RNA id: XM_043223590.1


Basic Information

Item Value
RNA id XM_043223590.1
length 3702
RNA type mRNA
GC content 0.59
exon number 23
gene id lamb3
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 1000531 ~ 1011607 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

caggtgagcgGCTCCTGAGATAaaagccaaacacacacatcacacactgAAGGACTTTACGGTAAACTCCTGTTAACCTGGACTGAACTCATTCAGCTGCGTTTCAGAGGAAGCTCAGCTCCGCTTGTGTTTTATTCGTTTAGATCCATATACTGTCCGGATGAAGAGCTGGATTTTTCTTTCACTAGCAGCTCTGTCTGTGGTGTGTGGGGCTCAGCACGACTGCTGGAGCGGAGCCTGTTACCCCCCGATGGGCGATCTCCTGCTGGGACGAGAGCACACGCTGcgctcctcctccacctgtgGTCTGACGGGGTCCGAGGTGGTCTGCACTCCTCACGGACAGTGGAAGATGAAGTGCTGTCCGTGTGACTCTCGTAACCCGGCGGCGTATAACGCGCACACCGTCCAGAACGTGATCTCCAGCGCCGGACCCAACCGATGGTGGCAGTCCAAGAAAGATGTGAGTCCCGTGACGCTGCAGCTGGATTTAGACGGAGTGTATCACCTGGAGACCGTCTTGCTCTCTTTCAAGGGCCCGAGGCCTGACGGGCTGATCGTCGAGAGGACGAGGGATTTCGGTGTGCCTTGGCAACCCGTCCTGTACATGGCCACCGACTGCCCGTCCACCTTTCCTCGGGTGAGCACGTCGTTCCCTCGAACCCTCGAAGAAACCTACTGCTACGCGCTGCCGTCCACCGCCGACGACCCCTACAGGGACCAGAAGATTCACTTTTATCCTCTGCGTCAGTTTGCCGACGTCGACCTGCCGAACGAATACAAAATCGAAGTGGCGTCTGGGTTCACGGGTCTGAGGGTCAACCTGACTCAGCTGGGGTCGGTTCCCAGCATGCCCGGCCGCGCTCTGAGCCAGTTCTACGCCCTGAGAGAGATGAGGGTGATCGGATCCTGCTTCTGCCACGGACACGCCAACCGCTGCAACGAGCTGCCCAACACACAgGTGGgcggtgtgtgtgagtgtcagcACAACACAGCGGGTGTGAACTGTGAGCGATGTGAAGACCTCCACAATGACCTTCCCTGGAGACCGGCGGAGAacggaaacacacacacctgcaaacGCTGTGAGTGTAATAATCACGCGGGTCGCTGTCACTTCGACGCGCGGCGTTACGAGGCGACGGGGCGCAGGAGCGGAGGAGTGTGTGACGACTGCACTCATCACACCACCGGAGACAACTGTGAGCGCTGCGCTAACAACTACTACAGAAACCCTCTGAGCGACATCAGGAGCCCCGACGCCTGCCTGCgCTGTCTGTGTAACGCGGCTGGCTCTGTGAGCGGCGGTCAGTGTGACGGTCAGAccggagcgtgtgtgtgtaaagctAACGTTGAAGGCGATCGCTGCGACCGGTGCAAAGCTGGATACTACAACCTCAACCCCAACAACCCTCTCGGCTGCTCCAagtgctCCTGCAGTCCAGACGGCTCTGGCAGCGGTGTGTGTGATCAGCTGACGGGTCAGTGCGAGTGTCGCCCTCATGTGGAGGGTCTGTCGTGTGACCGCTGTGCTGCAGGTTACTGGAACCCGTCCTCGCCCTACGGCTGCCAGCCCTGTGACTGTGACCCGGTTAACTCCCGCAGCGCCGCCTGCGACCAGCGCACGGGTCAGTGTCCGTGTCGCCCGGGCATCGGGGGCCGGACCTGCGGCGGTTGCCCTGACAACACATACGGAAatcctctgattggctgcagaCGGTGTGACTGTGACCCGTCGGGCACGGAGCCGGGCGGCTGTGATAAACGCAGCGGCGCGTGTCTCTGTAAACCGGGCGTAACCGGAGCCCGCTGCGACGCCTGCAGCCGAGGCCACTGCGCCAGTTTCCCAGAATGCCCGGCGTGCCCGTCCTGCTTCTTCGACCTGAACGGGCGCCTGCAGCAGCTCACGCTGACCCTGGAGCGGCTCTCCTACCAGCCGATCCCGTCCGGCGGGAGTCCGGCCTCCAGCGACGCCAGCCGCAGGATCCGCTCGCTGATGGACACCCTGAGACGCCTGCAGGAGGCCGTGAGCGTCCCGCCAGAGTCCAGCCGAGCGCTGACCGACGCGCTGCAGAGACTCGACCAGATCAGGTCTCAGCTAAACGGTTTAACTGAGGATTTGGCATCCCAGCCAAGGGACAGCGATATTGAGCGCAATCTGGATGACCTGCAGGAGCTTCTGTCGTCTCTGCGTCTGGAATACTTCAGGAAGAGAGATGGTTTCACCAACACCGCCGGATCCAACAACGCCAGCACCTTCTACGCCATCCAGAAGTCGTACGAAAAGTCGACAGACGCCGTCAAACGAGCCGACGCTGCTAAAGACAGCCTGAAGAAGTCTGAGGGCCTTCGAGAAAACGCCCTGAGCGACCTGAAAAACGTGCAGCCCGGAAACACCAGAGACCTGGAGAAACTCACGAAGGATCTGGCAACCCGGCCTAATCTGACACCCACAGCGAACAAGGTGTGCGGCAGCAAGCGCGTAGATTCCTGTACTCCGGAGAACTGCCCCGGAGATCTGTGTCCTCCTGACGGAGCGCCCCCGTGTGGACCGGAGGAGTCCTGCGCCGGAGCACTGCCCAACGCTAATAAAGCCTTTCGGGACGCAGATGAGGTGAAGGCCAAACTACAGGATCTGAACAACAAGATCACGCAAGCTGCTGCCCAGATACAGGAAGCTGAAGACTCGGTCACTAGGGTGAGACTGTCCACAGACGAGCTGGCCAATCAGATCCAGCAGGTGCAAGCCGACGTGGATGAAGACCTGAAGGACACCAAAGACTTCATAAACAATCTCAGGGACTTCCTGTCAGAGCCTCATTCAGACCCTGATGAGGTGCAGCGGGTGTGTGAGGCTGTTCTGGATGCTCAGGTTCCTTTGAGTGTGGAGAAGCTGAAGCAGAAGCTAAAGGAGCTGCAGGATCTGGCATCTTCACTGCCCGACAGCAGCAGAGTCCTGGAGAACAGCAGAGAGCAGCTGGAGAACGCCAGACAGCTGCTGGAAGACGCTAACAGCACACGAGACTCTGCGTTCGGTATCCAGCAGGACGCTGAGAGCATCCTCAAGACGATGGACGACAACGAGGATATTTTCGATGAGCTGAAAGACAAAATCTATCAGATCACCAACATCACAAACAACGTCAAAGACGACGTCAAACAGATAGAGGACGCGCTGCTGCCCGCTGAGCAGGGGATTGTGGGAGTCACAGGGCTGCTGGATGAGATGCGCCCCCTGCTGGACGACCTGAGAAAGGACACAACCACGGGAAGAACGCATGCCAGCGAAGCTCAGGATCAGGCCGATTCCGCTCAAGACGAGGCCGAACAGGCGGCAGAGGAGCTGGAAGAGCTGAAGGAGGAGCTTGAGCGACTGAAGAGAGCAGCGGCTGAGAACACCGAGGCAGGAGAAGACTCCGCCCACTTACGGGCGCTGCAGAAGGAGGCGGAGTCTCTGATGACGGACACCAGCGACATCATGCAGGCTCTGAAAGATAAAGAGGAGTCTGTTCGTCTGGGAGCGGCGGAGCTGCAGCAGAACGCAGCAATACTGAGCGGTCTGGACGATCAAGTGAAGAAACTCCGAGACGACATCCGCTATAAAGTCACCAGCCTGAACATATGCCAGGGCTGAGGAGCACAACACTCTCCCGAAACAACACTAAGAGCAAAACCACTAATAAAGTGAAGCGTCTGCACGAA

Function

GO: NA

KEGG:

id description
K06244 LAMB3; laminin, beta 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247761.1 lncRNA downstream 27087 972557 ~ 973444 (-) True LOC122328046
TU218997 lncRNA downstream 28388 970948 ~ 972143 (-) True G148198
TU218994 lncRNA downstream 31743 967876 ~ 968788 (-) True G148195
TU218992 lncRNA downstream 39628 960629 ~ 960903 (-) False LOC122328005
TU218971 lncRNA downstream 93002 906493 ~ 907529 (-) True G148180
TU219450 lncRNA upstream 6924 1018531 ~ 1019039 (-) True G148477
TU219474 lncRNA upstream 45580 1057187 ~ 1057397 (-) True G148492
TU219475 lncRNA upstream 93770 1105377 ~ 1111286 (-) True G148493
TU219501 lncRNA upstream 127404 1139011 ~ 1139427 (-) True G148505
TU219505 lncRNA upstream 134900 1146507 ~ 1147221 (-) True G148509
XM_043223727.1 mRNA downstream 39645 959690 ~ 960886 (-) True LOC122328005
XM_043223577.1 mRNA downstream 41450 941317 ~ 959081 (-) True cacna1sa
XM_043223684.1 mRNA downstream 59509 936431 ~ 941022 (-) True kctd20
XM_043223642.1 mRNA downstream 74906 918418 ~ 925625 (-) False cept1b
XM_043223599.1 mRNA upstream 11141 1022748 ~ 1030444 (-) True LOC122327917
XM_043223601.1 mRNA upstream 11141 1022748 ~ 1028938 (-) False LOC122327917
XM_043223824.1 mRNA upstream 27220 1038827 ~ 1048237 (-) True LOC122328113
XM_043223828.1 mRNA upstream 129951 1141558 ~ 1152393 (-) True LOC122328117
XM_043223709.1 mRNA upstream 412269 1423876 ~ 1427302 (-) True LOC122327988
TU218822 other downstream 167156 831975 ~ 833375 (-) False arl8a
TU218899 other downstream 212378 783863 ~ 788153 (-) False srsf3b
TU218900 other downstream 212378 783863 ~ 788153 (-) True srsf3b
TU218901 other downstream 212378 783863 ~ 788153 (-) False srsf3b
TU218891 other downstream 320634 675794 ~ 679897 (-) False G148119
unassigned_transcript_2535 other upstream 421250 1432857 ~ 1432930 (-) True trnai-aau_112
unassigned_transcript_2536 other upstream 421838 1433445 ~ 1433515 (-) True trnag-gcc_102
TU219681 other upstream 450266 1461873 ~ 1463176 (-) True G148573
TU219728 other upstream 572137 1583744 ~ 1614538 (-) False LOC122327997
TU219689 other upstream 632103 1643710 ~ 1654340 (-) True G148574

Expression Profile