RNA id: XM_043223412.1


Basic Information

Item Value
RNA id XM_043223412.1
length 1835
RNA type mRNA
GC content 0.39
exon number 3
gene id si:ch211-212d10.2
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10044222 ~ 10047874 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGAAACAGCGAGGACGCCATTGTGAAATagctgtttttcttcatttttgtttgttgctgtAATCACAGAGAGCTTTATTCCTTGATTCTGAGTTATGTTTATTGTAATAAACCGGTCATTGTCGGCTTGTTTTAATTTCCTTCCCCATCCTCAATATTTGAAGCACTAGCAGAACCCCTCAAGCGCCTTATTTTTTATAATCGGCCTGCGTGATCTCAAACACACCTTTTCCGAGTTACGTTGCTTGGTTTAAACGTTTAAACATGTTCAAACATTTGAAATCGAACGTGATTATCGATATTTGCGTCGAAACGTCTGCACATTTTCATAGGGTCGTCTTCCCAGTCTTCTTTGGGGACCCCCCCCTTCGGCGACAAAGTGCAGTACAGCCTCCAGGAAGCGACAGGGAGAGCGGCGACCGTCGGCGAGGCGAAATCTATCGCGTTTAGTTAAAAGAAGATAATACAGCGCGTTAATGCCCCGCTTAAACGCACCTCTATGACTTCTCCCGAAGATGAGAGTGTTTCCTGGAGGCTAATAGGCCCCGTGTCGGAGCTGTCCAAGAAACAATGCCGACTGATGTATTCGTCTGACGGACGCGACGCGGATGTTTGCCTGTTTCACGTGAACGGCGAATTCTTCGCGATGGACGCGCGCTGCGCTCATTCGGGAGGTCCGCTGTGTGATGGAGATATTGAGGAGGCCGATGGTGTTCTTCAGGTTTTCTGTCCTTGGCATGACTATGACTTCAATCTCAAAACAGGGAAATCAAGCACAGGTTTACAGcaacaAGTTCATGAAGTGAAATTGGAAGACGGCAATATATACGTCAAGCACACGAGTGAGCTCTCGTTACAACCTTTCGGCCAGGTCAAGGAGAACTGAAGTTTTCGGTCACGGCAGTGTTTTGTTCCCTCGAACTGAAGCATCTGCTTGGATCTCGCAATATTTGAAAACGATGCAGAATTTGAGTTGAATAAACTTTCCTGTTCCCAATGGAGCAGTTGTTAACATTTGTGacaatttgtatatatacactacgAATCAGAGATAAATCGGTCTTTAATGTTGTACGCAAATGACTTCCAGTGACACTAAAGTGAACGTTGTTTTCTGCcatttagattatttattttatgatttatttaaattgttatgAATACCTTAAAATGTACGTTGGCAAAGTTTATATGCAAGATTGATCGAACTCAGGGAAAATGGGGTCACAGACTGTTTATTCAGTCAGCTGTACATTTCAGCAGCTTAATTAGTCATAGTTTAAGATTCATAATCGTTAGCACTCTAGAGATGTTAATGTGTTTCTCTCTAGGGCCGTAATAAATGTTTACGGTTGTAACTTTCCGTAATTATACCTTCTGAGATCCAGCCCTCTTGAGCGTCAGGTAGAAATGACTTTTTACCGCAGGGAAAAAATTAAAGGACTTAATTACTTGGTCGACTCACTTAATTTTGTGATTCCATGAGGTCTTCgtgaaaaaaataagtaaataaattcattcttATTTGAATCTTTCCATTTAATCACCATCAGTATTTGATTATCCTAcctttataaaatataagttaaTGGACAAAAGGTGGCTAAAGCTATGCGATGCTTAAACATTGGCTTTGAATACGTGGGCAGAAGTTAActcataaaaaatgcaaaatatttataatatattttatttatttttacaattttattaacagttgttttaaatggttAACAATTGTGATAAAGCCTGTGTTGTGTGCCTGCTTAtgatttctgtttatatttttgtgtaatttttttttttttttaagtttaatggAATAAAGCAATGTC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224111 lncRNA downstream 15783 10023218 ~ 10028439 (-) True G151444
TU224082 lncRNA downstream 61075 9963097 ~ 9983147 (-) False G151425
XR_006247729.1 lncRNA downstream 178334 9819693 ~ 9865888 (-) True LOC122327858
TU223934 lncRNA downstream 423057 9616790 ~ 9621165 (-) True G151319
TU223896 lncRNA downstream 579709 9426153 ~ 9464513 (-) True G151289
TU224106 lncRNA upstream 6044 10053918 ~ 10072892 (-) True G151439
TU224138 lncRNA upstream 141956 10189830 ~ 10194857 (-) True G151468
TU224127 lncRNA upstream 197044 10244918 ~ 10249842 (-) True G151457
TU224186 lncRNA upstream 327299 10375173 ~ 10375615 (-) True G151507
TU224187 lncRNA upstream 327767 10375641 ~ 10375960 (-) True G151508
XM_043223898.1 mRNA downstream 49215 9994192 ~ 9995007 (-) True tssk6
XM_043223911.1 mRNA downstream 125306 9913423 ~ 9918916 (-) True tmem161a
XM_043223149.1 mRNA downstream 149255 9890550 ~ 9894967 (-) True tmem221
XM_043223152.1 mRNA downstream 156363 9886173 ~ 9887859 (-) False rfxank
XM_043223151.1 mRNA downstream 156363 9886173 ~ 9887859 (-) True rfxank
XM_043222483.1 mRNA upstream 27158 10075032 ~ 10080096 (-) False cirbpb
XM_043222485.1 mRNA upstream 28089 10075963 ~ 10080097 (-) False cirbpb
XM_043222484.1 mRNA upstream 29037 10076911 ~ 10080096 (-) True cirbpb
XM_043222482.1 mRNA upstream 29037 10076911 ~ 10080095 (-) False cirbpb
XM_043222481.1 mRNA upstream 29037 10076911 ~ 10080094 (-) False cirbpb
TU224081 other downstream 80596 9957811 ~ 9963626 (-) True G151425
TU223881 other downstream 541216 9498680 ~ 9503006 (-) False gpx4a
TU223882 other downstream 542540 9498680 ~ 9501682 (-) True gpx4a
XR_006247698.1 other downstream 902363 9013553 ~ 9141859 (-) False nfia
XR_006247701.1 other upstream 238704 10286578 ~ 10321663 (-) False polrmt
TU224207 other upstream 371253 10419127 ~ 10422335 (-) True micos13
XR_006247709.1 other upstream 1126269 11174143 ~ 11188678 (-) False rex1bd
XR_006247708.1 other upstream 1131830 11179704 ~ 11188678 (-) False rex1bd
unassigned_transcript_2544 other upstream 1300506 11348380 ~ 11348451 (-) True trnaq-uug_21

Expression Profile