RNA id: XM_043223568.1


Basic Information

Item Value
RNA id XM_043223568.1
length 10028
RNA type mRNA
GC content 0.51
exon number 15
gene id si:ch1073-335m2.2
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 495248 ~ 514839 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCCGCCGAGGGCTCCCTCTCTCTGCGCGTTCCCGCTCGTGCACGCGCAGGGCCGCGAGATCTTCTTCCTCACGCGCGCTAGAAGCGGATTTTTACCTCACGGTCGGAGATTAAACGACGCGAAGGCGCATATATGTGCATGAACGGGACGCGGACGACGCAGGATGGTTCGGGAAACCAGACACCTCTGGGTGGGAAATTTACCCGAACATGTTCGCGAGGAGAAGATCGTGGAACATTTTAAACGGTATGGCCGGGTGGAGAGCGTCAAGGTCCTGCGCAAGCGCGGCTCTGAGGGCGGCGTGGCGGCCTTCGTGGATTTCGTTGACATCAAGAGCGCCCAGAAGGCGCACAACGCCGTCAACAAAATGGGGGACAGGGACCTTCGCACCGATTACAATGAGCCGGGTTCAGTGCCCAGCGCCGTGCGGGGCCTGGAGGACGGCACCCCCTCGAGCAGTCACGCAAGGGAGGTTGCGGGGTTCTCGAGGAGCGCCGTGGGGCCGGTGTACGGGCCCCCGGTGTCTCTCCACACCAGAGAGGGGCGCTATGAACGCAGACTAGACGGCAGCGGCTCGGACAGCCGGGAGCGAGCGTATGATCACAGTCCGTACGGACACCACGAGCGCGGCGGCTCCTTCGATCGTCCGCGCCACTACAACACAGACTATTACCGGGACCGCACCATGTTCGCCTCTGGGGTTAGCTCCAGCCCGGCCGCCAGCACTATCAGCGGTGGCTTCGAGGCGCCGGAGTCTCACTTCGAGTCTCGGATTCGTGATCCCTTCACCATCTCCAGCTCGGCTCGGCGTGACCCGTACCGCGACGACAGGGGCCGGCGGGCAGACCGAACCTACCACCACCGACGGAGCCGGTCCTCGCACTCTTCTCAGTCGCGGCACCCGTCTCCCCAGAGGAGCGCCGGACAGACCCCTAAAGCTGCCCACTCGCCCAAGAGAGCAGCCGTGTCGCCCGGCCGGGGCCCGAGGTCCCGCTCGCGCAGCCCGTCTTCCAGCTCCGACTCCGTCAGCAGCACCAGCAGCACCGGCAGCGGCAGCAGTGATTCGAACAGCAGCTCGAGTGAAGGCTCGCGAGCGCGCTCAGTGCAGTCGACGGCCACCCACGCCCCTCCGGCTCCTCCCGTGCTCGCGCTGGACTCCGACGAGCCGCGGAGGAGCTTCGGCATCCGAGTCCAGAATCTCCCGACGCGATCCACAGATACGAGTTTGAAAGACGGGCTCTTTCATGAGTTTAAGAAGTACGGTAAGGTGACTTCGGTGCAGATCCATGGCGCGTCGGAGGAGCGCTACGGCCTGGTGTTCTTCAGACAGCAGGAGGACCAAGAGAAGGCCCTCAGCGTGTCCAAGGGCAAGCTCTTCTTCGGGATGCTGATTGAGGTCACGGCCTGGAACGGCCCCGAGACGGAGAGTGAGAACGAGTTTCGGCCCCTGGATGGACGCATCGACGAGTTCCACCCGAAGGCCACTCGTACGCTGTTCATTGGAAATCTGGAGAAGACCACCAACTATCAGCAGCTGCTCGATGTCTTCCAGCGCTTCGGGGAGATAGTGGATATCGATATCAAGAGGGTGAACGGTGTTCCCCAGTATGCCTTTGTTCAGTACTCTGATATCGCAAGCGTTTGTAAAGCCATTAAGAAAATGGATGGAGAGTATCTCGGCACCAACAGACTGAAGCTTGGCTTTGGAAAGAGTATGCCAACAGCGTGTGTGTGGCTGGACGGCTTGACCTCAAATATCACAGAACAGTACCTCACACGACATTTCTGTCGATACGGGCCGGTGGTGAAGgttgtGTTTGATAGGTTAAAAGGAATGGCTCTTATTCTATACAACAACACAGATTTTGCCCAAGCAGCTGTTAGAGAAACCAAAGGATGGAAGATAGGAGGAAACAAAATTAAGGTTGATTTTGCCAGTCAGGAGAGTCAAATGGCTTTCTATCGATCTATGCAGGCATCAGGCCAGGACATTCGTGATTTTTATGATATTTCATCAGATCGCAGggATGAACGAAGAACACCTTATCATGACTTTTCCACTGAGCGGGCATATTATGAGAATGTAAGGACTCCTGGAATTTATGCTGAAGACCCCCGTCGAGAGTACCCCGGTCGCAGTCGTGACCGCTACGCAGAGTTGGATCACTACCAAGGAGACCACTATGATCCCCGGTATCACGAAGACCCAAGGGAATACAGAGACTATCGAGACCCTTTTGAGGACATCAGGAAGTACAGCTATATCCAGCGGGAACGAGAACGTGAACGGGAGCGGGAGCGCTTTGAGGCCGGGCGAGGTCGGTGGAGCCCATCTCATCAGCGACGTCCCCTAACTCCCTCTGCTTCGCCGTCACCATCGGATCGTGTGTCGCGAGACCCCGAAAGACGTGTGTACAGACACTCCTCTGAAAGATCTGGAAGCTGCAGCTCGCTGTCTCCGGCCCCGGCTCCTTTTGAGAAGTCTGAGAAATCTCCTGTAGATTACAAATCAGAAGGACTGGAGAGAGAAATGGAGCAGACTGAGGGCGTGAGTGAGCGTGTGAGTGGGGCTGAGAACAAGAAGCGTGGCAGACGCAAGGAGAAGGCTGATAGAGAGAAGGGAGAGAAAGCTAAGCAAAGGAGAGGGAAAGTGCAGTCTCCCAGCGGACCTCATTCTGAAGTGGATAGAGAGGCTAGTCTGGATTTGGGATCTGGGAAGGTTAAGGTTTCCGATATAGAGAGTCAAGAAAGACAGAAGCATAAAGGGGACAAAGAGCCTTCCCCTACTGACCATGTAACTCGCCTTGAGTCTCAAAAGGGAGAGCGGCTTGATCTGTGTAAAAGCGAGTCGCTAGACAGGGATGGCAAAAGCAAggcaaaaaagcatttaaagtcTGACTCCGGTAGTGACGGCAAAGACTCCCTTGTAGATTCTGTCAAACTTGAAGCAAGAAAGAGGCGGTTTGGCGATCCCGGTGGGAAAGCAATACGGCAAAAACGGGGTCGTCTGGAGGAAGATCCAGGTTCTGGGATAAGCCAACCTGCTGACTTTGCTGCAAACGCAGGATTTGCAAAAGAGACAGATGTTGAtataaaaacagagagagaggttCAGAAAAGAGAACACTCCAAACCCAGGATTAGCTCTCATTACAGTCAAAGGGAAGAGCTGGATGGTGCAATGAGAGGGACGTCTCAGGGCCCGTCAATAAGACCAGGTGAAGTGCTTGAGGTGGATGTTTTGGACTCAAAATCTCACCCTGGGCCGAGCATGTCTAGACGATTTTCAACAGATGCCACCTCAGATAAGGACAATAAAGTAAGGGATGAACATATAGAAAATATTGACCTCTCTCAGAGTTACCGGAAACAGATGGAGCAAAACCGACGGCTACGGCAGCAGCTACAGCCACAGGATAAACCAGAGAGGCCAGAAACTCCTCAAGGTGTAGATGCGGAAGATCTTGAACATCGAAGCCTGGTGCATGAGGTCGGCAAGCCTCCACAGGATGTAACTGATAATTCGCCTCCAAGTAAGACCAAGAAACAAGAGTCCTTTGAGATGGAAATGAGTGCTAAGAGAGAAAGGATTTACCGAACAGTCCGGCAGAAGAGTGAAGACCCTGAGTGGAATAACACAAACTCTCCAAGGTTTCAGCATGCGCCTCAACAAAGAGAGGAAGACTATGCAGATCCTCATACTCAAATGACTATGAGAGAAGTAAAAGAAGCATCAAAACCTGAGGATAATGCTCAGACAGATCAGGAGCTTGGTGTTAAACGGATGCATGCCTCACAGATGTCAAAGATGAGTACGTCTTTACAAGACGAGCAGCAAAGACGCTGGGAGAGTCGACTGAAGCAAGACTTGTTACCAGACTTTTCAAGGAACGCTGAGAAAAGACGGCTCAATCGGAAGTACTTTGATTACGGACTTTGGCCTGATTTGGAACCTGGTGAAGTGCGATCTGACTCTGAAGAAGATAGAGAAAATAAGCCCAACTCTCCTGCGCCATCAACATCAGTATCCTTCACTGAAAGACATCGTCCAGACAGATTATCAGAGTCCAAGCTGACACCCTCTCTAGAGAGAAacaaattctgttcttttgcgGATGATCAGACAATCACACCGGATACTAAAGCTTTGTTAGAACGTGCAAAGTCTTTGTCATCATCAAGGGAAGACAACTGGTCTTTCCTCGATTATGATTCGCACTTCCCCAGTTTTCGAAGCAGAAAGGACACCGAGAAGGTGGAGTCCGCACCACGACCAACTCCTTCATGGtacatgaagaagaaaaaaattcgAAGTGAGTCTGATGACAAAATTGATGACAGGAAAGAAGATCCAAAACCAGAAGAACAGGAGAAGAGAGAGTTGTTTGCTTCACGTTTTTTGCACAGTTCTATTTTTGAGCAAGATTCAAGGCGTCTCCAGCATCTGGAACGAAAACATGAGGACCCTGAACATGGTGTTGGATATCTGTACTCTCAGCAAGGCCCAGCAGAAGGGCAGCCTGATCCAGAACCAGTTGTGCTTTTCCATAGCCGCTTTTTAGAACTAACAAGGTTGCAGCAACAAAAGAGTAAAGAACAAAGCCATCAAGATTCCAAGCAAGATGAATGCGTAGATGCAACCAAAGTAATTAAAACACCGGAGGAAGAACAAGCACCACAGCAGCAAAATGCTTCTGAACCTAGTATCCAACAAGCTGAGATTAAATCAGTTAGTCCTGTTCCGGTTCCTCAGACCAGTCCTGTTCCAGTTTCTCAAATATTACCACCTGTTTTAGCAGCCGAAGAATCCTTGCCAACAATGGAAGCTGAAGCTGTTGTTAGTCCAACCTATAATTTGCTTGATTCTTCTATGAAAGAGGAAGATAAAGAGTCTGAACAGCCCACAGCTCAGTCATTGCAGCCTTTGCTTGAGCAACCCTCAGAACCCAATTCTTCAGAATGCCAGGAGTCGAAGATTGCTGCAGAGGAGTCTGCATTTAAAGCTGATGACTCTGAAAGTGCTCAGGACACCAATAAAGTAGTTGCAGAACAGCTCCCAAGCAATGACATGCCAACCAATAATGTACAGCCAGAGGCTGAGCTTCCAGGGAAGTTTCCTGAATCACCAAGTCCCCTCTCACATATCCCTGCTGAGCAACAGGAAAAAGAACCTGAGCCACCTGTGGCACTGGAGTCTGAATCTAATAACACAGATGATCAGAAAAGCGCTGATAATTATCCAGCTGAAGAAGCAGTGTCACCCCCTCCAAAATCAAGAAATAAAAGAGCCAAAACCTCACCTACTGCACCAGTAACAACGACTCTGCCTGCTACGCCAGACAAACAAAGCACTCGCAAAAGTGAGCGCATTGACAAAGAGAAGCTCAAACGTTCATCTTCTCCTAGAGGAGAGACATTCAAGACAACatcagatttaaaatcattaaataagtCACCTGTGCATAGCATGGAAATTGAACAAGGTACAGAGCAGAGTTCACAGTCCGGTAGGGCAAGACGTAGAAATGTGCGTTCTGTCTATGCTACACCGTTTGAAGATGAAACCGTTCTGCAACCCGGAAAAGATGCAGAATCACCTCGTGGTGCACGGAAGCGTGGGGTAGACAGAGATGTAGGTTCTGATGTAGAGACTGTTGCTGTACTACCGATCTCGAGACGGGGACGTCCCCCTAAAAATCGACGCCTAATAGAGGATGTACCAGCAGGCAAAGTAGATCGCTCAAAATCAACAGAATCTAAAGAATTGGATGGCAGTGAAACAAACAGTGAGGGGCTTTCCAAAGTGGGTAAAGGCAAATTTTCACCCCACATGCAAAAAGGAGTCGGCCCAGGAAATGCATCAGCATCTGGAATTGGAAAGAAAGGAGACAAAATGGAGAAAATATTGGAAAGTCCCAAACTTATTACTGAAGAAAACCCTCCTGTTCTTAAAAACCTTAGAATTCGTCTTGATGTGACAGAAGTAAAGGCAATACTTCAGACTAGCGAAGAAGAACCGGTAACTGAAGGGTCTCCCAAAAACAGCTCTCCTGGTGTGTCCTCAAAGGATGAGGTACTAGAAGCTAAATTTGAAAATGATGCCATGGATGATGCTAAAAGTGAAAGGGAAACTTTGCCTGCTGCAACAAAAGCCAACGAACCACATGTAGCTTCGTTGGCCCGAGAGTTGGAGCTTGAGCAGGCTGTTGAGAATATTGCCAAGCTCACAGAAGATGCTTCTACTCTTCAATTTAAAAGTAACCTGACAAAGGCACAGCGTCTGATAGCTGAAGAACCAGAGCGTGACTCAGAAGAAGAAAAGCCTGCAAATCAATCTAGTGAAACAGAGCTTGCTGCTGCTATAGATTCTATCACATCGGAGAACACAGAACAAGTCATAAGCGCTGTTGTAGAATCAGATTCTGATGTGCAGAGTCTTGGGCCCAGTTCAAAAGTATCTGAAACCTGTGTTAGCACAGCAGTCGTTCAGGAGGAGGCAGTAACCACTCCTAGAAAAGGGTGTAAAGGCAGaacaaaaactttaaagaaGGGTAAAGGCCAAAAGGGTGCTGGAAACAAAAAGGAACCCATCAAAGATGTAGTTTTGGAAGCTGAAAATATTCCTGTGAAGTCACCAGAATCTGTACCTGCAGAGCTTCCAACAGCCACAGAAAGATCACCAGCAAGTACAGCCATTGTTATTACTTCCTCATCCAAGCAGGGTGTAAGTTTACCAGCTTCTAATGCGGACACTTCGAATGAACCAGAGCCTCTCAAAACTGAGATGGACATCCCAAAATCCTCTCCAGCGATCAGCAGAAGCCCAACGTCATCCAAGTACCAGCCTTATTCATACAAGAACACATCTCCCTCTCTATCTCCAACCTCTCAAACCTGTCTCAAAAACTTGTCCTCATACCCAGGCAGGCCATCTGTTTCCCCAACAGAGCGTTTCCATCAGCCGAAAGAAGCTGGGGTCCTCTCTCCTCCGCTGACCTCTGTAGCCCCAATGGAGAACCCTACATTACCTTCAGACACCCCTGCTCATGATGCCAACTCGGGTGATTTGCGCAAAATCCTCACAAAGCCTAGAACTGTCCCAGTGTTGGAAATCGGTGCCTCTTCTGGAAATGTGCACGCCCATACTTTAAGAGAAAGTGACACTACACCTGATGTGGTGACCACCAGCAAGAGTGCTCCTCAAGATAACAGGCAACCCCTTGTTTCAGCCCAACCTATAGTTCGACAGCCTGCTTCTATACCATCCCCAGAAACTAAACAGATCTTCAGTGAGAAGTCAGTGATTTCAGTTATTGCTTCTACTCCTACCTCTGTCATCAGTCGTGTTTGCAATCCCCCAGACTCAGAGGAGAAGCCAAACTCTCAGATTGGTAATCCCTTTCTTGACAAACAACCACCAAAACAGATTTACCAGCCAAGCTTGGAGGAAAGCAGTACGTACCATGGTCCAGCCGTTGGTGAGGAAGGTGGAAATGCAGGTCGCTATATAGTGGAGAGCACGTCTTTGAGTACAGGTTCTAGCACAGGTTTGAGAGTTCAGACATCTGAAGGTGTGGTGGTGCTGAGTCATTCTGGCCAGAAAATGGAGGGACCACTTCGCATAAGTGCCAAAATCAGTCAGATCCCACCTGCCAGTGCTGTGGACATAGAGTCACAGCAGCTGGTGTCAATGCCACAGATCAAGCAGGAACTTTACAGTGCCTCCCAGCCGCCGTCTTCCAAATGCCCACTTCCTTCTGATCATGGGCATTCAATGAAACCCCAACCAAACATCTCCACGATTAAGCAGGAATCTGCACTGGAGAAGTTAGAGTCTGCCTACGCTCCGGTTCAAAGTGGAGTTGTTAAAATACTGCAGCAGACACCTGGCCCTTCACAGGTTATGAGTTACCATCCTACAGAATACTCAATGGTGATGAAGCACCCTTAAAAGGGAGATCCGCCAGAGTCTCTAAATGTGGAGAAACCCGCTTGGGTCCCAACTATTAGTCCGGCTATAAGTCCACATCTTCCCTCGGCAGGCAATCATGTTGGCTTCATAACTGGCACGCCGACAGACCGAACGCCATCACTCATACAGCCCAAGCAGGAGCCGCGCTCTCCACGGAAATCCGGACATCCTCATTCTCCTTTTGCTAAAGTGTCATCTCCTATCGGCTCTTCGTCTCCGAAAGGTGTGTCTATGGTCCTTCCCCCTGGATTGCCCCCTCTGTCCCAGTATGTTTCCACCGTCCACCACTCGGAGCAGTCAGTGATCATGCCTCCACACAACGCTCATGGTAGCATCGGAAGGATGTCTCCTCACCGTGTCGGCGCAATAGGACACCTTACCCAGGGTGAGGTACGAGTGAACACTCCTCCTCTCTCTATGATGAACTATGGCATTCATTCAGAGAGCCTCGCCTCGACGTGGGCCCCTGGCCAGCAGAGACCTACTTCTCCTCAGGCTGTGGGAAACAGGGAGATGGTCCTCAAGGTGAACCCGGCCAATGCAAGACCGCCGGCTGCTCAACTCAAACCAGACTCCATACCAGCAGAATACCGTGGAGCACTGCACAGCGCGTTACCTCTGGACCGGTTCAACAGAGACATGCGAGTGCTCATGCACCACCAGCAGAGTGATCGACCCACTGCAGAGTTGCACCCGGGTCACGTCCCCGAGAACATACCGCCCTCCTCGACTCCTACCAGCATGGCGGCCTCTCTTTCGCCTCGCCCGCACTTGTTAGCAAAGGGAGTATCAGAGAAGGACTCCTCGAAAGCGTCAGAACTAAAGAGGGCGCAGTCACCTTCCAGTAAGGAAGGATTGATGGCGATCCGTGGTGCAATGCCTCCCATGGCTTCTCCTCAGAGAGTTCAGCTGATTTCAGCAGGAACTGCAGCTTCCTTCACTGAATATTCAACCATGTATACAAACCTACGACCTGCCCACGCTCAGTTTGCGGAGAATTCTCCAATGGGGATTAACCAGTCTGCCCACAGCATCCCACCCTCGCAGGGTGTTCAGGAGACAGAGTCAAGTCAGGCACAAGCAGAGTCTAAGGAGCTGGTTGGACACCAGCCTGTGAACATGGTACAGCTTCTGACGaaATACCCTATTGTGTGGCAAGGCCTGCTGGCACTGAAGAACGATACGGCAGCGGTTCAGCTGCACTTCTTATGTGGAAACAAAGCTCTGGGCCTGCGCTCCTTGCCTCTGCCCGAGAGCGGAGGGATTCTGCGCATCGTTCAGAGGATGAGGCTGGAGGCGCAGCAGCTGGAGGGAGTCGCTCGCAGGATGACGGGGGAGAGTGACTTCTGTCTGCTGCTGGCCATGCCGTGTGGTCTGGACCAGGAGGATGTGTTAAACCAGACGCAGGCGCTCAAATCTGCCTTCATCAATTACCTGCAGACCAAACTAGCGGCCGGCATCATCAACGTACCCAACCCCGGCTCCAACCAGCCTGCGTACGTGCTGCAGATCTTCCCTCCGTGCGAGTTCTCTGAGAGTCACCTGTCTCGTCTCGCTCCGGACCTCCTGAGCCAGATCTCCAGCATCTCTCCTCACCTCATGATCGTCATCACCTCCGTCTGATCCGCCTTCTGTACAGTCTGCagtctttatatttattgatcGGGTTCATTCTTAttcatgggggaaaaaaaaggcgACTTTCTCTCTTCATTTGCTGATTTTGAGTCTATTTTTTGATGAACGAATCATAGAAGTTATTGTAAGATAAATGCGTGTTTTTAACGTGGATCGCCGGAGATGGCTCCCGTCGACCGGCGACAGGAGAACTGGATCATGGAGCTTCTGCTCTGCCggactgtaaatattttaaatatttaaacattggCCAGACGACCCAAACCCGCCGGAGCGGCGTCACCTTCAGCTGCGGACTCGACTCGATCCGAGAGACCAGCTGTGTTTGTGATGATGTAAATACTCCCGAGGCTCCTCGCTGGGTTTGATGTGGGCACTTCAAATTTTcttactcaaataaaaaaaaagtccataaaA

Function

GO: NA

KEGG:

id description
K25100 SPEN; Msx2-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218836 lncRNA downstream 14528 479495 ~ 480720 (-) True G148091
TU218826 lncRNA downstream 21702 472876 ~ 473546 (-) True G148081
TU218848 lncRNA downstream 41448 452244 ~ 453800 (-) True G148099
TU218840 lncRNA downstream 52580 441728 ~ 442668 (-) True G148095
TU218808 lncRNA downstream 70852 387596 ~ 424396 (-) True G148067
TU218892 lncRNA upstream 160137 674976 ~ 679897 (-) True G148119
TU218890 lncRNA upstream 161859 676698 ~ 679897 (-) False G148119
TU218886 lncRNA upstream 161898 676737 ~ 679897 (-) False G148119
TU218883 lncRNA upstream 163800 678639 ~ 679897 (-) False G148119
TU218885 lncRNA upstream 163800 678639 ~ 679897 (-) False G148119
XM_043223725.1 mRNA downstream 23123 469445 ~ 472125 (-) True ndufaf3
XM_043223670.1 mRNA downstream 35778 453851 ~ 459470 (-) True LOC122327957
XM_043223749.1 mRNA downstream 47240 445497 ~ 448008 (-) True LOC122328026
XM_043223459.1 mRNA downstream 370981 122594 ~ 124267 (-) True LOC122327827
XM_043223822.1 mRNA upstream 854 515693 ~ 524814 (-) True fblim1
XM_043223689.1 mRNA upstream 13008 527847 ~ 531207 (-) True slc25a34
XM_043223615.1 mRNA upstream 18624 533463 ~ 540001 (-) False fbxo42
XM_043223617.1 mRNA upstream 18624 533463 ~ 539970 (-) False fbxo42
XM_043223616.1 mRNA upstream 18624 533463 ~ 539962 (-) True fbxo42
TU218764 other downstream 62649 354912 ~ 432599 (-) True G148042
TU218776 other downstream 101541 283805 ~ 393707 (-) False G148043
TU218805 other downstream 118755 375270 ~ 376493 (-) True LOC122328030
TU218765 other downstream 139733 282399 ~ 355515 (-) False G148043
TU218830 other upstream 75222 590061 ~ 592136 (-) False tmem240b
TU218879 other upstream 152665 667504 ~ 671420 (-) True G148116
TU218891 other upstream 160955 675794 ~ 679897 (-) False G148119
TU218899 other upstream 269024 783863 ~ 788153 (-) False srsf3b
TU218900 other upstream 269024 783863 ~ 788153 (-) True srsf3b

Expression Profile