RNA id: XM_043223518.1


Basic Information

Item Value
RNA id XM_043223518.1
length 760
RNA type mRNA
GC content 0.55
exon number 5
gene id atp5f1d
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10183038 ~ 10187587 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGACGGGAAAGGTTGTCCATGCCCTTGTCCTATCAGCCGCGCACTATCTGACTGACCGAGTGTCTGTGTGGACGGGGAAGCCGACGCTTGATTATCACCGTGCCGTAACGAGTCGCTTCTCCGTGGTAAAGATGCTGGCTGCGAGGTTTCTCCTCCGTCGCGCGGTCCCCGCACTGAGACACGCGCGTTGTTACGCCGACGCGCCCGCCGCTCAGATGTCCTTCACTTTCGCGTCGCCGACACAGGTGTTCTTcaaggaagccagtgtaaaacAGATTGATGTCCCGACCCTGACAGGCGCCTTTGGTATCCTCCCAGCCCACGTCCCCACGCTGCAGGTGCTCCGGCCCGGCGTAGTCACCATCTTCAGTGACGATGGTTCCTCTGCTAAGTATTTCGTGAGCAGCGGATCAGTCACCGTCAATGCCGACTCTTCGGTGCAGCTGCTGGCGGAGGAGGCCGTTCCTCTGGACAGCCTGGACCTCGCAGTGGCAAAAGCCAACCTCGAGAAAGCCCAGTCGGAACTGGGGGGCGTTTCAGATGAAGCAGCCCGGGCGGAGGTTCTGATCAGCATAGAGGCAAACGAGGCAATCGTCAAAGCATTGGAGTAAACAATGAGTAAATTTGTGTTGGATTTTTTGTCGGTGTGAAAAGGTCTCCGGCTTTGTCTGTTCCTCACCCCAGTGAAGTCAGAAACCACAAGACTTAACTGCTTGCTTTGTACAGTGGaagaaatgaacaataaatttatttgaaataa

Function

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02134 ATPeF1D, ATP5D, ATP16; F-type H+-transporting ATPase subunit delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224106 lncRNA downstream 110146 10053918 ~ 10072892 (-) True G151439
TU224111 lncRNA downstream 154599 10023218 ~ 10028439 (-) True G151444
TU224082 lncRNA downstream 199891 9963097 ~ 9983147 (-) False G151425
XR_006247729.1 lncRNA downstream 317150 9819693 ~ 9865888 (-) True LOC122327858
TU223934 lncRNA downstream 561873 9616790 ~ 9621165 (-) True G151319
TU224138 lncRNA upstream 2243 10189830 ~ 10194857 (-) True G151468
TU224127 lncRNA upstream 57331 10244918 ~ 10249842 (-) True G151457
TU224186 lncRNA upstream 187586 10375173 ~ 10375615 (-) True G151507
TU224187 lncRNA upstream 188054 10375641 ~ 10375960 (-) True G151508
TU224252 lncRNA upstream 254900 10442487 ~ 10442738 (-) True G151569
XM_043223516.1 mRNA downstream 9721 10151462 ~ 10173317 (-) False midn
XM_043223515.1 mRNA downstream 9722 10151462 ~ 10173316 (-) True midn
XM_043222485.1 mRNA downstream 102941 10075963 ~ 10080097 (-) False cirbpb
XM_043222483.1 mRNA downstream 102942 10075032 ~ 10080096 (-) False cirbpb
XM_043222484.1 mRNA downstream 102942 10076911 ~ 10080096 (-) True cirbpb
XM_043223055.1 mRNA upstream 94435 10282022 ~ 10321663 (-) True polrmt
XM_043223900.1 mRNA upstream 206425 10394012 ~ 10396169 (-) True LOC122328192
XM_043223507.1 mRNA upstream 232923 10420510 ~ 10422354 (-) False micos13
XM_043223306.1 mRNA upstream 279540 10467127 ~ 11650822 (-) False LOC122327734
XM_043223305.1 mRNA upstream 279540 10467127 ~ 11650822 (-) False LOC122327734
TU224081 other downstream 219412 9957811 ~ 9963626 (-) True G151425
TU223881 other downstream 680032 9498680 ~ 9503006 (-) False gpx4a
TU223882 other downstream 681356 9498680 ~ 9501682 (-) True gpx4a
XR_006247698.1 other downstream 1041179 9013553 ~ 9141859 (-) False nfia
XR_006247701.1 other upstream 98991 10286578 ~ 10321663 (-) False polrmt
TU224207 other upstream 231540 10419127 ~ 10422335 (-) True micos13
XR_006247709.1 other upstream 986556 11174143 ~ 11188678 (-) False rex1bd
XR_006247708.1 other upstream 992117 11179704 ~ 11188678 (-) False rex1bd
unassigned_transcript_2544 other upstream 1160793 11348380 ~ 11348451 (-) True trnaq-uug_21

Expression Profile