RNA id: XM_043223385.1


Basic Information

Item Value
RNA id XM_043223385.1
length 2726
RNA type mRNA
GC content 0.50
exon number 15
gene id pak2b
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 2132741 ~ 2142363 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCACCGGAAGCAGTCGCTGTCTGTTTGCTGCAGGCGAGGGCAGAAAGAGACGCTGCTGGGCGCCTCCCCTTCCCCAAACCAGCACAAAAAAGCTGCCGAGACCAGCGGTACGCGGCGCACGACCCATCGGACGGGGCTCCCGCGTCGCCTCACGCCTCTCCCCGGACAGAGCAGCTCCCCCGCGGCCCGCCGGAGCGCGTCGCGCCGCACTTCGAGCTCCGCTTCACAGGACAAGCCGCCCGCTCCGCCCGTCAGGATGAGCAGCACCATCTTCAGCGGCGGAGGCAAAGACGGCCTGGCGGCCAACCACAGCTCCAAGCCCCTGCCCTCGGTGCCCGAGGAGCGCAAGCGCAACAAGATCTACTCCATCTTCTCCGGCGCCGAGAAGGgcGGCCGAAGGAAAGACCGAGATAAAGAGCGTCCCGAGATCTCGCCGCCGTCGGACTTCGAGCACACTATTCACGTGGGCTTCGACGCCGTTACCGGAGAGTTTACAggGATGCCCGAGCAGTGGGCGAGGTTACTGCAGACCTCGAACATCACCAAATCAGAGCAGAAGAAGAATCCTCAGGCCGTCCTCGACGTGCTCAAGTTCTACGACTCGACAGGAAACGGCCGACAGAAGTACCTCAGCTTCTCCTCAGAGAAGGACGGCTTTCCCTCGGCTGAACAATCACCTGTGAAGAAATCCCCAGAGCCCTCGTCTCCAGTCAAAACGGtggatgatgaagatgacgatgaCGACGAGGAGACGCCGCCACCTGTGGTCGCCCCACGACCAGAACACACCAAGAGCGTATATACGCGACCATCGGTCATCGACCCCCTTCCTCCTCCGGTGACGTCTCCGGACAGCGATGTCGCGTTGAAGGCTGGCGACCGACAGAGACCCAAAAAGGGCAAGATGACAGACGAAGAGATAATGGACAAGCTCCGAACTATAGTCAGTATTGGAGatccaaaaaagaaatatacacGATACGAGAAGATCGGACAAGGGGCTTCGGGAACGGTGTTCACTGCCATCGACGTTGCTACTGGACAGGAGGTGGCCATCAAACAGATTAACCTGCAAAAGCAGCCCAAGAAAGAGCTTATCATCAACGAAATTCTCGTCATGAAGGAACTGAAGAATCCAAACATTGTCAACTTCTTAGACAGTTTTCTGGTAGGTGAGGAGCTGTTTGTCGTGATGGAGTACTTGGCTGGTGGCTCGCTCACAGATGTCGTAACAGAGACCTGTATGGACGAGGCTCAGATCGCCGCTGTATGCCGAGAGTGTTTGCAGGCTCTGGAGTTTCTTCATTCTAATCAAGTCATTCATCGAGACATCAAGAGTGACAACGTGCTACTGGGAATGGACGGTTCTGTCAAGCTCACGGACTTTGGATTCTGTGCTCAGATCACTCCCGAACAGAGTAAGAGGAGCACCATGGTGGGAACGCCATATTGGATGGCTCCGGAAGTCGTGACGCGCAAAGCCTATGGACCCAAAGTCGACATCTGGTCCTTGGGCATCATGGCTATCGAGATGGTGGAGGGAGAGCCGCCGTACCTCAACGAGAATCCACTGAGGGCGCTCTACCTGATTGCCACCAATGGGACTCCAGAGTTGCAGAGTCCTGAAAAGTTGTCGCCAATCTTCCGGGACTTCCTGAGTCGCTGTCTGGAGATGGATGTGGAGAAGAGGGGTGGTAGCAAAGAGCTTTTGCAGCATCCCTTCCTGAAGTTGGCCAAGCCTCTCTCGAGTCTCACTCCTCTGATTTTGGCGGCCAAGGACGCTATGAAGAACAACCGCTAGCTGTGCCCAAGAGCGCAGCGGACTGCTGAACACTCTCGAAATCTGTGCcaggtgtttttgtttttttcgttaatttttttttttttttttttttttacaagtgtGTCAACAACATATCAGTGTTGCCAAAACAAAAACTCTGAGCATTTCATTTGGGTCTTTGCCTGTTTTTAAACCTGTATTGACCCCTGTGGTGTTGGGGGACATTAGATGTTCTCCTCGTCCTCCTGCTCTCGTTAGATTCTTGTGGGACTTTGTCTGTGTTTTACGTATGAACTCTTCTACTCTTTGGCTTCTCTAGACCTCGTGTGTTCCATAATTGGTCACCAGAATCAATTATGGTGATTTCAAATCCAGCTGGAGatcttttgttagtttttttttctgtagccaGAATCACGACTGAAAACTGTGTAGCCTACTCCTGTTCTTGACCCGAAGGGAAGAGCACCTTACCGATACACGCCAACTGCGAGCAGTGAATGATTTTTGTAGTCACTTGTGCCTTTGTTGTTATTCCAGCAAACACCTTTATACTCTGTCTGAAGGGGCAGGTTCTTGCCATTGAACTTCCTCTAACCTGAGACAAAACTTTCATGTTATGAAATGTGTATATGACGTACTTCGAAGAAGAGTAGCATTTCAGTTGATGTAGTTAACCAAAAGCAGGATGCGTAGATTAGATAggtgtatgtttgtgtacatgaacacttttcttgttgttttagTAACTAACAGTTTATTACGAAGTAAATGCAGTTGTCAAGAAGTCACAATGTAAGAATTGATAactatttttatgcttttcagCCACTTGTTTTGCAAGTAAAAGCCGGATTCCTGCAAACTTCTGTGAACAATACAGTCATATTGAAACATTGTGTACATCTCTTGTTCTTCATTAAAAGAGGACTTGAAACTTGA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0006950 response to stress biological_process
GO:0000910 cytokinesis biological_process
GO:0006468 protein phosphorylation biological_process
GO:0001568 blood vessel development biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0007409 axonogenesis biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247726.1 lncRNA downstream 58 2129531 ~ 2132683 (-) True LOC122327838
TU219862 lncRNA downstream 561 2129842 ~ 2132180 (-) True G148679
XR_006247744.1 lncRNA downstream 16601 2114320 ~ 2116140 (-) False LOC122328032
XR_006247745.1 lncRNA downstream 16798 2114320 ~ 2115943 (-) True LOC122328032
TU219872 lncRNA downstream 33804 2098217 ~ 2098937 (-) True G148687
TU219901 lncRNA upstream 13893 2156256 ~ 2156817 (-) True G148707
TU219932 lncRNA upstream 102268 2244631 ~ 2245805 (-) False gpr35.2
XR_006247777.1 lncRNA upstream 376074 2518437 ~ 2524302 (-) True LOC122328197
XR_006247728.1 lncRNA upstream 384731 2527094 ~ 2563223 (-) True LOC122327855
TU219961 lncRNA upstream 385071 2527434 ~ 2562557 (-) False LOC122327855
XM_043222262.1 mRNA downstream 3776 2124590 ~ 2128965 (-) True aqp12
XM_043223714.1 mRNA downstream 8772 2120589 ~ 2123969 (-) True LOC122327992
XM_043223812.1 mRNA downstream 18498 2112781 ~ 2114243 (-) True LOC122328100
XM_043223833.1 mRNA downstream 169514 1959836 ~ 1963227 (-) True LOC122328124
XM_043223608.1 mRNA downstream 204035 1915392 ~ 1928706 (-) True ampd2a
XM_043223937.1 mRNA upstream 675 2143038 ~ 2146476 (-) False pigx
XM_043223938.1 mRNA upstream 678 2143041 ~ 2146500 (-) True pigx
XM_043223542.1 mRNA upstream 6315 2148678 ~ 2155381 (-) False ing5a
XM_043223541.1 mRNA upstream 6315 2148678 ~ 2155381 (-) True ing5a
XM_043223356.1 mRNA upstream 64120 2206483 ~ 2217633 (-) True lmnb2
unassigned_transcript_2541 other downstream 1458 2131213 ~ 2131283 (-) True trnag-gcc_103
unassigned_transcript_2540 other downstream 1783 2130887 ~ 2130958 (-) True trnad-guc_17
unassigned_transcript_2539 other downstream 2045 2130623 ~ 2130696 (-) True trnai-aau_114
unassigned_transcript_2537 other downstream 4806 2127862 ~ 2127935 (-) True trnai-aau_113
TU219884 other downstream 16558 2114338 ~ 2116183 (-) False LOC122328032
unassigned_transcript_2542 other upstream 737201 2879564 ~ 2879635 (-) True trnad-guc_18
unassigned_transcript_2543 other upstream 737971 2880334 ~ 2880405 (-) True trnad-guc_19
XR_006247638.1 other upstream 1113646 3256009 ~ 3273051 (-) False cers5
XR_006247635.1 other upstream 1205057 3347420 ~ 3349172 (-) False si:rp71-36a1.1
TU220553 other upstream 1245897 3388260 ~ 3414711 (-) False G149102

Expression Profile