RNA id: XM_043223433.1


Basic Information

Item Value
RNA id XM_043223433.1
length 8257
RNA type mRNA
GC content 0.52
exon number 50
gene id patj
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8892566 ~ 8996028 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGATCAGCGGCTGTGTTGTTGACTGCAAGCGCAACAAACTCCTCCAGCGCGACGCCATGTTGAACTGTCACGTGACTGCCAGAGCTCTTAAAGAAACAGTGCACTGGATTCGCCGCGCACATAGCATGTGAGGCTCGCGCAGGTGTAAACAGACGAAACCGGACTCAATCTCAGCCCAAAACAACTCTTGAAATGCTggattgtgttttatgagggaTTCCAAGTTTTGATTTACTCTCAAGACCAAGTGTATGGACATAAATATTGTGGGTCAATCTGCACTGATTTTTCAAGATAGCAACAATGTATGAGAACGTACCGACAGtgtCTGCTTCTGAGCGGCAGCAGGTGCTCCAGGCCTTGGAAAGACTTCAGTCCAAGCTCGTGCAGAGAGAAGAGTGGACCCACAGCGACAGGCTCGGCACGCTGAAGGAAGCCCTGCAGAGCCCTCTGTTCGGCCACATCCTCACCCTGCAGCACTCGGTCAAACAGCTTAAAGACCAGTTAAACAGCTTGCCTCCGGACACATGCACCGAGTTCAGTTTCTCCAGGAAGGGTCAGCTGATCGTCAGTGCGAGTCGTCCGTCCAGCAGCCTGGGGTCCGTGGTGTCCAACGGGACAGCTTCAACTAACGCATCCTCTGAGCAGCTCCAGAGATGGATACATGCAGCGGCAAAGgGAAGAAAGACCGAGCTAATCAGCCTCCAGAAGCCGTTGTCTGGAGGTCTGGGTTTCAGTGTGGTCGGCCTGAGACCAGAGGGGGTCGGCAGTCACGGTGTGTTCGTCAGACAGGTTCAACAGGGGAGCGTCGCAGACAGGGATGGAAGATTGCAGGAAAACGATCAGATTCTGGCGATAAACGGGATTCCTCTGGATCAGAGCGTGACGCAGCAGCAGGCCATCGCTCTCCTCCAGCAGCAGAGAGACCGAGTGGAGCTGGTGGTGGCCAGAGACACTGCGGCCAGACCCAGACTCTCCACATCTGGACCCATTCAGACGGATCAGTGGGGACACGTAGAGGAGATAGAGCTGGTGAACGATGGATCTGGCCTGGGATTCGGGATTGTCGGAGGCAAGGCAACGGGAATGGTGGTCAGGACCGTGGTGCCAGGCAGCGTGGCTGATAAGGACGGGAGACTGAGAACGGGTGACCACATCCTGCGCATCGGTGAGACGTCCACTCGAGGTCTGGCCAGTGAGCAGGTGGTGCAGGTGCTGCAGGCCTGCGGTACTCATGTGAGGATGCTGATCGCACGAGACCCTCTGGGGGCACCCCAACCTCCGCCTCCACCTCCACCTGCCCCCGCCACGGCCCCCGTGACCTCTCTGCCACCTCCACCTCCTGTGCCGTCCCGCAGGGGCAGCAAAACGCCAAATTTGGAGGGCTACGAAATCCACGAAGTTGCTTTAAAAAAGAAGGAAGGCCAGAGTCTCGGGATCTCCATAATCGGACACAACGCTTTGACCACAAAGGATGCGGTGGGGGTCTTCGTGAAGAACGTGGTTCCAGGCAGCGCCGCTGAGCAGAGCGGGAAAATCCTTGTCCACGACAGGATAATAGCATTGGATGGCGTGAACCTCCAGGGATTCACCAACCAGGAAGTCCTGGAGGTAATGAAGCGGACGGGTGATATCGTACACCTTACCCTCATTAGGAAGATCAACTCACCCAAGAGGACGGCTGTAGAGAAATCACTAGATAAAGTCCAGAGAGAGTCGTCGCGTGTGTCTCTGAAGAGATCGTCTGAGATCAAGGCGCGGGCGGATGTTCAGAGGGGCTCTGTAGTGGAGTCTATGGACCCTGCTCTGAGTGGGATCAAACAACAGCTGCAGGGGAAAAtgCAAGAGCCGGCCCCGCTGACGGAGATGGAGCTTCGCGCTAAATGGGAGCAGGCTCTTGGTCCACATTACGATGTTATGgttGTACAGCTTGACCCTGTTATAGATGATGACATTGAGCTGCAGAAGTATTCTAAGCTTCTCCCAATACACACAATGCGCTTAGGCGTAGAGCTAGACTCTTTTGATGGACATCACTACATTTCTACAGTGGCTCCTGAGGGACCAGTGGCAAAACATGGGCTGCTTCGACCAGAGGATGAACTTCTGGAGGTTAATGACGTGCAATTGTATGGAAAATCCAGACGAGAGGCTGTTGCATTCCTCCGAGAGGTTCCTCCTCCCTTTACTTTGGTTTGCTGTAGACGTCTTGCTGAAGAGGATAGTGAATATCAGCCTGAATCTGAAGAGTGGCACTCATCCAGCCCCTCAGCCAGCCTGCAGGAGCAGattgAGAATAACCTCTCCATGTTTGCCAAAGATACAAGTCTACGTGACAGCATGAGGGAAAAGTTTCAGGCCCGTCAGGCAACAGCAGTGGAGCAGGAGGCTAACGATGAAGAAGAGGCCCTAGAGTCAAGCAGCCCTAAGAAAGagcagatggaggaggagaaggatgatgaagatgaagaagaggaggaggatgaagggGAATTGGCTCTCTGGTCACCAAATGTGCAGGTGGTAGAACTAGAGAAAGGAGAACGAGGTCTTGGCTTCAGCATACTAGACTACCAGGGAAACGGTATTGGCAGGAGAAAAGCATGCCTTTGCTTTCGCAACTTCATCAGGACTGTAATAAATGGCCGCCGCATCGTGGCGAAACGGAGCGGAGATCATGTTTTAATGGACCCTCTGGATGTTGCGCGTTCAGTGATCGTCATCCGGTCTGTGGTGCCTGGAGGGGTGGCGGACAATCACGGCGGGCTCCTCCCAGGTGACCAGCTGGTTTTCGTCAATGACACTCAACTAGACACATGCTCTCTGGCCCAGGCCGTAGAGGTTCTCAAATCTGCCCCCCTTGGGAGAGTCTACCTTGGAATCAGGAAACCGCTGGTGCCAGAGGACAGAGGTATTGGGCAGCAGTCCTCTTGGCCTGTAGAGGGTGCCGATGAGCAACCAGCAGCAAAGTTGGATGTCACTCTACCACCTATGCAAGAGGACTTTGGAAACGGCTCTGTGTTATCTGATGATCTGGATGAGGAGCCGGAGCTTATCTTGGATGCTGAGCCACGCTACGCCTCTCCTCTCACCACCATTGAACTCCTGCCTGGCCTGGAGCGAGAGATGGCTgtagatgaagatgatgaagagcAGGAGATGGAGGATCAAGAGAGCCCCAAGGTCGACAGTCTGCCTTCATACTTCAGTGAGAAGTCTCGCCCCTGGGAAGAACCAACACCGTCTTTCAGTTCCAACAGCCCCTATCAGTTCAACACTCAACCTGATACACAAGAACagTTCACAGAAGAGGACATTGAGCTTTGCACAAGCTTCGAGAAGATTCACTTGCAGCTCCCGCAAATTCCCCTCAGTCAGTCGGCCACGTGGATAGAGGCGGCAGACAGCGAGGCAGACTCTGACTCCAGAAACGAAGGCTCAGAACTTACTTTGACTGACACAGACACTGAGTCTGCACAGCGCACTTCCTCTCGCAGCAGGAAGAGAAGAAACCAGGGGGCAGCCGGTTCAGGCAGGGAAGGCAACAGTGATCTGCCTGAAAGAGAGGAGGGAGAAGGTGAGGAGACGCCCGCGTTCAGCCACTGGGGTCCGCCTCGCAGGGTGGAGGTGTTGCCACAGCCGGAGGAGTCTCTGGGTATCAGCATAGTGGGCGGCCGCACGGTTATAAAGAGGCTGAAGAACGGCGAGGAACTAAAGGGCATTTTCATCAAACAGGTGCTGCCAGACAGCCCAGCTGGACGCACGGGTGCCCTTAAAACAGGAGACAAGATCTTACAGGTTTGTGGAGTGGATTTGCAGAACGCCAGCCATGAGGAGGCAGTGCAGGCTATCAAAGCAGCTTCCAGTCCCGTGGTCTTCATCGTGCAGAGCCTGTCCTCCACTCCACGGCCTGTTTCAGTGATGGCCTCCAGCATTAGACAGCACAAGGCTAAGAGGAAAGTCGCCCAGCAGAAAGCAGGACAGACCACCAGCCCTCCACCCATGCGCCTACCCCCACCTTACAGACCCCCCAGCCTAGTGCAGGAGGAGGAGCAACaggaggaagagagggaggaTGAGGAGCAAGCTAAAGAGGTGATCAGGCAGAGGTACGCGGACCTGCCGGGAGAGCTGCTGATCGTGGAGCTGGAGAAGGACCGGAACGGCCTGGGACTCAGTCTGGCGGGGAACAGGGATCGCTCCTGCATGAGCATCTTCGTGGTGGGGATCACCGCCGGAGGACCGGCCAGCAGAGACACACGTATCCGAGTGGGAGACGAGCTGTTAGAGATAAACAACCAGGTGTTGTACGGCAGGAGCCATCAAAACGCCTCGGCCATAATAAAAAGCGCAGCATCAAAGGTCAAACTCGTCCTAGTCAGGAATGAAGATGCTATCAATCAAATGGCTGTCGCTCCTTTTCCTTCCCAGCCTTCCTCATTCTTCTCCAGTGAGACACATCAAAATACGCCAGCAGCTCCAGCTCCAGCAGAGAAGCCACAGTTACCCGAGAGCAGAAACTCACCCGAGACGCCCATAATCAAGGATCAGCCCAGCGTGGTGCAGACGGATCAGACGCAGAAGACTTTCAGAGAAGGAGAGTCGGCCTTAAAGAAGCTGAAATCCTCAGAGAAGATATTGGAGCCCCCGAGCGAACAGTCGCCCAAGCCTCTCGCGGAGCAGATCAGCGGTCTTCCAAAAATCCAGAGGAGCTCCACCAGGCCCTCAGCCGGTTCTCTGGAGGTCACGTCCCCGGGGTCGTCCCTGCCGGTCCCCGGCACCAGCCCTGACTTCGAGTACTGCAGCAAAGGTGCAGCGGTCGCAGaccCTGCTACGTGTCCCATAGTTCCAGGACAAGAGACTGTTATTGAGATTTCTAAAGGCCGCTCTGGACTGGGTCTCAGTATAGTCGGCTGCAAAGATACACAGCTGGATGCCATAGTGATTCATGAAGTGTACGAGGAGGGGGCGGCGGCGCGGGACGGCCGTCTCTGGGCCGGGGATCAGATTCTGGAGGTGAATGGAGTAGATCTGCGCAGCGTGGCTCATGAAGATGCAATAGCTGCTCTCCGGCAGACACCGGCCAAAGTTCGGCTGACGGTCCTGCGCGACGAGGCACAATACAGGGACGAGGAGAACCTTGACGTGTTTCGTGTTGAGCTTCAGAAGAGAACCGGACGCGGACTGGGCCTGAGCATCGTCGGGAAGAGGAACGGTAAGGGTGTATTTATCTCGGATGTGGTGAAGGGTGGAGCAGCTGATCTGGACGGCAGACTGATGCAGGGGGATCAGATCCTGTCTGTGGATGGAGAGGACATGAGACAGGCCTCACAGGAGACCGTTGCCGCCATTCTCAAGTGCGCCAGGGGCAAGGTGCTGCTGGAGCTGGGCCGACTGAAGGCTGCCTCCTGGATCTCCTCCAGACGCACCTCCCAGGGAAGTCAGATGAGCCACGTGAGCGCCAACAGCAGCACCCCAACCCCCACGCCCCCTGCCGTGGTTCCGCCCCCCTCTCAAACCCTCAGCAACAACAGCAGAAACATCACCGAGCCCAACAGCAAAAGCACAGCGACGGAGCCAGGTGTCCGGACAGTGGAGATCACACGGGGTCCCACCGATGCTTTGGGTGTCAGTATAGCGGGCGGTAAGGGCAGTCCTCTGGGCGACATCCCCATCTTCATCGCTATGATCCAGGCCAACGGTGTGGCTGCCAGGACACATCGCCTCAAAGTAGGTGATAGGATTGTCAGCATCAACTCTCAGTCTCTGGATGGCTTGACTCATGGGGACGTCGTAAATATGCTGAAGAATGCTTACGGCACCATCCTACTCCAGGTGGTTGCCGACACCAACATCAGTGCCATAGCCAGTCAGGTGGAGAGTCTGTCCACTAGCTCCACCCCCAGCACCAATCCAGAGGTCCGGCCAGTGGAACCAGAGACGCCCAAGCCGAAGACCATCACTCTGGAGAAGGGCTCAGAGGGGCTGGGCTTCAGCATCGTGGGCGGCTTCGGGAGTCCACATGGAGATCTCCCCATCTATGTCAAAACCGTCTTCAGCAAGGGGGCGGCGGCGGTGGACGGCCGTCTGAAACGCGGCGATCAGCTGCTGTCGGTCAACGGAGAGAGTCTGGAGGGCGTCACACACGAGCAGGCCGTGGCCATACTGAAGAAGCAGAGGGGAAGCGTCACGCTGTCCGTCCTCTCCTAACTAAAGActtcatccacacacacattccaTACGCGCGTCTTAAGAGACTCTTTGCATCGGCCGTTTTTCGGCCGCCTTGCTTCCTGATTTGCACTCGAACGTTTCAACTCCGCCCTGTCGCTGTATCGAAATCGATGAGAAATGCTCGGAAAGGGAACTTTATCGTATCGTCTTTGTTTTAGTCACGGACACGTAGCCTCTCCAGCGGATGAATTACGGGGCAATGTTAGAGAAGgttattttgatgaaatgaGTGCTGGTAACTCAAGACCAGGAGGAAAACTTAAAGTAGCAGACGCATTAACATCCTTTCAGTCCACATACACATCTAACACAACCTACGGACGAAGAGAGCAGATGAACTGTGTGTAGATGAATAATAATAAGGGATGACAGATGTGCCTTGGAACGGGCAGATCAGACTGTACTGGGATGTTTTGTATAGCTAGTGTTAGATTTATTAGGATCATTTCAATCAGGTTCTTTACGTTGCAGGGTAGCTTCGTGAATTTTTCGAGAAATAGTTCgccagaaaagaaaaaaaacacttctctTTCTTAccctttcttctgtggagctaAAAACGAGATGTTTTGTAGAATGTTCGCGCTGCTCTGTTCCATACAGTTAAGGTGGACGGGGACCGGAGTTTTTTGCGATTTAGAAATGGcgaaaatgtgcataaaaatatcGCAAAAGCTGCTTTGCGTTTTAAAATAGCGGggcatattaaaaatgtaagttgaTGTTCgcgaaaaaaagtgaaatttcgGGCAATTTTTCACACTAAGGTATTAATGTttgcaatttttcatttaaaatgaccgCTGCTCTTTTCCTTAAAAATGGATGGAGACTGATTTTAGAAATTCATAAATGACATTATTACACTACATGGATGGCGAGTCGTGTGACAGATTTCACATCTTGTTGAGATTTGTACGATACTTCTGCGTGaggaatatttttttagttagtttttttttgttactttaaacTTCAGGCAATTCATGCACAACTATTATTTTGCGAGTACGCTTTCGCTTCAAATTCATCTCAGAAATCCAAACGTTATTTGCACAGAGCTGTCGTTTTGCTTGAAGTCTTAAAAATAGCACGCGCCGTTGTTTTCGCCCAGTCCCCATTCACTTTTAATTGTATGGGAATATCTCCTTTTAGGCTCCACAGTAGAAACGAAGCCATGCGAGTGTGCAACAAcacaaatgatgacaatttCAATTCTTGGAAGAACTGTGGCGCTCTATCAGTTTATTATAGTGTGTTGAGgttcacagaaatgttttgtttttttgtttttttaaacatttttgtaattccaTTTGTAATTCGATTGCACACGTCTATCATTTcagtgtaaatatgtaatttatttcctgtttttagGGCTTTTATGCATTGCTTTTGTCTTTATGAAGATGTCCCACACATGCCAGTTTGACACCGCGTGTGTCTGCGTGTCACAATATGAGGATATCCTGTGTCAGTCTCTCTCCTAGAGGAAGTGTAGCAGGCTCTTCAGAGACTATCAGGGCTCTCCAGGTTTTAGACCTCGTCCAGACCGTCTCTTCCACTAGGATTTCGTAAGCACACCATCATACAATGCCTCTTGAATTTTCGTGCCATGTGGACAGTATGTTCTGAACTGTTCAGCGCTACGTCCCTTTAAAAAGATTGCCTGTATCTCCTATGCCTGTCTTCCCCTTTTTCCTTAAAGAAATGCAACGCCTCAGTCTGCTCCCTTCTGCTAGTTCTTTCCTTTTGGGCTGTGAACTACAAAAAACGGCTTCCACTCAGATGACTCGAGTAGTTAGACCTTTATATCTGCCATTTTTCTGtcggtgtaatgtttttaaagtccAAAGAAACCATTTAGCTCCATTCATACATTAGATACAGGTCTTAGCCTGAAATAAAGCTGATTTATTAAcatttgcaaaacaaacaagCGGTCGTTATGTCTGTGACTTTATTTTGGACGAGTAGAATTTATCTGAAGTGCcagaaaataaagttattttcattttaa

Function

GO: NA

KEGG:

id description
K06092 INADL, PATJ; InaD-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223606 lncRNA downstream 84031 8807108 ~ 8808535 (-) True G151086
TU223511 lncRNA downstream 285140 8600350 ~ 8607426 (-) False zbtb37
TU223514 lncRNA downstream 285140 8600350 ~ 8607426 (-) False zbtb37
TU223507 lncRNA downstream 393205 8499126 ~ 8499361 (-) True G151029
TU223485 lncRNA downstream 423314 8468471 ~ 8469252 (-) True G151015
TU223653 lncRNA upstream 149277 9145305 ~ 9147301 (-) True G151122
TU223864 lncRNA upstream 364503 9360531 ~ 9454347 (-) True G151266
TU223879 lncRNA upstream 391117 9387145 ~ 9398096 (-) True G151280
TU223896 lncRNA upstream 430125 9426153 ~ 9464513 (-) True G151289
TU223934 lncRNA upstream 620762 9616790 ~ 9621165 (-) True G151319
XM_043223183.1 mRNA downstream 36111 8849997 ~ 8856455 (-) True stx6
XM_043223068.1 mRNA downstream 67276 8819851 ~ 8825290 (-) True plekhb2
XM_043223396.1 mRNA downstream 86919 8801762 ~ 8805647 (-) True cts12
XM_043223473.1 mRNA downstream 94673 8786758 ~ 8797893 (-) False lama3
XM_043223036.1 mRNA upstream 26841 9022869 ~ 9171927 (-) True nfia
XM_043222294.1 mRNA upstream 261103 9257131 ~ 9259978 (-) False nphs2
XM_043222293.1 mRNA upstream 261103 9257131 ~ 9259978 (-) True nphs2
XM_043223052.1 mRNA upstream 365245 9361273 ~ 9365286 (-) True LOC122327620
XM_043223051.1 mRNA upstream 365245 9361273 ~ 9365273 (-) False LOC122327620
TU223633 other downstream 5625 8884121 ~ 8886941 (-) True G151107
XR_006247718.1 other downstream 1274168 7609856 ~ 7618398 (-) False LOC122327776
XR_006247717.1 other downstream 1274168 7609856 ~ 7618398 (-) True LOC122327776
TU222808 other downstream 1837364 7030307 ~ 7055202 (-) False LOC122327113
TU222752 other downstream 1979008 6906000 ~ 6913558 (-) True G150492
XR_006247692.1 other upstream 17520 9013548 ~ 9171931 (-) False nfia
XR_006247693.1 other upstream 17520 9013548 ~ 9171929 (-) False nfia
XR_006247696.1 other upstream 17522 9013550 ~ 9171923 (-) False nfia
XR_006247694.1 other upstream 17522 9013550 ~ 9141867 (-) False nfia
XR_006247695.1 other upstream 17522 9013550 ~ 9141866 (-) False nfia