RNA id: XM_043223583.1


Basic Information

Item Value
RNA id XM_043223583.1
length 5168
RNA type mRNA
GC content 0.40
exon number 18
gene id LOC122327910
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 1699898 ~ 1798685 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAAGTCTTCCCAGTCTGCATGAAACGTCACAGATTGTCGTCCATTGCTGCTGCACGAgtcctcatatatatatatatatattcctttgtGTTATCCATGTACATAACAAATGAGGACTTAAGGGCAAGAATTATCGCAGTCTGTCTTTCATTCGACATAACGCAGAAAACACACTTCATATTTCTGCGCTGATTCACGGGATCTGTTGTAAACCGGACATCTTCTCTCTTATCAGGAGACACGCAGCTCTGGAGAAGATCACGCAGATGTGTGTTTAACAGCGATCACAAGCCGAAAGTGCTTTAAAGACTTCCTTATCTGTTTCTACAGAACAACATTTACACAACGACTTCAAGTACGTTTGAAAAATTATGGAAAATTATGAACGGATTTCATAGATATATGAAGCGAGACAGAGACACAGGGTCTTGTTCAGGACATGAGGAACATCTGATGATCTTCAGAGACACAAAGATctcagagaagagaagaaaaagatgaGTCTCTCAAAGAAACAGAGTGTAAGATCAGACTCACATGTGTCTGTGAAGAGTGACTGGTCAAAGGATGACGTGCCGAACTTCAGTGAAGAACCATCACGAACCAAACAggtTCATTATGAAACATTAGATGCAGATTTACAAACTAACAGGAACCgcaaaaatattacagacaATCTCCTGCAGATCTTCCAggatcttgaaagcaaaataataacatttttaaagaaagaactgaaaacctttaaaaaaatactacaaaaagaGGACATGCAAAACTTTGTGAAGGATTTTAATGAGAACAGAAGCAGTAACAGAGAAGCAGCTCTTGATCTTACGCTTTACTTCCTGAGAGAGATGAAGCAAGATGAAGCTGCTGATACTCTAGAAGaTGAGCTGTTCTTCATTCATCAGCTAAAGTGTAGCCTAAAGAAGAagtataagtgtgtgtttgaaggaATCACAAAGCAAGGAGACTCTACACTTCTGAAGAACATCTACACTGATCTCTATATCACTCAGGGTTGTAGTGAACAAGTCAATACTGAACATGAGGTCAGACAGATTGAAGTTGCTTCTAGGCGTCATGAATCACAAGACATACAGGTTGAGTGCAAAAATTTGTTTGAAGCATCTGAACAAGACGAGCAGATCAGAACTGTTCTGACAAAAGGAGTCGCTGGCATCGGAAAAtcagtctctgtgcagaagtttgTTCTGGATTGGGCcgaaggaaaagaaaatcaagATATCAGCTTCATATTTCCTcttccattcagagagatgaacttaaaggagaaagaaaaactaagTTTGATGGACCTTTTAGCTCAGTTTTTCCCAGAGACAAAAGGACTGAATCTTACGAGAAGAAATCAGTTCAAAGTCCTGTTCATTCTTGATGGATTAGATGAATGTCGACTTCCTCTAAACTTTAAGGATAATGAGATATTGTGTGATGTTTCATCAGCAGCCTCTCTGGATGTTCTCCTAACAAACCTCATCAAGGGAAATCTGCTTccttctgctctcatctggatcaccacCAGACCAGCAGCTGCCAGTAAGATTCCTCCTGAATGTATCAAGCTGCTGACAGCGATACGAGGATTCAATGATGCACAAAAGGAGGAGTACTTCAGAAAAAGATTCACGGATCAGAATCAGGCCAAAGAAATCATCGATCATGTTAAACATTCAAAGAGTCTTTTtatcatgtgccacatcccagtcttctgctggatttCAGCCACAGTTctccagaacattttagaagagaaaagaaaaaatgtgttgaaaaaTAATGAGTCTGAAGATGCCTCCAAAACACTACAGGAGTCAAATACTGAAGACACTCCTAAGACTCTGacacaaatgtacacacactttcTTAGATTTCAGATCCAGCAGAGCAGAAGAAAGTATGATGGAGAACACACACCAGATGTTTCATGGGATAAAGATGCCATCTTTTCACTGGGAAAACTGGCATTTGATCAGCTGGAAAGAAACAATGTGGTCTTCTATGACACAGATCTGGAAGCCTGTGGTATTGACGTCTATAAGGCATCAGTGTACTCAGGCATGTGTACCCAGATCTTTAAGGAGGAAACAGGGATCGTTCTTGGTACCATGTACTGCTTCGTTCATTTGAGCATTCAGGAATTTATTGCAGCCCTTTATGCTCATCGCTTTCTAGAAATCAACAAGAAAAGTGTGTTTGATCAAGACTCAGAACAGGCAAACAAAAGTGAAATTGATTTCCTCAAGACTGCAGTGGACAAGGCTCTAGAGAGTGATAATGGACACATGGATCTATTTCTTCGATTCCTCCTTGGTTTGTCACTCCagtccaatcagagactcttacGGGGTCTGTTGACACAGCAGAATAGAAATGACCAGATCAAAAAGGAAATAGTTGAGTACATCAAGCAGAAATTAGAGGATAATCTGTCTCCAGAGAGATCCATCAATCTGTTCtactgtctgaatgaactgaaCGACCAAACTCTGGTGAAAGAGATTCAGACCCACCTTAACAAAGGAAGTCTCTCATCTGCTGACCTTTCACCTGCCCAGTGGTCTGCTTTGGTCTTTGTGTTGTTGACATcagaggaggagctggaggagtttGATCTTCAGAAATTCAAGGAATCAGACGAGTGTCTCATTAGGTTATCAGCAGTCATCAAAACCTCCAAAAGAGCTCTGCTAAGTGATTGTGGTTTAACAGACAAAAGCTGTTCAGCTCTGGCTTCAGTTCTTGGATCAGATTCCAGTCTGAAAGAGCTgaacatgaacaataataatctgcgggattcaggagtgaagctgctctgcaCTGGACTGAAGGATATCAATTGTAAATTAGAGATACTGAGGTTAAGCAGCTGTGGTTTGACAGAAGAAGGTTGTTCTGCTctgacttcagctctgaaatcaaacccatcacacctgagagaactggaccTGAGCGGGAATGAACTCGGAGACTCTGGAGTGAAACACCTCAGTGATCTACTGAAGAACACACAATTCAAGCTGGAGAAACTACAtctgtgtggatgcagtattacagagaaacagagtctcatcctgacttcagctctgaaatcaaacccatcacacctgagagaactgaacCTGAGCGGGAATAAACTCAGAGACTCTGGAGTGAAACACCTCAGTGatctactgatgaacacacaattcAAGCTGGAGAAACTAGAtctgtctgaatgcagtattacagagaaacagagtctcatcctgacttcagctctgaaatcaaacccatcacacctgagagaactggaccTGAGCGAGAATGAACTCAGAGACTCTGGAGTGAAACACCTCAGTGatctactgatgaacacacaattcAAGCTGGAGAAACTAGAGTTAAGCAGCTGTGGTTTGACAGAAGAAGGTTGTTCTGCTGtgacttcagctctgaaatcaaacccatcacacctgagagaactggaccTGAGCGGGAATGAACTCAGAGACTCTGGAGTGAAACACCTCAGTGatctactgatgaacacacaattcAAGCTGGAGAAACTAGAtctgtgtggatgcagtattacagagaaacagagtctcatcctgacttcagctctgaaatcaaacccatcacacctgagagaactggaccTGAGCTGGAATGAACTCAGAGACTCTGGAGTGAAACACCTCAGTGatctactgatgaacacacaattcAAGCTGGAGAAACTACAGTTAAGCAGCTGTGGTTTGACAGAAGAAGGTTGTTCTGCTctgacttcagctctgaaatcaaacccatcacacctgagagaactggaccTGAGCTGGAATCAactgatgaacacacaattcAAGCTGGAGAAACTACAtctgtgtggatgcagtattacagagaaacagagtctcatcctgacttcagctctgaaatcaaacccatcacacctgagagaactgaacCTGAGCTGGAATGAACTCAGAGACTCTGGAGTGAAACACCTCAGTGatctactgatgaacacacaattcAAGCTGGAGAAACTACAtctgtgtggatgcagtattacagagaaacagagtctcatcctgacttcagctctgaaatcaaacccatcacacctgagagaactgaacCTGAGCTGGAATAAACTCAGAGACTCTGGAGTGAAACACCTCAGTGatctactgatgaacacacaattcAAGCTGAAGAAACTACAtctgTGTAGATGCAGtattacagagaaacagagtctcatcctgacttcagctctgaaatcaaacccatcacacctgagagaactgaacCTGAGCAGGAATGAACTCAGAGACTCTGGAGTGAAACACCTCAGTGatctactgatgaacacacaattcAAGCTGGAGAAACTACATCTTTATGACTGTGGCATTACAGATGTTTCTTCTTTAACTCAGTGtttgacaaaaacagaaacactgcaGTTTCTAAAAGAGCTTGATCTGAGTTTTAATGAGATCAGAGACTCAAAGCAGCAGCTCATTGATGTGCTACGAGACTCAAACTGTAAACTGAGAGTTTAGAGATCCATCATTAGAAGTATATAGAAGAAGATTTCAATCTTCAATTGAGGATAAATGCTGTATATCACAGTTTGAGATCATCTTGAGAGGAGCAGTAAACATCAGATGAAGATCCACAGAAGAACTTCACTATGTGTCTATGAGgagaaataaatgtgtgataaatgtttaaatatgattCATACAGGTGAAGAGACTCAGACTTTACAATCAAATAATGCAGCATGTGTGTTAGAAACATGATATTGAAtgattaatattgatttaatatttaccCTAATGATCATGTTTCAATTAAAGCTAATCAGAGGAAGAAGCTCAGATGAGTCTGACTTATTTGTATTAAACCCATTCATAATGATCagtataataatgaatatgtataaaaaagcaattattatGAAGTTAgatttgtgtctgtctgtttttattaatcataaatCCTCTCTTTACAATAAACAAAGCAGAAACACCATGTAAATAAAAGCTGGATTGTGGAGTTTGTGTTGAACTGATGAGTTataatgatgaataaaatgaataaaactgatgaataaaaatgagttaTGTAGGGGAAAAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219749 lncRNA downstream 13939 1638839 ~ 1685959 (-) True G148611
TU219731 lncRNA downstream 73991 1580358 ~ 1625907 (-) False LOC122327995
XR_006247752.1 lncRNA downstream 103719 1587528 ~ 1596179 (-) True LOC122328037
TU219722 lncRNA downstream 135932 1562575 ~ 1563966 (-) False G148594
TU219723 lncRNA downstream 135932 1562575 ~ 1563966 (-) True G148594
TU219772 lncRNA upstream 9481 1808166 ~ 1905132 (-) False G148630
TU219774 lncRNA upstream 9481 1808166 ~ 1905929 (-) True G148630
TU219783 lncRNA upstream 10380 1809065 ~ 1907053 (-) False G148632
TU219790 lncRNA upstream 10380 1809065 ~ 1907747 (-) True G148632
TU219788 lncRNA upstream 10816 1809501 ~ 1907747 (-) False G148632
XM_043223606.1 mRNA downstream 89645 1570476 ~ 1610253 (-) False LOC122327919
XM_043223719.1 mRNA downstream 115354 1583015 ~ 1584544 (-) True LOC122327997
XM_043223717.1 mRNA downstream 117481 1580290 ~ 1582417 (-) True LOC122327995
XM_043223607.1 mRNA downstream 124988 1570476 ~ 1574910 (-) False LOC122327919
XM_043223709.1 mRNA downstream 272596 1423876 ~ 1427302 (-) True LOC122327988
XM_043223608.1 mRNA upstream 116707 1915392 ~ 1928706 (-) True ampd2a
XM_043223833.1 mRNA upstream 161151 1959836 ~ 1963227 (-) True LOC122328124
XM_043223812.1 mRNA upstream 314096 2112781 ~ 2114243 (-) True LOC122328100
XM_043223714.1 mRNA upstream 321904 2120589 ~ 2123969 (-) True LOC122327992
XM_043222262.1 mRNA upstream 325905 2124590 ~ 2128965 (-) True aqp12
TU219752 other downstream 35271 1661185 ~ 1664627 (-) True G148613
TU219689 other downstream 45558 1643710 ~ 1654340 (-) True G148574
TU219728 other downstream 85360 1583744 ~ 1614538 (-) False LOC122327997
TU219681 other downstream 236722 1461873 ~ 1463176 (-) True G148573
unassigned_transcript_2536 other downstream 266383 1433445 ~ 1433515 (-) True trnag-gcc_102
TU219884 other upstream 315653 2114338 ~ 2116183 (-) False LOC122328032
unassigned_transcript_2537 other upstream 329177 2127862 ~ 2127935 (-) True trnai-aau_113
unassigned_transcript_2539 other upstream 331938 2130623 ~ 2130696 (-) True trnai-aau_114
unassigned_transcript_2540 other upstream 332202 2130887 ~ 2130958 (-) True trnad-guc_17
unassigned_transcript_2541 other upstream 332528 2131213 ~ 2131283 (-) True trnag-gcc_103

Expression Profile