RNA id: XM_043223529.1


Basic Information

Item Value
RNA id XM_043223529.1
length 914
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC122327872
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10381507 ~ 10382779 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCACTGATTGTCTTCATGATGGCCTTCATCTCTCTGCTCCTGCTGATCTCTCTGCTGCCAAACCTGACCTTCACTGttcatGTGAAGGGGGGTATAGTGAACGGCACAGAAGTAAAACCCCACTCCAGACCTTTCATGGTTTCTCTTCAGAAGAACTGGAGACATGTCTGTGGTGGATTTCTCATTTCTGATAGATTTGTTATGACTGCTGCACACTGCTGGAAAAATGAGAACCTAACAGCTGTGGTTGGTGCACATGACCTAAGACAGAATGAAGTGCTTGTCCGCATTGGTGTGAAGTCCTACCACGTGCATCCTGAATTCAACAAGCACACTTTGCAGAATGACATTATGATTTTGAGGCTAGAGAAAGAAGTCGAACAAAACAAGAATGTAATGAAGATTTCCATATCAAAAAataagagagagatggaggctGGTTCTGTCTGCAGTGTAGCTGGCTGGGGAAGACTGAGCTTTAACGGGAGAAAGACTTATCGTCTCATGGAAGCAAATGTGAAGATCATGGATAACactgaatgcaaaaataaatggaaagacAACTTTTCAGCCTCAGAGATGATGTGTGTCTATGGCCACGGAGGAAGCTGTAAGGAGGATGGAGGAGGTCCTTTGGTTTGTAAAGACACTGCAGTCGGTGTCACTTCCTTTGGTGACCCAAAAATCTGCAATAATCCTGAACGACCTGAAGTTTATGTAAAGATTTCTGCATATATTCCATGGATCTGCTCGATTATCGCAAATGTTAAGTGATTTTTGcaacaattttttaatttgtttaaatgttcaaTAAACAATGCATCAAGGATCAGTTGTAACTGGTGCTTATTACTGTAGCCCTATGAAATAATTGAATCCTTATCAGTAgatttctattaattaaaattacatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224164 lncRNA upstream 32621 10347829 ~ 10348886 (+) True G151487
TU224024 lncRNA upstream 192335 10188578 ~ 10189172 (+) True G151382
TU224015 lncRNA upstream 193924 10185635 ~ 10187583 (+) True G151373
TU223986 lncRNA upstream 219061 10151480 ~ 10162446 (+) True G151345
TU224002 lncRNA upstream 243305 10137445 ~ 10138202 (+) False LOC122327864
TU224196 lncRNA downstream 5771 10388550 ~ 10421036 (+) True G151516
TU224294 lncRNA downstream 283277 10666056 ~ 10669212 (+) True G151592
TU224310 lncRNA downstream 318843 10701622 ~ 10702328 (+) False LOC122327757
XR_006247710.1 lncRNA downstream 319094 10701873 ~ 10709748 (+) True LOC122327757
TU224309 lncRNA downstream 324620 10707399 ~ 10709755 (+) False LOC122327757
XM_043223918.1 mRNA upstream 2817 10376708 ~ 10378690 (+) True LOC122328210
XM_043223923.1 mRNA upstream 7381 10372204 ~ 10374126 (+) True LOC122328213
XM_043223924.1 mRNA upstream 10994 10369095 ~ 10370513 (+) True LOC122328214
XM_043223920.1 mRNA upstream 19298 10360126 ~ 10362209 (+) True LOC122328211
XM_043223921.1 mRNA upstream 19298 10360126 ~ 10362209 (+) False LOC122328211
XM_043223899.1 mRNA downstream 2584 10385363 ~ 10392871 (+) True LOC122328190
XM_043222364.1 mRNA downstream 15490 10398269 ~ 10399548 (+) True LOC122327181
XM_043223452.1 mRNA downstream 17647 10400426 ~ 10401727 (+) True LOC122327821
XM_043223451.1 mRNA downstream 24366 10407145 ~ 10408483 (+) True LOC122327820
XM_043223901.1 mRNA downstream 27478 10410257 ~ 10412454 (+) True LOC122328194
XR_006247720.1 other upstream 388066 9970622 ~ 9993441 (+) False gatad2ab
TU223980 other upstream 417873 9923547 ~ 9963634 (+) False LOC122328159
TU223981 other upstream 417873 9928679 ~ 9963634 (+) True LOC122328159
TU223982 other upstream 417873 9931139 ~ 9963634 (+) False LOC122328159
TU223952 other upstream 488018 9888200 ~ 9893489 (+) False borcs8
XR_006247780.1 other downstream 326265 10709044 ~ 10709110 (+) True LOC122328232
TU224353 other downstream 423273 10806052 ~ 10837365 (+) True G151620
TU224351 other downstream 433356 10816135 ~ 10837365 (+) False G151620
TU224458 other downstream 536281 10919060 ~ 10921928 (+) False si:dkey-172o19.2
XR_006247707.1 other downstream 935910 11318689 ~ 11323940 (+) False mier2

Expression Profile