RNA id: XM_043223615.1


Basic Information

Item Value
RNA id XM_043223615.1
length 2412
RNA type mRNA
GC content 0.63
exon number 10
gene id fbxo42
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 533463 ~ 540001 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acgtgtgtgcgtgcgcgctcCCGAGCGGAGGGAAGATGGCGGATGTTTGGAGTGAGGAGCTTCATGAGAGCAGCTGataaagagaaacacaaacaaacaacagcgGAGAAGAAGAAGCAGCGCGCCGGCCAGAGACGGACCGAGACACCGGCAGACAGATCCGCAGACGGAGTCATGTCTGGCTGCGCAGACGGCGAGGACAGCTGCTCGGTTGCCATGGAGACGGAGGAGGTGAAGCCGGGCGAGCGCAGCATGGACGAGCTCCCTGAGGAGGTGCTGGAGTACATCCTCTCGTTCCTCTCGCCCTACCAGGAGCACAAGACGGCCGCGCTGGTCTGCAAGCAGTGGTACCGCCTCATCAAAGgtgtggCGTATCAGTGTTATCATGGTTTCCTGAGGGCTGTTCAGGAGGGAAACATCCAGTGGGAGAGTCGCACATATCCGTATCCAGGAACACCGATAACACAGCGCTTCTCACACAgcgCGTGTTACTACGACTCGAACCAGTCGATGTACGTGTTCGGCGGCTGTACACAGAGCAGCTGTAACGCAGCGTTTAACGATCTGTGGCGTCTGGATCTCAACAGTAAGGAGTGGATCCGGCCGCTGGCGTCAgGCTCGTATCCGTCTCCGAAGGCCGGAGCGACGCTGGTGATGTTCAGGGATCTGCTGGTGCTGTTCGGCGGCTGGACACGGCCCAGTCCATACCCTCTCCACCAGCCTGAGCGCTTCTTCGACGAGATACACACCTACTCACCCTCCAAGAACTGGTGGAACTGCATCGTGACGACTCACGGGCCGCCTCCGATGGCGGGACACTCGTCCTCGGTGATCGGCAGCACTATGGTGGTGTTCGGAGGCTCCCTGGGCGCGCGGCAGATGAGCAACGAGGTCTGGGTCCTGGATCTGGAGCAGTGGTCCTGGTCCAAGCCGGCCGTCAGCGGCCCGTCCCCTCATCCTCGTGGAGGACAGTCTCAGATCGTGATCGACAGCGAGACGCTGCTGATTCTGGGCGGCTGCGGCGGACCGAACGCTctGCTGAAGGATGCCTGGCTGCTGCACATGAGCGCCTCCCCCTGGACGTGGCAGCAGCTGCGGGTGGAGAACGAGGATCACGGCGCGCCGGAGCTCTGGTGCCATCCGGCCTGCAAGGTGGGTCAGTGTGTGGTGGTGTTCTCTCAGGCACCGTCGGGGCGGGCCCCTCTCAGCCCCAGTCTGAACTCTCGGCCCTCGCCCATCAGCTCCACGCCGGCCCCCCTGGGCCCGGACCCGCCCTCGCTGCGCTCCCAGTCCCCGGTGCGGGGCGGTGCTGCGGGCGTGGTGCTGGGCGCGGTCGAGGAGGCACCCTGCGTGAACGGCCGCTGGGGGACCCTGCGGCCCCGAGCCTCGGCCCGAGCCTCTCCCTCGCGGGGCCCCGACAGCCCACCGCTGCTCAACGGCTCCTCGCCCTCCACCAGCCCGGTGCAGGCGGCGTCTCCGCCCACGAGACCGCAGGCCGAGTACAGCTGGGACGAGCCGCCCGCTTCCAACGGGCTGCACACGCCTCCAGGGGCCGGGTCCCCGCGCACCCCTCCGGGGGCCGTTTCTCCCGCAGCCCTGCGCCGGGGCCTGGAGGCCGTTAAAGCTTCCTCCTCGCTGCCGTCCTCCTCCTCGCTGGCCCCTCCGGGCGCGTCCTCCGGCTCGTCGCCCTCCTCCTCCAGTCCGCCGCAGGCCGCCGACGCCCCCTCCATCCCCCCCATCGCCCGGCGCCTCGCCCACCACCCGCCCCAGAGCCTGAACGTGGGCAAGCCGCTCTACCAGTCGCTCAACTGCAAGCCCATGCAGATGTACCTGCTGGACATTTCTCGTGCCAAGTCGGGCGGCGTGGTGTCGTGGCGGGCGTACGGCAGCGGCGGGGCTCCCAGCGCCGTCACCGGGCCGCCCGAGACCAGTCTGCACACGGTGGTCCAGGGCCGCGGAGAGCTCATCATCTTCGGAGGCCTGATGGACAAAAAGCAGAACGTCAAATATTACCCCAAAACCAACGCCTTGTACTTCGTCCGCGCCAAGAGGTAATGGAGGACCGGCGACGACCTTACACTAACTTACCTTAAAATACAGCTCGACACATATAAAGGACACTCAAACATAGTTGTGGTTTCAGTTTCTGAGCGAGCGGGGGTGTTTTTCTGTGAGAGAGGACTCCAGAAGGGATTACTGGATGGTTTCTGGATACAGATGATTGTAGGAGGAACTGATGAAATGGACCTTTTTTACCGCTCTTTCGGCCTGCAATGTTTACattaaacgtgtgtgtgttcacgtgtgtgtgtgtgtgagagtgagtgagagagtgagtgtgatgGTGCTGTTGAGGGAATGAGACTGTGGATtgtaaacagaaataaagttcTCCATGTCTTAATTCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU218836 lncRNA downstream 52743 479495 ~ 480720 (-) True G148091
TU218826 lncRNA downstream 59917 472876 ~ 473546 (-) True G148081
TU218848 lncRNA downstream 79663 452244 ~ 453800 (-) True G148099
TU218840 lncRNA downstream 90795 441728 ~ 442668 (-) True G148095
TU218796 lncRNA downstream 112138 396894 ~ 421325 (-) True G148058
TU218892 lncRNA upstream 134975 674976 ~ 679897 (-) True G148119
TU218890 lncRNA upstream 136697 676698 ~ 679897 (-) False G148119
TU218886 lncRNA upstream 136736 676737 ~ 679897 (-) False G148119
TU218883 lncRNA upstream 138638 678639 ~ 679897 (-) False G148119
TU218885 lncRNA upstream 138638 678639 ~ 679897 (-) False G148119
XM_043223689.1 mRNA downstream 2256 527847 ~ 531207 (-) True slc25a34
XM_043223822.1 mRNA downstream 8649 515693 ~ 524814 (-) True fblim1
XM_043223568.1 mRNA downstream 18624 495248 ~ 514839 (-) True si:ch1073-335m2.2
XM_043223725.1 mRNA downstream 61338 469445 ~ 472125 (-) True ndufaf3
XM_043223670.1 mRNA downstream 73993 453851 ~ 459470 (-) True LOC122327957
XM_043223627.1 mRNA upstream 1072 541073 ~ 552244 (-) True atad3
XM_043223738.1 mRNA upstream 12932 552933 ~ 555337 (-) True mrpl20
XM_043223741.1 mRNA upstream 25878 565879 ~ 584661 (-) True LOC122328013
XM_043223705.1 mRNA upstream 46115 586116 ~ 589866 (-) True necap2
XM_043223729.1 mRNA upstream 50026 590027 ~ 593649 (-) True tmem240b
TU218764 other downstream 100864 354912 ~ 432599 (-) True G148042
TU218776 other downstream 139756 283805 ~ 393707 (-) False G148043
TU218805 other downstream 156970 375270 ~ 376493 (-) True LOC122328030
TU218765 other downstream 177948 282399 ~ 355515 (-) False G148043
TU218830 other upstream 50060 590061 ~ 592136 (-) False tmem240b
TU218879 other upstream 127503 667504 ~ 671420 (-) True G148116
TU218891 other upstream 135793 675794 ~ 679897 (-) False G148119
TU218899 other upstream 243862 783863 ~ 788153 (-) False srsf3b
TU218900 other upstream 243862 783863 ~ 788153 (-) True srsf3b

Expression Profile