RNA id: XM_043223396.1


Basic Information

Item Value
RNA id XM_043223396.1
length 1544
RNA type mRNA
GC content 0.48
exon number 8
gene id cts12
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8801762 ~ 8805647 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGACAGCATTATGACAGCACTGAAGAACACACGGCTAAGTGAGATGAAGAAAGACAGACGACTCAGCAGTCACCCCCGTAATAAAGGCCTTGCTCTGCTCGGACTATACTTTGCGGATATAATGTCTGTAGTGGTACGTTCATTATATTCCAAACAAGATTCAAGTCAGACAAAACACGTCAGGCACCCAAACACTGCTGACTCAGTcctcatttaaatattcaacaacAAACGACAAAGATACGAAGCAACGCGTCTGATTTCCTACGACCACACGCCGGAAAGCTTCACGCTCAGCAGTGGCAGTGGTTTTGCTGAAGTTGTTGGTTAGGgttaaatgttttaagtttTGTTAATTAGTGGCTTCCTCTTGCAGGATGACATGGTGCGTGTAGCAGGTTGTAACGGTATGGACACACCTTCGGCGTGACGGTATATAACAGAGAAGACATGCTTCGGTTTCATCCTCACCGCTCTCCAAAGGCTCAGGCACGCACCTCCACAGAGCAACATGATCGatGCATATCGAGCACACTGGGTGGCGCTGTTTGCTCTCCTACTTTGGGCACCTCTGCTGGCGGCAGCAGATTCAGAAGAAGAGGCCCCTTCAGATTGGACACTGTGGAAAAGCATTCATCAAATATCCTACGATGAAGAGAGCGACGATCTTCAGAGAAAGGTGATCTGGGAGACCAACATGCAGATGATTGAGAAAAACAACCATGATTTCCACTTCGGACTGTCAACGTTTAGTATGGCAATGAACAAATATGGTGACCTTACCAAGATGGAGTATAAACGCTTGTTAGGCGCCACAATTAACAGCCCAGTAAATAGGAGAGGAAAGACTGCATCTGCTCAAACGCTCCGTTTAAATGCCAACAGACTGGGATTGACCAATGTTGACTATCGCGCACAGGGATATGTGACTGAAGTCAAAGATCAGGGATACTGTGGGTCTTGCTGGGCCTTTAGCACTACAGGAGCCATTGAAGGACAAATGTTCAAGAGGACAGGACGGTTGGTGTCCCTCAGCGAGCAGCAGCTGGTGGACTGTTCCAGGTCTTACGGGACGTACGGCTGCAGCGGAGCCTGGATGGCAAACGCCTATGATTATGTGATGCATAAAGGGCTGGAGAGCACTAACACTTACCCCTACACATCAGCCGATACTCAGCCCTGTTTCTATGACAGAAGTTCAGTTGTAGCCAGAATCAGTGACTACAGGTTCATCCCAGCCGGAGATGAACAGGCTCTGGCTGACGCCGTGGCAACCATCGGCCCGATCACCGTCGCCATTGATGCCGATCATCCAAGTTTCCTCTTCTACAGTTCAGGACTCTACAAGGAATCTCACTGCAATCCTAACAACCTCAATCATGCTGTGCTTGTTGTTGGTTATGGCTCAGAGGGGGGCAAAGATTACTGGATAATCAAAAACAGctggGGAACAGGATGGGGTGAAGGAGGCTACATGAGAATGATCCGCAATGGCAAAAACACCTGCGGGATCGCCAGCTACGCTCTTTATCCGATTGTGTGA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223511 lncRNA downstream 194336 8600350 ~ 8607426 (-) False zbtb37
TU223514 lncRNA downstream 194336 8600350 ~ 8607426 (-) False zbtb37
TU223507 lncRNA downstream 302401 8499126 ~ 8499361 (-) True G151029
TU223485 lncRNA downstream 332510 8468471 ~ 8469252 (-) True G151015
TU223490 lncRNA downstream 381022 8419634 ~ 8420740 (-) True G151016
TU223606 lncRNA upstream 1461 8807108 ~ 8808535 (-) True G151086
TU223638 lncRNA upstream 110254 8915901 ~ 8917143 (-) False G151110
TU223639 lncRNA upstream 110254 8915901 ~ 8917143 (-) True G151110
TU223641 lncRNA upstream 143141 8948788 ~ 8949027 (-) True G151111
TU223642 lncRNA upstream 143969 8949616 ~ 8950059 (-) True G151112
XM_043223470.1 mRNA downstream 1020 8786758 ~ 8800742 (-) False lama3
XM_043223469.1 mRNA downstream 1020 8786758 ~ 8800742 (-) True lama3
XM_043223473.1 mRNA downstream 3869 8786758 ~ 8797893 (-) False lama3
XM_043223474.1 mRNA downstream 3869 8786758 ~ 8797893 (-) False lama3
XM_043223801.1 mRNA downstream 15979 8773865 ~ 8785783 (-) True ttc39c
XM_043223068.1 mRNA upstream 14204 8819851 ~ 8825290 (-) True plekhb2
XM_043223183.1 mRNA upstream 44350 8849997 ~ 8856455 (-) True stx6
XM_043223442.1 mRNA upstream 86919 8892566 ~ 8996028 (-) False patj
XM_043223443.1 mRNA upstream 86919 8892566 ~ 8996028 (-) False patj
XM_043223433.1 mRNA upstream 86919 8892566 ~ 8996028 (-) True patj
XR_006247718.1 other downstream 1183364 7609856 ~ 7618398 (-) False LOC122327776
XR_006247717.1 other downstream 1183364 7609856 ~ 7618398 (-) True LOC122327776
TU222808 other downstream 1746560 7030307 ~ 7055202 (-) False LOC122327113
TU222752 other downstream 1888204 6906000 ~ 6913558 (-) True G150492
TU222746 other downstream 1932216 6867843 ~ 6869546 (-) False mfsd6a
TU223633 other upstream 78474 8884121 ~ 8886941 (-) True G151107
XR_006247692.1 other upstream 207901 9013548 ~ 9171931 (-) False nfia
XR_006247693.1 other upstream 207901 9013548 ~ 9171929 (-) False nfia
XR_006247696.1 other upstream 207903 9013550 ~ 9171923 (-) False nfia
XR_006247694.1 other upstream 207903 9013550 ~ 9141867 (-) False nfia

Expression Profile