RNA id: XM_043223562.1


Basic Information

Item Value
RNA id XM_043223562.1
length 3710
RNA type mRNA
GC content 0.50
exon number 28
gene id rrbp1b
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12385990 ~ 12397446 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATGAGGTCGCGTATCGGCTTCACAGGCGGGCGCTGAGCCAACTCGCAAAAGTGCCACGACTCCAAAAGTCAGCGGCGATTCTTTATCACTGTGAGTTTGACCGCAGGATCAGGATTAGGAAGGACGGAACTGAGCAAAGATGGACGTGTACGACCCTCAAACTCTGGGAATTGTGGTGTTCGGTGGCTTCATGGTGTTCTCTGCCATTGGCATTACCCTTGTGTCAACTTTTTCAATGAAGGAGACCTCTTATGAAGAAGCCCTGGCCAAACAGCGGCAAGACTCAGGCAAGATCCATTCCCAACGCTCTgacaagaagaaaaagacatctgaaaagaaaaacaaggccaagaagaaggaggagaagcCAAATGGGAACCTTCCAGAACCTGAGCCTATCCTTGAACCTGTGGTTGAGAACAGTGAGCCTAAAGCAGTACCCCAAGTTGAACCAGAACCCCAACCTGAACCTGTGCCTGTACCCAAGCCAGAACCTGAAGTTAAACCCAAGCCAGCTGTACCTGAACCAGCTCCCAAGATTGTGGAGTGTCCTGTCCCTCCCACTGTAAGTGCTGTGGCCCCAGTTGCTTCTTCCCCcaaggagaagaaaaagaagaaggtGGCCAAGGTGGAACCAGCTCCTGTCAAACCTGTGGAGGTACCAGAAGTTATAGTTAAGGTGGAGCCGGTGGTTGCAGAGGTGGCTGTGAAAGCAGCAGTCGCCCCTGAGGTTACTGCTCCCCTTAAAGCAGAGGAACCCAAAACTGAAGCTCCATCCAAGAAGAAGTCTAAGAAGAAGGCTGAACCAGTTACTTCTGTGGAAACGGTCAATGTCCCCCAGCCATCACCATATAAAAATCTGGTCTCCAGTTTGAATAGTGCATCTTTCAGTGAGTCAGAGACCCAGAAACTCTTTGAGATCATCAGCAAGAAGGCAGGAAAGGACTCTTGGCAACTGGCATCTCAGAAGGGTGACCCATTGGCTGCACTGAAGAAGCAGCTGGAGGAGAAGGAAAAGCAGCTAACCGCTGAGCAGGGCAACGTAGCCGCAGCCAAGACCCGTGTTAAAGAGCTTACCAAGGAGCTGAGTTCTGCAAAGAGCAAGATGACAGCCACAGAGACCCGCATGAGCTCAGAGCTGAGCAACCGAGGCCAGGAAATTGAAGCTCTTCAGGCTCGTATGCAGGCATCCTACCAGGAGCATGTCAAAGAGACACAACAGCTCAACAGCAAGATCCAAAACCTGCAGGAGCAGTTAGAGAACGGACCCAATGCTCAGCTGGCCCGTCTGCAACAGGAGAACTCCATTCTTCGAGATGCCCTCAATCAAGCCACTAGCCAAGCCGAAAGCAGGCAGAATGCAGAGTTGGCAAAGTTGCGCCAGGATTGTGTGCGTCTCAACCGGGAGCTGAAAGAACGCACAACCGCTCAGCATACCGAAGAAGAGCGCAGGAAGTCTCTGGAAACCAAGATGGCAGCTGCCGAAGAACAGTTAGCACAAACAAAAGCATCCCGTGTGGAAGCAGAGCAGGCTCTGCGGAAGAAGTTGGATCGTGTCAATGAGGAACTCCGCGAGACTCAGCAAGGCAGCACTACCCTTCAGGCTCAAGTAGATGCAGCAAAAGGGCAAGCCAAGACTCTCAACGAACTCCAGGAGCGAATGCATTCCACAGAGAAAGAGCTGAAAGACAGATGTGAAGAGCTGGAGATATTGAAAGCACAGTTGTCACAGACAACAATGGTTACTGAGGAAAAGCCCTCTGTGGAGGTAGAAGCAACAGCACAGGCTGAGATCCAGAAGGAGGTTGAACAGTTGAGGAGCAGCCTAAAAGAGAGGGAAGACCAGCTGACATCACTAGAGGCAGAGTTTAATCAGCTGAGGGAGGAGCTTGACACAGTAAAGAGAACTCAGGCCGAGGAAACTCAGAATAGGGTAAATGAGGCCGACACTCAACGGAGAGAATACTCTGCAGAGATCGACCAGCTTAGAACTAGtctaaaagaaaaagaggatttGGTGGCATCTCTACAGGCTCAGCTGGAAAAGATGGGTGATAAAGCTGAAGCAGAGCCGCCATTTGAGAAtcTGGAGAAGGACGCACACATGATCTCACTGGAGGAGGAACTTCAACAGCTTAAAGAAGAGATGGAGAGAATGAAGGCCAAAAGCAATGAACTGCGTGAGAAGAACTATGCTGCGGTGGAGGCTCTGTCTGCTTCTGAGAGGCTGAGTGAAGAAAGACTGAGCCAAGCCAAGGCCGCACAGagtgAAACTGAGCAGCAGCTTAGCTCTTTCCAGTCAGACACCAGAAACGCCTTCCAGAAGCTCTTCCCTCACATCAACGTAGAAACACAACAATCGAACTGGCTGGAAGCATTCACACACGAAGCACAGAAGACTCTGACACTCAGTCAACAGAGTCCAGCAGAACAGCTCAACACTGTGTCAAGCTCAGATTCAGCGGATCTGCAGCAGAAGCTCGCTCTGTCAGAGGAGAGCCAGAAGTCACTCCAGGCCGAGTGTGAACAGTACAGATCTACTCTCAGTGAAACGGAGAGCATGCTGAAAGTTCTGCAGAAGAGTGTGGAAGACGGCGAGATCGTGTGGAAGTCGAAGATTTCAGATGCTGAGCAGCAAAAACGGGCGGCCCTGGATCAGGTGAAGGTCCTAGAGGAGACAATGGAGAAGATGAATGTGGAAAGACAAGACACGGATCAGCTGAAGGGGCAGGTGATGCTTTTAGAAGCACAGCTGGAGAAACAACTGGAGTCCTTAACCGTCAGTCAAACGTACGCAGAGGAGATGTCTGAGCTGAAGGCAATGCTATCAGACACTCAGGTCCATCTGCTATCAGCTCAAGCAGAGGCTCAGCAACAGAGAGCAGAACTTGCATTGGTCAAGCAAGAGCTACAGGAAGCGACTCGACGAGCACAGAGCGACGAGAGCTCACAGTCCATTCAGGTGAAGACACAGCTGGAGGAGGCAACCAATAAACTGCAGACAGAAGAGGACATTCGGCTGCAGGTTGCAAGCGACTATGAACAGACTCAGAAGTGCGTCAGGGATCTGGAGGCTCAGTTAGAAGAGTTGAAAGCTGCTGGAGAAGGACCAGCCGAAGAGCTAAAGGAGAGgctggagaaagagaagaagctGACGCGAGACCTGGGCCAGGCAGCCGCTAAACTTCAACAGCTCCTCAAGAGCACTCAAGGAGAGCTGGACCAAGAGAAAGAGACCGTGAAGAACCTGCAGGAACAGTTACACGGCAAGgAAGCCGAAGAGTCAAAAGAAGGGACGTCTGTTTGACAGAATAAACCCTGCAACCCAAGTGCCTTAATTGTTCTTatgcattatttacttttgtattcTCTGCGACTGTAGCGAATATGCTGACTGTTATTAGCCAATGAGGATTGTTGAGGGAGGAAGCGTAACAATGTATTTGTGACTTTTGTCATGAGGTGACCGCACACATCTAATAAAGTTTAAACACGGCAAAACCGCTAGCAGTGTTAAAAGAGAGCCGTGCTCGAGTGAAAGACACACGATGATTTGTGCAATCgctctttttatcttttgtttgcATGCTCTCACGAGGGTCAAAGGAAGGAACATTTCATAACGCAACAATGCAACACAGCCTACTGCACACTTGTGGTCGGCTGGTAACAAATgtgatgattataataataaagtatatacTTTGA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component

KEGG:

id description
K14000 RRBP1; ribosome-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224994 lncRNA upstream 54145 12306554 ~ 12331845 (+) True G152028
TU224903 lncRNA upstream 118495 12241277 ~ 12267495 (+) False LOC122327127
TU224932 lncRNA upstream 132704 12252841 ~ 12253286 (+) True G151983
TU224918 lncRNA upstream 134644 12250736 ~ 12251346 (+) False LOC122327127
TU224982 lncRNA upstream 146546 12239108 ~ 12239444 (+) True G152016
TU225052 lncRNA downstream 29310 12426756 ~ 12426972 (+) True G152068
TU225093 lncRNA downstream 181836 12579282 ~ 12617819 (+) True G152095
TU225094 lncRNA downstream 181836 12579282 ~ 12580339 (+) False G152095
TU225089 lncRNA downstream 183393 12580839 ~ 12620676 (+) True G152092
TU225101 lncRNA downstream 192467 12589913 ~ 12629300 (+) True G152101
XM_043223476.1 mRNA upstream 12833 12364335 ~ 12373157 (+) True dzank1
XM_043222310.1 mRNA upstream 189411 12189240 ~ 12196579 (+) False LOC122327127
XM_043222311.1 mRNA upstream 189411 12189240 ~ 12196579 (+) False LOC122327127
XM_043222287.1 mRNA upstream 196984 12175687 ~ 12189006 (+) True LOC122327107
XM_043223780.1 mRNA downstream 874 12398320 ~ 12408232 (+) True aars2
XM_043223781.1 mRNA downstream 10915 12408361 ~ 12411841 (+) True LOC122328076
XM_043222228.1 mRNA downstream 17136 12414582 ~ 12421657 (+) True LOC122327054
XM_043222229.1 mRNA downstream 24235 12421681 ~ 12424702 (+) True LOC122327055
XM_043223486.1 mRNA downstream 71672 12469118 ~ 12471335 (+) True LOC122327840
TU225014 other upstream 40240 12345206 ~ 12345750 (+) True G152043
TU225015 other upstream 40240 12345206 ~ 12345750 (+) False G152043
TU225002 other upstream 91273 12293400 ~ 12294717 (+) True G152032
TU224914 other upstream 120298 12238782 ~ 12265692 (+) False LOC122327127
TU224911 other upstream 122959 12048418 ~ 12263031 (+) False LOC122327127
TU225049 other downstream 11860 12409306 ~ 12423922 (+) True G152065
TU225046 other downstream 17126 12414572 ~ 12423922 (+) False G152065
XR_006247603.1 other downstream 710060 13107506 ~ 13112733 (+) True LOC122327162
XR_006247605.1 other downstream 712249 13109695 ~ 13112733 (+) False LOC122327162
XR_006247602.1 other downstream 712255 13109701 ~ 13112733 (+) False LOC122327162

Expression Profile