RNA id: XM_043223451.1



Basic Information


Item Value
RNA id XM_043223451.1
length 812
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC122327820
representative True

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10407145 ~ 10408483 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GCTCACTGATTGTCTTCATGATGACCATCATCTCTCTGCTCCTGCTGGCCTCTCTGCTTCCACACCTGACCTTCACCGctCGTGTGAAGGTGGGGATAGTGAACGGCACAGAAGCAAAACCCCACTCCAGACCTTACATGGTTTCTCTTCAGAAGGACAAGACGCATATCTGTGGTGGATTCCTCATCTCTGATGAGTTTGTCTTGACGGCTGCGCACTGCTGGAACGgAAATGAGATTCTGACAGTTGTGGTTGGCGCTCATGACTTGAAGAAAAGTGCGAGTTCTGATCACATCGCAGTGAAGAACTACATCCCACACGAGAACTCTGATCAGAATGACATTATGCTTTTAGAGCTACAGGAAAAACTCAACCTGAACAACTACGTTAAATCGATACCATTAACAAAGGATGGAGAAGACGTAGAGGCAGATACTATCTGTAGCGTTGCCGGCTGGGGACAGCAGAATAACGGCCAAAAAAGCAATCGTCTAATGGAGGCAGGCGTGTACATATTGGATAACacagaatgtgaaaaaaaatggagaCCGGTCTACTCAGTCTCAAAGATGCTGTGCACACGCGGCCATGGTGGATCCTGCCTTTACGACTCAGGAGGTCCTTTGGTTTGTGGAGACACTGCAGTTGGCATCACAGCTTTTGGATACAGAGAGAAGTGCAATTCACCTCTATATCCTAATGTCTATACGAAGATTTCACCCCATCTTCAATGGATCAATAGCAATATAAAGCAAGTTAAGTTCTTGAAATCTTCTGTGTAAGCTCTTTCAATAAATGTATCATCTGGAAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU224164 lncRNA upstream 58259 10347829 ~ 10348886 (+) True G151487
TU224024 lncRNA upstream 217973 10188578 ~ 10189172 (+) True G151382
TU224015 lncRNA upstream 219562 10185635 ~ 10187583 (+) True G151373
TU223986 lncRNA upstream 244699 10151480 ~ 10162446 (+) True G151345
TU224002 lncRNA upstream 268943 10137445 ~ 10138202 (+) False LOC122327864
TU224294 lncRNA downstream 257573 10666056 ~ 10669212 (+) True G151592
TU224310 lncRNA downstream 293139 10701622 ~ 10702328 (+) False LOC122327757
XR_006247710.1 lncRNA downstream 293390 10701873 ~ 10709748 (+) True LOC122327757
TU224309 lncRNA downstream 298916 10707399 ~ 10709755 (+) False LOC122327757
TU224316 lncRNA downstream 302030 10710513 ~ 10711972 (+) True G151603
XM_043223452.1 mRNA upstream 5418 10400426 ~ 10401727 (+) True LOC122327821
XM_043222364.1 mRNA upstream 7597 10398269 ~ 10399548 (+) True LOC122327181
XM_043223899.1 mRNA upstream 14274 10385363 ~ 10392871 (+) True LOC122328190
XM_043223529.1 mRNA upstream 24366 10381507 ~ 10382779 (+) True LOC122327872
XM_043223918.1 mRNA upstream 28455 10376708 ~ 10378690 (+) True LOC122328210
XM_043223901.1 mRNA downstream 1774 10410257 ~ 10412454 (+) True LOC122328194
XM_043223903.1 mRNA downstream 4866 10413349 ~ 10418216 (+) True LOC122328195
XM_043222316.1 mRNA downstream 14405 10422888 ~ 10426307 (+) True hsd11b1la
XM_043223909.1 mRNA downstream 48722 10457205 ~ 10463197 (+) True rgmd
XM_043223318.1 mRNA downstream 307757 10716240 ~ 10720317 (+) True hmg20b
XR_006247720.1 other upstream 413704 9970622 ~ 9993441 (+) False gatad2ab
TU223980 other upstream 443511 9923547 ~ 9963634 (+) False LOC122328159
TU223981 other upstream 443511 9928679 ~ 9963634 (+) True LOC122328159
TU223982 other upstream 443511 9931139 ~ 9963634 (+) False LOC122328159
TU223952 other upstream 513656 9888200 ~ 9893489 (+) False borcs8
XR_006247780.1 other downstream 300561 10709044 ~ 10709110 (+) True LOC122328232
TU224353 other downstream 397569 10806052 ~ 10837365 (+) True G151620
TU224351 other downstream 407652 10816135 ~ 10837365 (+) False G151620
TU224458 other downstream 510577 10919060 ~ 10921928 (+) False si:dkey-172o19.2
XR_006247707.1 other downstream 910206 11318689 ~ 11323940 (+) False mier2

Expression Profile