RNA id: XM_043223474.1


Basic Information

Item Value
RNA id XM_043223474.1
length 5020
RNA type mRNA
GC content 0.43
exon number 32
gene id lama3
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8786758 ~ 8800742 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTGCGCTTGGATATTATGGCAATCCTTTAGTGGAAAGAGGAAGTTGTCAGCCGTGTGGCTGTGACCACGGTTATGTATGTGACCCACTAACAGGAGGTAAGCAAGCTCTCCTGatgttcataataataataataataataattcccgtttgttttctttttttctcatagaTTGTTATGAGGGTGATGACCCAGATACTGGAAACTGCCTTGGTTTGCACCtcaaaaaattcttaaaaattatgtgaaaaaacTTTAATTGCGGGGTTATATATTCCTGCATGGAACCTTGTGgccatttatatatttcagtaattatttgatattttatttataggctTTGACTAACTCCAATCTTCTTCCTGTTAGAGTGCGATACCTGCGTCATTAAGTTAATGGATGATCTTGATGCGATGGACGATGAGTTCTCCAAACTGAAGATTCGACTTGAGTCTTATATTCGAAATTCTACTTCATACACAGGACTGGAGAAACTTGAAGATGCCATTGCTGGTTTTGGTCTATAAGTACACTGAATCTGTCTTTGCATTAAAACCAAAGGTTTTGGAGCTTGAATCTGATCTTGACATTGTTATAGATGACCTCACTATTCTCAATGACAAGGCAATTCAGATGTTCTGTACTGCAGGTCAATTGTTAAAGACTCTGGACCAAACCTATCAAAGAGGAGACAACCTACGATCTGAGAGTGTGAAACTCTTACGGACGATACATGAGTTCTTGAACGAGTTGAAGCTGTCCAACCAAACAGGTGGGAACACAGAAGAGGCCACCAGGATGATAAAAGAAGCCCAATGGATGTTGGAGAAGATGCGAAGACAAAGCTGTAGGGTTCAGAGAGAACTGGCTGACGAGGAGCTCAGAAAAGCACGAACACTACTTAATCTCATCTTGAATGACCTGATGGTTCCTCTGAATGGCTCCTTGCTAGTGGCTGATCATATCAGGCAAAAACTCATGGATCAGGCAGAAGATCTTAAAGATATACAAGAGGCGATTATAGATGCACAGCTTCATGTGATCAAGGCCAATAGTGTGAATAAACTCAACGAGGAAGAGCTGAGAAATATTTTGAAGCAGTTCAAAGTATTGAGGAAGAATCAAGGAAATATTATGGCCAACATGAACATGACCAGAGAGTCACTAAAAGAGACTTCGGATCTCCAGAAAATGATAGCTGACCTAACAAAGGAAATAACTCATCTAGCAGCTTTGATTGACGGAGCAAAAAACAATCTAGAAGCAAAACTTGAGCTGCTCGCCAATGCAACCTCTAAGGCAGGAATTGTGAGACAGGCTGAGGAGCATGCGCAGGAACTTATGAAGCTGGCTATAGACTTTCAAGTATTCATACGGAGCATCACCAATTCAACCGCTGTTCAGAAAGCAATAGAAGCCATCAATGCATTTAGAGATGTCATTGATGCCATAAAGGAGGCAGAAGCTGCCGCCAAACAAGCTAAAGAAGTGGCAGACCAGGCTTTTAAGGATGTGCGAGGACAAGATCTACAAAATAAAGCCAATGATTtgaaaaacttttcaaataCTCTGCTGGTGAATGCCAAGGAAGCAGAGATACAGCTAGAAGATGTCTCGCAAAAATGTGAAGCTTACAAGAACCGGATCAAGCAGGCCAAAGACAAATACAACATGCTGAAGCAAGTCTTGCAAGATGTGCTGGAGAGGATGAACAACATCAAAAGGGagGATATTCAGGGCCTCATCAACCAGGCAAAGGAAGGTGCTGCAGATGTGAATGCCACAGCAGATGATGCAATAACCAGAATGCAAAACATCAGTGAAGAACTGAACAAAATCAACATTACCTCTCAAGATTCAAACCTGAACAACTTACTTGATGGAGTCAACAAAACATTGACAGAACTGGATCAGACTTTCCCTTCACTGATTGACAAACTAAACAAAGTGGAGAATCAAAGCATCACTAGCCCAGCCAACATCTCCAGCAGCATACAGAAAATCAAAGACTTGATCGAAGAGGCCAGAGACGCGGCCAACAGGATCAGGGGGCCGATCTTGTTTTCTGGGAACGCTCACATTGAACTTCGACCACCTAAAGACCTGGAAGACTTCCGAACGTTTACTGCTCTCAATCTTACTCTGCACCAACCAAAAGCTCGAGGCGATGGAAGACGTAGACGCCAACTGAGCGAAGAAGACAACCAGTTTGTTTTTTATCTCGGAAATAAGCATACAGTCGGGGATTTCATTGGCCTGGTTGTGAAGAATGGTGTCCTGTTTTGTGTCTACAAAGTGGGTGGCCGTTTTTATGAGATAAAGACCAGCGGAATCACTCGGTCCAACCGTGACAAAGCTTTTATGGATCGGGTGGATTTACGCAGAGTTTATCAAGATGTGCAGGTTATATACACAAAGATTTTCACTTCAACTGAACCCAATGTGCTGCCGCCCATGATTAATAAGCCCAGCGACATGAATGGATTGCTTGATCTGGATCCCAATGAGGTTGTCTTATATGTAGGTGGATACCCAAAGGATTTTAAGCCACCTGAAGAGCTCCGGTACCCAGGATACAAGGGCTGTATTGAGTTTTCCACGTTAAATGATCATATCCTTGGTTTGTACAACTTTCAGCGTGCCATCAACATCACAAAAACTGATATGTGTCAAAGGGGAAAAGTCCACATGTTGGGGGATTATTTCGATGGCACAGGATATGGAATAGTTGATGTATCACCTCAGAACTCTGTCATTAAGTTCTTTGTTAGGAGTCATCAAATGGACGCAGTGCTCTTTTTTGTGGAAAACGAGaCCTTGCACTTCTTAGTTACATTTGAAGGAGGCTATATTGTTTTGCAAGGAAAAAACAAGGACACAACAATTTTTGAAAAGTCAAAAGTAAAAGTGTTTCCTCAAACAAACTTCATCCATATCAGAATAATTCTGAGTATTGATAATCCAGTAACAGTAACTGTCACGGACAGCATCAccatttattttggaaaggTCAAAGGGCTCTTTGAGAAGGCCTACATCGGGGGTGTTCCAGCTGCAATCCGAGAAAAACATAATATTGTTCTCCCACCACTTAAAGGATGTGTCAATAACGTCAATGTAGACGTCACTGCTTCTTTTACAGAGGAAGTTGGAATCGTCCGGGGCTGTCCAAATCCTATACTGGGATCCCGAGAGGCTACTTTCAAATTTGGGAGTTCTCTCTCTTTGTCACCTCCTATTAACGATGCAGACTCGGGGTCAATGGTTTCACTCGGGTTTAAGATGTCCCAGAAGAACGTTTCCTCCTTAATGCTGACTGGTGGAATGAATAATGAGTTTTTGCTGTCTTTGAACGACGGCTATGTCGAAATGAGCGACAATAAGGAAAAATTAACATCCACCAACAAGTGTGAAACCGGAAAATGGCACTACGTTACAGCCTACAGAAGTGGAGCGGGGATGCAGCTAAACGTTGACAACACAGATATTAGAGATCCACCAACAGTATCCACATTCACTAAACTTGGGGAAAATGTGACTTTAGGGGATGGTTTATTTAAAGGCTGCATGAGGAACCTGTATATACGGAGTCTACAGACCGACTACATTCCGGCTGACTTGAGCGGATTCGATCAGACTGGAAATGTATCTCTGGGATTTTGTAAAGCAGAGCGCTCCCCTCTGGACACTACTAAGAAGCGTGCAAGACATGCTGGAACTCAATACAACAGCAATTCGGGAAGAGCTAAACAAGTCTGCGGTGACCCAAAGTCCATCAAAAACACCTACCACCTCGGTTCCAGCAGCCACATGCAGTTTAAAATAGATCCAGAGGAGCTCAATAACAGGCTGCATTTCTCCCTAGACGTCCGTACCAGATCAGCTGAAGGACTTTTACTCCATGTTTCAGATAAACGTGGTGCTCCTCTTGTGATCTTATATTTGGATAACGGAAAAGTCAAACTCTCCGTTGGGGCAGACGAAGTAATCTCCTCGCAGAAAATAAACGATGGTTACTGGCACAACATCAAGTCCGGCATGAAGCGACACAACTTTCATCTAGTGGTGGATGGCGCTGAAACACCCAACGGACATCCTCTGAAAGGATTCATGCGTGATCTGCAGTCTCCTGTCTATGTGGGGCAAGGAACGTTTCAGATGCTTCGCAAAACACGAgAAAAAGTGCCTCAGAAGAGTATAATCGGATGCGTTCGAGACATCAGGGTTTTTAAGGTGCTCCTCGTGGATCCGGCGGCTAGTCGCGGGGTTACGCCCTGCTTCAAAGGCGTCACAGAGAAGGGGGCCTATTTCGCTGGAAATGGCGCACATTTGATTTTAGAAAAGCGCCGTATCTTTGGTCCTACGTACAACCTGGCTTTTGAACTTCGACCCAGGAGCCTCACCGGCCTGGTCTTCCACAAAATCGATAAGCCTGGACTTACACTTACTCTGTTTCTCAAGAAAGGAAAGGTGGTGTTAACAGCGTATGATGGAGAGCACCGCTATGGCTCTGCACTGACCCCAACACGACCCCTCTGCCATGTGTTTCACTATGTGTCAGTGTCCATACGGAGGAAAACTATCGAGCTAAGAGTGGATGAAGTGTCTTCACGGGTGAGACTAAAGTCTGTATACCGTCCTCCATTGCATGAAACAATCTACATCGGTGGCATTTCAGAGAATCGAAGCAAAGGAGTGGAAATGCAGGCATCTTATGTGGGGTGTTTGCGAAACATGCTGCTTAATCAAAATCCTATCACGTTTGACGACGCGACAGGCATATTCGGCTCCATAAACACCAACGAGTGCCCGGCAGAATGATGGAAAGAGAAATTAAACACAGCTAAGAGGACTAATTTTGGAGTTATCAAATTGTGATTGTTTTGGGTAATTGTTTTGGGAAATGATGCTAAAATTAGACTTACAAAATGAAATCCCGTTTCCTCCATACTTGGAATCAATGTTAATGAAgccttaaatgtaaaaatgtgtatgaaaataaaaatatattttaaatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223511 lncRNA downstream 179332 8600350 ~ 8607426 (-) False zbtb37
TU223514 lncRNA downstream 179332 8600350 ~ 8607426 (-) False zbtb37
TU223507 lncRNA downstream 287397 8499126 ~ 8499361 (-) True G151029
TU223485 lncRNA downstream 317506 8468471 ~ 8469252 (-) True G151015
TU223490 lncRNA downstream 366018 8419634 ~ 8420740 (-) True G151016
TU223606 lncRNA upstream 9215 8807108 ~ 8808535 (-) True G151086
TU223638 lncRNA upstream 118008 8915901 ~ 8917143 (-) False G151110
TU223639 lncRNA upstream 118008 8915901 ~ 8917143 (-) True G151110
TU223641 lncRNA upstream 150895 8948788 ~ 8949027 (-) True G151111
TU223642 lncRNA upstream 151723 8949616 ~ 8950059 (-) True G151112
XM_043223801.1 mRNA downstream 975 8773865 ~ 8785783 (-) True ttc39c
XM_043222411.1 mRNA downstream 29740 8752930 ~ 8757018 (-) False trmt13
XM_043222410.1 mRNA downstream 29745 8752424 ~ 8757013 (-) True trmt13
XM_043223143.1 mRNA downstream 47515 8734158 ~ 8739243 (-) True rtca
XM_043223063.1 mRNA downstream 61378 8696000 ~ 8725380 (-) False cdc14ab
XM_043223396.1 mRNA upstream 3869 8801762 ~ 8805647 (-) True cts12
XM_043223068.1 mRNA upstream 21958 8819851 ~ 8825290 (-) True plekhb2
XM_043223183.1 mRNA upstream 52104 8849997 ~ 8856455 (-) True stx6
XM_043223442.1 mRNA upstream 94673 8892566 ~ 8996028 (-) False patj
XM_043223443.1 mRNA upstream 94673 8892566 ~ 8996028 (-) False patj
XR_006247718.1 other downstream 1168360 7609856 ~ 7618398 (-) False LOC122327776
XR_006247717.1 other downstream 1168360 7609856 ~ 7618398 (-) True LOC122327776
TU222808 other downstream 1731556 7030307 ~ 7055202 (-) False LOC122327113
TU222752 other downstream 1873200 6906000 ~ 6913558 (-) True G150492
TU222746 other downstream 1917212 6867843 ~ 6869546 (-) False mfsd6a
TU223633 other upstream 86228 8884121 ~ 8886941 (-) True G151107
XR_006247692.1 other upstream 215655 9013548 ~ 9171931 (-) False nfia
XR_006247693.1 other upstream 215655 9013548 ~ 9171929 (-) False nfia
XR_006247696.1 other upstream 215657 9013550 ~ 9171923 (-) False nfia
XR_006247694.1 other upstream 215657 9013550 ~ 9141867 (-) False nfia

Expression Profile