RNA id: XM_043223760.1


Basic Information

Item Value
RNA id XM_043223760.1
length 1866
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC122328058
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 17516130 ~ 17520426 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACGAGTCAGACATTTTTAAGCTAACGGACTGGACGCAGTGTTGCTGTTTTGTGACGTAATGACGTCCCACAAGCGCCAGCAGAAGCTCTGTAGCTCCACAGGGCACTCCAACAACAAAAGCAGCCATGTCAACGAATGGATCAAAGCCGAATCTCAGCCATTCCCAGGTTTCAGAGCTTATCAAGCGGCTCTATGGCTTGACCGTGTCCGTCGTCCGACCGCTGCCCAGTTATGATGATCAAAACTTTTACGTGGCCCCCAATGAAGGAGGAGAATATGTGTTGAAGGTTATGAACTCAGCAGACAGTCAAAACATCACCGTTATTGAGCTGCAGACTCATGCCATGAACTTCTTACACCAAAGAGGCCTTCCTGCCCAGACCGCTTTTCCCACTCTGACTGGCCGACTCATGAGCCTGGAGGAATTTGATTGTGGGTTTGGCGTGCAGAAATATTTAGTGCGTTTACTTGCCTACCTTCCTGGTACTACTGTAGCCAAAGTTACCTGCGGTCCTCAGATCTTGTATGATGTTGGGAAAATGGCCGCCACATTGGATACAGTTCTACTGCAAATGGAGCATCCAGACATCAGCGTCCTTCAGAGAGAAGGTTTCATATGGAATCTCGCCAGCGTTCGTCTCTTAGACCAGTATATGCATGTGATGGATGGAGATCCCGTGCTAAAGGTTGTTAAAGCCGTTCTGGAGCAGTACCAGATCCACGTCGTGCCAAAACTACCGTTGTTTCGCAAATGCATCAACCACGGAGACTTCAACGACCACAATCTCTTGGTGAAACCCGATGGACCCTCGAAGCACAAGATCTCCGGGATCCTTGATTTTGGAGACATGAGCTGCGGGTATTTCATATTTGAGCTGGCCATCACCATCATGTACATGATGATTGAGAATCCCAGTCCGCTAGACGTCGGAGGGCCGGTGGTGGCGGGATGGGAAAGTGTTTTTCCTCTCAACGAGGCAGAAAGAGACTCGCTCTATTTGCTGGTTCTCTGTCGGTTCTGCCAGTCCCTGGTTCTGGCTCGACACGCGGTGATCCAGCAGCCAGAGAACGAGGAGTACTTGATGATCACCGCCAGGACAGGGGTGCGCCATCTCCGTCGGCTTTGGGAGCTGGGTAAAGAGCAAGTGGAGAGAATATGGTTCCAGAGCGCTGCACAGTTTGGCCAACCTTGACTTCAGCAGCTGCATGCTGAAAAATGATATGCAATAACCATTGAAGATATACTTTTTACCCAAAAATTCATGTTAACGACGTGAAATGATGACAATGTCAAATGGTGTTGATTTGTCTTAAGTCACACAACTTTTGACATTAATTTTAGAGCTTAATGAGTTAATAATTAAGGTAAATTCGGTTTGTTCCTCACAAATCTCTTTGATGGGTCTAAAAGACTATACGACTATGCATACCAACAGTCCagaacaaacattattttagtcTCTCATtccaaaaaaatgcacacacccACTCGCattcaaaaattacattcacaTGTGATATGGATCACTTTTATGATATTTTCATAGTGCTTTTTTCCCAGTAAACCAATGCATCATTTCCAAATTCTCCTATTTTGTTGCCCAGAagagtaaaataacactaatatgGTTGCGACATCTACTGTACATtgatgtcaaaaataaatacttcatttcattaaatacagtatatcCCAAGAATTAATgatgaattatacattttaaaatgtttaacttgCTCAATTCATAGACTACGATTTATTGTATATCATAAAGAGGGAATGTGATGAAAGGTCCCATAAACTTTTATGGGCTGATCTTACAGCACatgtaatgaataaacaaaccgCTGACTGCAGCATTTTA

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0047992 hydroxylysine kinase activity molecular_function

KEGG:

id description
K18201 AGPHD1; hydroxylysine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227477 lncRNA upstream 41530 17473241 ~ 17474600 (+) True G153654
TU227476 lncRNA upstream 43284 17471900 ~ 17472846 (+) True G153653
TU227470 lncRNA upstream 73951 17441873 ~ 17442179 (+) True G153647
TU227465 lncRNA upstream 96186 17419724 ~ 17419944 (+) True G153645
TU227415 lncRNA upstream 443194 17072514 ~ 17072936 (+) True G153610
TU227589 lncRNA downstream 363187 17883613 ~ 17883921 (+) True G153737
TU227592 lncRNA downstream 366220 17886646 ~ 17886876 (+) True G153740
TU227595 lncRNA downstream 419455 17939881 ~ 17940860 (+) True G153743
XM_043223460.1 mRNA upstream 23475 17490744 ~ 17492655 (+) True dynlt2b
XM_043223358.1 mRNA upstream 77216 17422118 ~ 17438914 (+) True rubcn
XM_043223360.1 mRNA upstream 77216 17422119 ~ 17438914 (+) False rubcn
XM_043223359.1 mRNA upstream 77216 17422120 ~ 17438914 (+) False rubcn
XM_043223185.1 mRNA upstream 96886 17399306 ~ 17419244 (+) False tsc22d2
XM_043223106.1 mRNA downstream 176449 17696875 ~ 17741017 (+) True LOC122327646
XM_043223108.1 mRNA downstream 176449 17696875 ~ 17741017 (+) False LOC122327646
XM_043223107.1 mRNA downstream 176449 17696875 ~ 17741017 (+) False LOC122327646
XM_043223110.1 mRNA downstream 176449 17696875 ~ 17741017 (+) False LOC122327646
XM_043223111.1 mRNA downstream 176449 17696875 ~ 17741017 (+) False LOC122327646
TU227461 other upstream 96897 17415453 ~ 17419233 (+) False tsc22d2
XR_006247623.1 other upstream 770055 16600632 ~ 16746075 (+) False dock3
TU227194 other upstream 1016717 16493702 ~ 16499413 (+) True G153432
TU227165 other upstream 1129954 16317461 ~ 16386176 (+) False rpl32
unassigned_transcript_2576 other upstream 1366286 16149772 ~ 16149844 (+) True trnaa-agc_28
TU227593 other downstream 405925 17926351 ~ 17927244 (+) True G153741

Expression Profile