RNA id: XM_043223478.1


Basic Information

Item Value
RNA id XM_043223478.1
length 2438
RNA type mRNA
GC content 0.41
exon number 14
gene id LOC122327835
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11862795 ~ 11870285 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaaaaaaaagagataagaCTTATCTTTATGGTCTTTTGCTGTGTACAACTGACAAATGTCAGATTTggttttagtgtatttttatgtttgtttgtttttttgtctggcaTAAAAGCACGCTCTATTTGACTTTggtaaattattaacattttgatcCCCCATTggagacaaaaaacaaacaaaaacccccaaaaaagaaaaaaaaaaggaaagctcAGTGAGTTTGTGAGGCGACCTAAAAATGAGAGTTCCTGTAGAAATCATCAGCTTTTcctgttttctattttctgtTACCTCTGCGCAAGATCAAGAATGTCTTGGGGAGGACATCGTATATGAAAACGCAGAGCCAGTTGCGAACATTTCATACACTGATGGTGAAACAGTAAAAGTGTACTGCATGACAGGTTATGGTGGATTTTACAGGTTAATGTGTAAAAACGGACAATGGCTGACGCTCATTGCCCAAAGATGCTTAAAGAAAAGATGTGGTCATCCAGGCGAAACACCAAACGGTGATTTTAAACTTATAAAGGGAACAGATTATACTTATGGAGCAACAGTGCAGTATACTTGCAAGAAAGGGTACGAAATGACAAGCAGAATCAATCATCGTCACTGTAGAATCAAAGGGTGGGATAATTCTGTCCctgtctgtgaggagGTGAGATGCCCTGTGATTCACACAGACGGGGATGTGGCCGTATCGGGCAACACAGAGGAAGGAACTTTTGGCGATGTTGTTCACTTTGAGTGTGTATCTTCTTTCAAAAAGCTAGACGGAAGTAGTGTCATTCATTGTGAGGAGAATGGTGTTTGGAGTGGGCCTGTTCCACAGTGCATAGTAACTTGTCAGCTGGATCTAACCGAACCTGAAGTAGTAAAAACCATTCCATGGgggaaatcattttttaaagctgGAGAAACAGTGGAAGTTATCTGCAAAAAACAGATCTATAATAAACAGGAAACATTTACATGCACCGATACTGGAAAGTGGGATTACAAGCCTACTTGTGAGGAGCAAAAGTGTGAAGCTCCACTCAACCAGCATctgtatttactaaaatattactttagtGGAGATCTGTATTTGGGAGCGAGAAGATCTTACCGTTGCGAGTCTGGTTATCGTGAAACAGCAGAAGTGGCCACATGTACACGAGACGGATGGACACCGAAACCACTGTGTGCTGAACTTATGTGCGATCCACCAATAATCCCAAATGCACAGATCGTAGAAGGTCAGACAAATGCATACAAAGTCTCTTGgagcataaaatataaatgcaatccTGGATTTGAACCAGAGGAGCCTGTAAAAATCACCTGTGACTCCAAGGGCCAGTGGACAGACATACGGAAATGCAGTGATGGTACCTGCGAGGAGAAAGAactcaaaaatatacaaattatattccAATATCCGAACACCACTCTGCCTTATAAACCTGGACATATCTTAGTTTTTCGATGCACCGATGATAACATGAGGTTTTACGGCCAACGTGCAATCGAATGCCTGCCAGACGGGAGGTGGAATTACCCATATCCACAATGTGGAGGAACGGTTCAGTGCTCCAAACCAACAAAGAACGTGCAGTTTGTGACACTGTCAGACGAGAAAACTGAGTACAGAAACTCTGAGACTCTGACATACACTTGTAAAGAACCGTACAGTAAAATTCCTGGAGGAGTTTTAAAGTGTCAAAACGGAAATTGGAACGGAACGTTTGACTGCCAAAGTACGATCTGTCCACCTCCTCCGTATCTTCAACATGGAGATTACAACATCAACAGTACAAAAGATGATGTGATCACAGCGGTATCTTACACTTGCCAGTCTTACTTTGTGCTTACCAAGAACCAGGACGTTTATAAGTGTGTGGATGGGAAATGGGAGACTCCTCCGAAATGTCTCAAACCTTGCGAAATTGATGATTTTGTTGAGCAGTACAATCTCAAGCTTCCTACGGGAAAGGTCTACATAAAGCACGCTGAAAAGTATAGACTTAACTGTACAGATGGATGGAATGCTGGGAATGAGATTAAAGAGTACGTGGACGTGCTGTGCTCCAACGGACAGCTACAGATTGACAAAAGTTGtgatacacaaaataaaagaaaataaactggaGTGGTAATTGAGTTCTTGTCACTGCACTTGGTTACTGGatcctcagcagtgaatgggtgccgccagaatgacAGTCTAAAAAAACATCCAGTCAACATCTTCTGAAGTGAAAATCCAACTTCCAACTGCTGCTTTCGGTGAAGTCCTCTATGCACATTAaagctttctccagtgaaagaGTCATCTTATcagaatcaggagagaaatatgcagatAAAACCTTTTCAGCCCTCTCCTATCACACTGCAGACTTGACCTCTTGTAAATGTTCTCGCACCTTATAAAGTTCAAATCAATATTC

Function

GO:

id name namespace
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224862 lncRNA downstream 17653 11841588 ~ 11845142 (-) False LOC122327182
TU224864 lncRNA downstream 17653 11841588 ~ 11845142 (-) True LOC122327182
TU224850 lncRNA downstream 68571 11793596 ~ 11794224 (-) False LOC122327290
TU224804 lncRNA downstream 272872 11587661 ~ 11589923 (-) True G151919
TU224780 lncRNA downstream 311925 11550198 ~ 11550870 (-) True G151904
TU225279 lncRNA upstream 122429 11992713 ~ 11993033 (-) True G152223
XR_006247625.1 lncRNA upstream 122839 11993123 ~ 11997045 (-) True LOC122327268
TU225291 lncRNA upstream 155828 12026112 ~ 12026795 (-) False G152234
TU225292 lncRNA upstream 155828 12026112 ~ 12026795 (-) True G152234
XR_006247624.1 lncRNA upstream 206457 12076741 ~ 12080117 (-) True LOC122327264
XM_043223483.1 mRNA downstream 7118 11845866 ~ 11855677 (-) True LOC122327836
XM_043222365.1 mRNA downstream 17943 11841588 ~ 11844852 (-) False LOC122327182
XM_043222517.1 mRNA downstream 47217 11804815 ~ 11815578 (-) True LOC122327288
XM_043222518.1 mRNA downstream 47218 11804815 ~ 11815577 (-) False LOC122327288
XM_043222520.1 mRNA downstream 58097 11793573 ~ 11804698 (-) True LOC122327290
XM_043222317.1 mRNA upstream 160178 12030462 ~ 12032362 (-) True rgs2
XM_043223915.1 mRNA upstream 169992 12040276 ~ 12043067 (-) False si:ch211-117l17.5
XM_043223914.1 mRNA upstream 169992 12040276 ~ 12043065 (-) True si:ch211-117l17.5
XM_043222479.1 mRNA upstream 177573 12047857 ~ 12049538 (-) False si:ch211-117l17.6
XM_043222478.1 mRNA upstream 177573 12047857 ~ 12049534 (-) False si:ch211-117l17.6
unassigned_transcript_2544 other downstream 514344 11348380 ~ 11348451 (-) True trnaq-uug_21
XR_006247709.1 other downstream 674117 11174143 ~ 11188678 (-) False rex1bd
XR_006247708.1 other downstream 674117 11179704 ~ 11188678 (-) False rex1bd
TU224207 other downstream 1440460 10419127 ~ 10422335 (-) True micos13
XR_006247701.1 other downstream 1541132 10286578 ~ 10321663 (-) False polrmt
TU225293 other upstream 175185 12045469 ~ 12049531 (-) True si:ch211-117l17.6
TU225397 other upstream 272558 12142842 ~ 12145575 (-) True G152276
TU225529 other upstream 690589 12560873 ~ 12567345 (-) False LOC122328185
TU225672 other upstream 1035865 12906149 ~ 12914226 (-) False cxcl12b
TU225673 other upstream 1035963 12906247 ~ 12914226 (-) False cxcl12b