RNA id: XM_043223757.1


Basic Information

Item Value
RNA id XM_043223757.1
length 1463
RNA type mRNA
GC content 0.42
exon number 14
gene id LOC122328055
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 16241163 ~ 16244542 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATTTCAACATGCCCACAGTGGCGTTGGGGTTGGAGTAAGAGCAGCGATTGGTTGAGACAAGTTACCTTGTGTGTAGtcttcatatataaaaacagtgaCGTTTAAAAAGATAAGCGCAACTGCAACCAAAGGATCATCTGACAGTCTATACAGACTTTGCTCTTAAGATGGCGGCAAATGGAAAACATTGGGTGATGCTTGTAGCGGGTTCAAAGACATGGAGCAATTACCGACACCAGGCTGATGTGTGTCACGCCTATCAGATCATACATCAGAACGGGATTCCTGACGAACAGATTGTGGTCATGATGTATGATGACATCGCCAATAACGATGACAATCCTTATCCTGGGAACATCATTAATAGACCAAACGGACCGAATGTGTATCCAGGCGTCCCAAAAGATTACACCGGAGGGGATGTTACCCCTGAAAACTTCCTGGCTGCTCTTAAAGGAGAGAGACAAAACTCtcagaaaaaagtcatttcaagTGGGGAAAATGACACAATATTCATCTATCTGTCAGATCATGGAAGTCCAGGCATATTTTGCTTTCCTAACAACACCCTTCATGCCAATGATCTCATTGAAACCATCAAGGAAATGGCGAGGAACAAGAAGTTCTCCAAGATGGTGATATATATGGAATCCTGTTTTTCTGCATCAATGTTTACCCAACTCCCAGATAACATTCATGTGTATGCAGTGACTGCAGCGGGAGCAAATGAGAGAAGTTACGCCTGTTACTTCGATCCTGTGAGGAAGACCTATCTCGCCGATGTATTCTCAGCTCTTTGGATGTACTACACTGAAACGaatgatCTCGATAAAGTAACATTCCTGAATCAGTTTAGTTATCTTCAGCAAGCGATGAATACCTCTCACCCCTGCTGTTTTGGGGACATGACAGCTGGTGAGAAACCCATCAGTGAGTTCTTGAGAAACACTCCTCGGTCCATTCAGGAGTCAGCTAAAGCTCAGCAGCTTGTGTTGACTGATTTGACACAGGCCCATGAAGTGCCTTTCAAAATCTTGGAGAATCAAATCAACATAGAAACTGATgaagacagaaaacaagatttgaTCAGAAAACTTGATGCTCTTCATCAGATTAAAGCTAAAATTGAAGGAACAGTGGAAACTATCAAACGGCACTTTCCTGACTTTGCACATGAGGATGAAGATTATTCTCAGATGGATTTACATTCTTTCAAAACCGTAGCTGAACATTTCAGGACAACCTGCTTCGACTGGCACGAGGAAGAGATGGccttgtcacacacacacgtgttcgCTCGTCTCTGTGCTCGTGGAGTTAAAACAGAGAGGATCATAGAGGTCATAACAAAGGTCTCCAGTCTCTAAATAAACAACACCTTTAAGAAGAACTTAAGAAGAAATTTAGATCCATCTCAtccatcaacaaaaaaaagagtcaaaTAAACCATGTGTCGACGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227043 lncRNA upstream 69695 16170893 ~ 16171468 (+) False LOC122327131
TU227040 lncRNA upstream 73042 16163383 ~ 16168121 (+) False LOC122327131
TU227041 lncRNA upstream 76967 16163383 ~ 16164196 (+) False LOC122327131
TU227020 lncRNA upstream 162295 16078273 ~ 16078868 (+) False LOC122327825
TU227009 lncRNA upstream 258341 15982592 ~ 15982822 (+) True G153321
TU227077 lncRNA downstream 5898 16250440 ~ 16250973 (+) True G153364
TU227140 lncRNA downstream 59189 16303731 ~ 16305650 (+) True G153399
TU227176 lncRNA downstream 176110 16420652 ~ 16481470 (+) True G153418
TU227196 lncRNA downstream 257212 16501754 ~ 16502104 (+) True G153434
XR_006247619.1 lncRNA downstream 278088 16522630 ~ 16526785 (+) True LOC122327176
XM_043223165.1 mRNA upstream 4142 16233607 ~ 16237021 (+) True LOC122327679
XM_043222314.1 mRNA upstream 69534 16163389 ~ 16171629 (+) True LOC122327131
XM_043222315.1 mRNA upstream 69534 16163389 ~ 16171629 (+) False LOC122327131
XM_043222437.1 mRNA upstream 85612 16153142 ~ 16155551 (+) True LOC122327230
XM_043222436.1 mRNA upstream 141356 16098731 ~ 16099807 (+) True LOC122327228
XM_043222222.1 mRNA downstream 72845 16317387 ~ 16319378 (+) True rpl32
XM_043223195.1 mRNA downstream 85183 16329725 ~ 16337118 (+) True sec13
XM_043222445.1 mRNA downstream 137643 16382185 ~ 16477611 (+) False grip2b
XM_043222444.1 mRNA downstream 137644 16382186 ~ 16477611 (+) True grip2b
XM_043222472.1 mRNA downstream 356088 16600630 ~ 16746196 (+) False dock3
unassigned_transcript_2576 other upstream 91319 16149772 ~ 16149844 (+) True trnaa-agc_28
unassigned_transcript_2572 other upstream 94026 16147065 ~ 16147137 (+) True trnaa-agc_27
unassigned_transcript_2570 other upstream 95411 16145680 ~ 16145752 (+) True trnaa-agc_26
unassigned_transcript_2563 other upstream 102241 16138850 ~ 16138922 (+) True trnaa-agc_25
unassigned_transcript_2559 other upstream 104971 16136120 ~ 16136192 (+) True trnaa-agc_24
TU227165 other downstream 72919 16317461 ~ 16386176 (+) False rpl32
TU227194 other downstream 249160 16493702 ~ 16499413 (+) True G153432
XR_006247623.1 other downstream 356090 16600632 ~ 16746075 (+) False dock3
TU227461 other downstream 1170911 17415453 ~ 17419233 (+) False tsc22d2
TU227593 other downstream 1681809 17926351 ~ 17927244 (+) True G153741