATTATAATCCTGTCTTTTTGGACATTCGGTCGGTTATCAGTATCAGACAGCCAGCCgttaagcaataataaaaatgaaaaaaaaaactatattttcgCTCTATTTCTCCTTTGTTCCTGAGACTCTTAGTTGTACAGTCTAAGGTAAGACCCCATAGGCCAACAAGCGTCCTAGAGGAGAACTGTACCGGGATCAGTGATCAAGGAGACCCAAGGACCTTTTCTACAGGCCTTTGTAGCTATCTACTGAATCCCTCCATTACCCAACGGGCTCTAGTGGTCTAATACACATCACCCACAACTCCCAATTCACGGCCCTCCAGGAAGTGGAGGACACAGGACCGTAGAGTTCCTGCATGACGCCAGGGACCATCTACACAGCTTTAGCTACGTTTTCCGACCCACAGCGTCCCCTGAACAGATATGggagtgtatgtttgtgtatttgatgtcaatacattgcttttttttgttttgtttttagcttcaCTGTGGACTCATTCCACCCTTTTCAAAATGGCCTTTTTTTAAAGGCTTGAAATTTAAGGAATTGTTATACTGTTGAGGTGGTTATACATCTGCTGGTGTAGTGTGTATTTTTGAATACTTTgggttgtttcttttttttttttcttcttctttgtaagcttataaaagacatttatccGAGAATTGTGCATCAGGGATGGTTACAGAGATGGACGTAACTAACAAAAAGCAGCAGCCGCAACAGGACTACTAATAGACCTTCATGTTTGAGCGATTTGTTTATGAGCCTGacggtattttatttttattttttttctttgcagaaaCAATGGCTATGTTACGCTTTTAGTTACCGTTGTGATGTGCTCCCCCCCCATAGGCTTTCTTGTAACAGCATCTAGGTAATATTTGgatgttgtattatttataaatgtcactttagATGAAGGATATCCCATTAGCTCTTTCCAAATAGTTACAAAGCCTTGTGAATTTAAGATTGGACTGTATTTAGGATGTTTAAATGCAAACTTCTTTTGTCTAATGCGCAGTTCATTCACGTCCtgtctgccttttttttttttttttttttaagatcctGTTGGAAGTCGTGCCGCTTAAGTCACGGCTTAAATTTTCCTTAAAGGAAATGTTTGGGTTGAAAGCATTACTGCTTATTGAATGTAGCACACAATCTTAGCTAAATTGAGTCCTACCTGTTAGGTGGTGGTCATGTTATTTTTACCATCTCTTATTTTCCTTTCATCTGATTTGATTTGCTAGCAGTACATTTGGTATTTTAGCTAAACAGTTATGTATGTTATATACGACAGCTCGGGTCCTTTTTGTCATCGCAGTCCATGAACGCGTTGAGTCAGTTCTGCTTCAGTCGATTTGTTTTTCGCTTTTCTCGAGGTGATCCGTTCAGTGATCATGAATGCCCGTGGAGCCTTTCGGACACAGAGGCCCCCCCCGTTTCTGACTGCTGTTCTGACTACTGCCTGCTGCTGACAACTAACACCATTCCATTTCCCCCTGAGATGCTGCCGTTGTTTATTGTGGAGCACCTCTTTtaagaattgtaaaaaaataataataataaaacaaaaaaattttttttttcatctgtttctGCTCTATcagttaataattataataaaaactaattttaaccTGTT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247776.1 lncRNA upstream 7202 9923614 ~ 9963420 (+) False LOC122328159
TU223958 lncRNA upstream 73783 9896581 ~ 9896839 (+) True G151334
TU223956 lncRNA upstream 74322 9895441 ~ 9896300 (+) False mef2b
TU223957 lncRNA upstream 75295 9895046 ~ 9895327 (+) True G151333
TU223951 lncRNA upstream 77133 9888200 ~ 9893489 (+) True borcs8
TU223964 lncRNA downstream 60477 10053918 ~ 10079639 (+) False G151337
TU223965 lncRNA downstream 81395 10074836 ~ 10079639 (+) False G151337
TU223961 lncRNA downstream 81537 10074978 ~ 10080145 (+) True G151337
TU223999 lncRNA downstream 88341 10081782 ~ 10082620 (+) True G151358
XR_006247731.1 lncRNA downstream 143859 10137300 ~ 10140154 (+) True LOC122327864
XM_043223144.1 mRNA upstream 59829 9895748 ~ 9910793 (+) False mef2b
XM_043222234.1 mRNA downstream 3038 9996479 ~ 10028474 (+) True yjefn3
XM_043223410.1 mRNA downstream 37429 10030870 ~ 10044212 (+) True cilp2
XM_043223411.1 mRNA downstream 77375 10070816 ~ 10072852 (+) True si:ch211-212d10.1
XM_043223124.1 mRNA downstream 195773 10189214 ~ 10208785 (+) True cbarpb
XM_043223395.1 mRNA downstream 230149 10223590 ~ 10231309 (+) True fstl3
TU223980 other upstream 6988 9923547 ~ 9963634 (+) False LOC122328159
TU223981 other upstream 6988 9928679 ~ 9963634 (+) True LOC122328159
TU223982 other upstream 6988 9931139 ~ 9963634 (+) False LOC122328159
TU223952 other upstream 77133 9888200 ~ 9893489 (+) False borcs8
TU223817 other upstream 390471 9577679 ~ 9580151 (+) True G151232
XR_006247780.1 other downstream 715603 10709044 ~ 10709110 (+) True LOC122328232
TU224353 other downstream 812611 10806052 ~ 10837365 (+) True G151620
TU224351 other downstream 822694 10816135 ~ 10837365 (+) False G151620
TU224458 other downstream 925619 10919060 ~ 10921928 (+) False si:dkey-172o19.2
XR_006247707.1 other downstream 1325248 11318689 ~ 11323940 (+) False mier2

Expression Profile