RNA id: XM_043223516.1


Basic Information

Item Value
RNA id XM_043223516.1
length 4928
RNA type mRNA
GC content 0.45
exon number 8
gene id midn
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10151462 ~ 10173317 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGCGACGGTCGGAAAGCCGCGTCGCTTTCCCAGACCTCCGCGAAGAATCAAACGAAGCGCGCGATTTAAGGCCTCCACCTTAAATCGCATGCTGACATCGCAAGAAGCGCAGTCTCCGCCCATTCCGCGAGCAGCTTTGTAAAGAGGTGTTATACTTCAACTCCGACGCTCGAATGCTGTCACACGGCGTAGTTTCGGATAGCAGGAGCAGCGGAGTAGACTTGGGATTTAAACCGGCACCTGCACTGGGACGGCTGACTCGTTTGACCGAGCGTACCGGCTGCCGTGGCCACATCTCGGTGGACGTCTTTTCGTGGACGCATCTGAACTTACATTATAATTTCCTCTATACATGCCCAAACTAGGCAACCCTGTGGAGGAATCTGAGACGTTGTCGCGAAACTTTGAGGTTTTCGCCACAATAATTGGCTATCGAATGGACCAGCATCCGAGCGCCAGGAGCTGCAGCAGTCGCGGAGCTGCGCCGTCCTGCGAGAGCGTCTCCGGCGAGCCCCCCATGAATTTGTACATCCACTCCACCACCGGCACACGCTTTGAGCTCTCCCTTCCCGCAGAAGAGACCGTGGAAGGGCTAAAGCGAAGACTCTCTCAAAGACTGAAAGTACCCAAAGAAAGACTCGCTCTGCTACACAAAGAAACACGCCTGAGTTCAGGAAAACTTCAAGATTTGGGAATAACGGATGGGAGCAAGTTAACGCTGGTTCCAACAGTTGAAGCAGGCCTAATGTCTCAAGCATCAAGACCTGAGCAGTCAGTAATGCAGGCGCTGGAGAGCTTGACGGAAACGCAGGTCAGTGACTTCCTGTCTGGCCGGTCTCCTTTAACCCTGGCTCTGCGAGTAGGCGATCATATGATGTTTGTCCAACTGCAGTTGGCAGCGCAGCACTCGGGCGGCCCACAGTTACAGCATCGGCATCTCATATCACGTGGGAGTTCAGAGGGCACGACAGGACAGTCTCATCCAGCTTCAGGCTCTGCCTCTGGGATGGCACGGGTTTCACACAACCCTCACCCACATCACCCACACCCCCATCATCCAAACACAACGCTCCCATCTAACCCAGTGGCCTTCCCACCTTCACCCTCTATCCCATCCGTTCCTCCAATGTACCCCACCTCAGCCTCAGGGCACTGTAGCCCTCCACCGCACCCCTCTCAACTCCCTGGAAGTTTTCTTCACTCCCAGCAGCCATCTTCAGCCTGCCCCACCTCTCCAAGCAGCCCTAACCCCTCAGCTTCCTGTCCAGAGGCCAACTGCCCAGCAAAGACGTCTGGCAATTGTAACACTCCTTCGCGATCCCGCAAGCCAGGGGCTATCATTGAAAGTTTTGTGAACCATGCTCCTGGGGTCTTTTCTGGGACATTTTCAGGCACTTTGCATCCCAACTGTCAGGACAGCACTGGACGTCCCAGGCGAGATATAGGCACCATCCTTCAAATCTTGAATGACCTTTTAAGTGCCACCCGGCATTACCAGGGCATGCCACCGTCGCTCACGCAGCTCCGTTACCAGACCCAGTGCAACAGCCCTAATTCACCAACACCGTCGCCACCGCCTTCACCTCCCCACACCCCTGGACTAAACAGCCTGCCTACTACAGTGCCGTCTGAGACCCAGCCCACTCTCCACCCACTGGTGCAGTGCCAGAGTCAGATCCGCATGTGCAAGCCTCCTGGTGACCGGCTGCGTCAAACAGAGAACCGAGCTACACGCTGCAAAGTAGAGCGACTGCAGCTGCTCATGCAGCAGAAGCGTTTGCGCAGGAAGGCCCGGCGAGACTCCCGTGCTCCTTACCACTGGCTCCCCAACCGCAAGGCTGGACGGAGCAACAGTAACAGCAGTATGTCTAGTGAAGGCTCCCTGGACCTAGACTTTGAGGACTCTGTGTGGAAGCCCGATGTCAAAGCCGATATGAAATCAGAATTCATCATGGCCTGAAGCAGCAACAGTTGCGCCATCCTCATCAAGGATGACTGGGGTTTACATTTTAGAGAGGAGAATTTCCCGAAGACTGTGTCCGAAGGCAGAATCTCGTAGGCTTCACTCCTCGTCTATCCTGTGACCACAAAGACTTTACACAAAGGAAGATTCACAGACTTTTACTTACCTTGCGTCCTTGATAGACTATGATCTTGGAATAGACTAAATTTTCAAATGACGATGTTTGGATATGGATTGGACTGATGAATAGCCAGAATTTGGACTCAGAACGTCCAAGAAGTCAACACAAATGAGCATAGCAGACGTCATCGGTGTTGggatttgtttttctctttcctttttttgtttttctttttaccccAGGGGAAAGATCCATACAGGCCAAATACAGGCACGATGAACTAACAAAATCAGATACTGATCCTacttcctcctttttttttcattacaaatgGGCATTCACAGTTCAAGAATCGTTTTGAAGGGGGTTACCTTCTTTGGTTTTAAGTCCTGTTTTTCTTGAATCATGATgatttatgaaacaaaatatgtaGCATTACCCACAAAGCATTCAGGTTTTTTATCTCGTAGACGAGGAGGGTCATTTGCACACACACCTGTGATTTGAAATAGACAATATCATAACATAACCAAGAGATGGCACAGTGCATgtttagtatataaatatataaaaataaaaatacaaaaaatgctttctcaaCAACAGCTCAGTGTAGAGTCAGAGGTTCAAGTAGGAAAGTAAAACATGACACAAAAGGAAAATATGCTGATGTGATGGAAGACACAAGGTTTGTGAAGTCggttatttttagaatatataaagtgactttttttttgttttttggttttttttttacctccgcgaaaaacaaacaaaccaaccaaaCGTAAAACAGCAGTTGCTCAGCAAGGCTCGAGTCAAGCTGTGAAATGAATCTGATgttatataatcatttaaatacacactgtATCTCTCCTGTTACTGTCTAAATGTGTATAATAGAGAGAGTGGTGGGGTGCCAGAGGAATAGTTTACAATTGTGCATTATAATGGCTTGCTCTGCCAAAGTGGAATCtctcatttatgcatttgactACAAAAACCACCATTCGAGGGTTTTATCCCAGCAAACACTTACAGTTGTGATACGGTTTTAACAAGGCTACCCATATTTACCCATCCGTTTGTCCGGACCTCTTTGCAGATTCCCACGTAAACATCCAGACCGGAGCGTATTCGCCCCCCGCCCCCCGCCTTCACACTCTTGATAGTGCCTCATACGTAGACGAACTGACATATTCTATCAGGCGTTCCACAGACAGACGGTTCTGCTGCTATACGGGACTTCTCTTTGCATGCAAAAGTGTGAATTATCCtgatcatttttatagaaaataatattaataataacaatactgaGAAAGTGGTGCTGAAAAGATATACAAGCatgaatttgtgaaaaaaaaaacaaaaaaacatttgctccAGCTACTTGGGATTTTCGATTAGGAATGTGATGTTACATATCAGTCGCAAACCAAAACGGGACTGGAAGTCTACTGTACATGGATCATTCCTGGACTAACTAAGGAACAATGGAACATTCAAGGGATCCTCAGAGCAAACCCCAACACTCCCATCGACCTTGTCCAGATGCGGGCTAACAGGGATGTTAGAAACCGACGTTCGCCCCTAATGACTACTTGGAAATAAACGTCAAAATGTCCTGAACCACATCGATGTTGCACTCACTGAGTTTGCAATGAGATTACCTACCTGAAGGGGAACAttgtcttttccttttttttctgttcaagTGGCCTTAACGTTCATTATCGAAACACTTGCAGAGTGGTGGACAACATAgggatgtttttgttgtttttgtcctgtgtttttgttaaagCATCAATTTTTCGGGGGCAATTTTTGTGTTTAGGAGGTGGAGGCTCTATTATGTCAAGGCTTCAGTGCCTTAAAGTTTTGCCCCTTCGGTgtgtacgaaaaaaaaaaatatctgaacaAATTATTCGCATTTATGCAGGTTTTTATCAATTTCTAGGAGCTCTGGTAgaatattgtctgttttatgGTTTGATTGTTACAAGTCACGACCTGGAGTTCAAACAGGTTCCATCAGTGTGTTCCGTTGTTTGTTTGATTACGTCCCTTGAACCCTGCTGTCCTACAAAGAAGCAacaaatttacaaatttaattgaaaaaaaaaaaaaaaaaaaaaggaagtttcAACTGCAGTGCTATAGCAACAAAGTGCCCTAACTCTCAATTGAGATGTCCTTTAAGGACACGTTGACAACATGCACTTCCCTTCTTAGATAAATGACTTCAATGGACGATTTCTCCCTCTCCCCCaagaaaatcattatttaatttttatatatgtatgaaatatacTCTGTGTGTGCCTCACCTATatgtaaaacagtaaaaaaaaaaaaaaagtgaaaattgaaaaaaagcatAGGAGATGATCTGAGTTTTAGGATAGGGTAATTGAATGAGGGTGGAGGGAGGGAACGGGGGGCATTTTCAATAGTTTGTTGGAGTTCTGATCACATCATTTAAGTTGCCTGTTCTTTCTTGTAGCCAATGAAAACTGATTACAagagttgagaaaaaaaaaaacaatttacaatGTTCTAGCTATAGACCGGTGTAGCACATGTGTGACTGTATTAATTTATGAAACCAAAATGGTAACTGTGAATTATGTAtttctttgtgctttttttaaagtgggCGGAAAGGTGGAAAAGGGCGTTGCTGtgccctgttttgtttttgtggaatataatggaaataatcaagttaaaaaaaggaaaatatctaaatatatttttttcttaagcaATACATTTCAGTGTGACTTGTGATaggacattttctttttttaggtaataaattgaaagaaaaaaaata

Function

GO:

id name namespace
GO:0005730 nucleolus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224106 lncRNA downstream 78570 10053918 ~ 10072892 (-) True G151439
TU224111 lncRNA downstream 123023 10023218 ~ 10028439 (-) True G151444
TU224082 lncRNA downstream 168315 9963097 ~ 9983147 (-) False G151425
XR_006247729.1 lncRNA downstream 285574 9819693 ~ 9865888 (-) True LOC122327858
TU223934 lncRNA downstream 530297 9616790 ~ 9621165 (-) True G151319
TU224138 lncRNA upstream 16513 10189830 ~ 10194857 (-) True G151468
TU224127 lncRNA upstream 71601 10244918 ~ 10249842 (-) True G151457
TU224186 lncRNA upstream 201856 10375173 ~ 10375615 (-) True G151507
TU224187 lncRNA upstream 202324 10375641 ~ 10375960 (-) True G151508
TU224252 lncRNA upstream 269170 10442487 ~ 10442738 (-) True G151569
XM_043222485.1 mRNA downstream 71365 10075963 ~ 10080097 (-) False cirbpb
XM_043222483.1 mRNA downstream 71366 10075032 ~ 10080096 (-) False cirbpb
XM_043222484.1 mRNA downstream 71366 10076911 ~ 10080096 (-) True cirbpb
XM_043222482.1 mRNA downstream 71367 10076911 ~ 10080095 (-) False cirbpb
XM_043222481.1 mRNA downstream 71368 10076911 ~ 10080094 (-) False cirbpb
XM_043223518.1 mRNA upstream 9721 10183038 ~ 10187587 (-) True atp5f1d
XM_043223055.1 mRNA upstream 108705 10282022 ~ 10321663 (-) True polrmt
XM_043223900.1 mRNA upstream 220695 10394012 ~ 10396169 (-) True LOC122328192
XM_043223507.1 mRNA upstream 247193 10420510 ~ 10422354 (-) False micos13
XM_043223306.1 mRNA upstream 293810 10467127 ~ 11650822 (-) False LOC122327734
TU224081 other downstream 187836 9957811 ~ 9963626 (-) True G151425
TU223881 other downstream 648456 9498680 ~ 9503006 (-) False gpx4a
TU223882 other downstream 649780 9498680 ~ 9501682 (-) True gpx4a
XR_006247698.1 other downstream 1009603 9013553 ~ 9141859 (-) False nfia
XR_006247701.1 other upstream 113261 10286578 ~ 10321663 (-) False polrmt
TU224207 other upstream 245810 10419127 ~ 10422335 (-) True micos13
XR_006247709.1 other upstream 1000826 11174143 ~ 11188678 (-) False rex1bd
XR_006247708.1 other upstream 1006387 11179704 ~ 11188678 (-) False rex1bd
unassigned_transcript_2544 other upstream 1175063 11348380 ~ 11348451 (-) True trnaq-uug_21

Expression Profile