RNA id: XM_043223780.1


Basic Information

Item Value
RNA id XM_043223780.1
length 3240
RNA type mRNA
GC content 0.51
exon number 22
gene id aars2
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12398320 ~ 12408232 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCCGCTGTTTGACGCCGTGACGCGACGGCAAGATGGCTGCGCGCATAGGGCTGGTTAAACATCTCCACTGTTcgcttttaaatgcaaaattaagtGTTATATCTGCGGGTGTGAGGCAGTGCTCGGCCCGGTCCTATTCGAAACCTCATAAAGAATTCACATCTAAAAAAGTACGGCGGAAGTTTATCGACTTTTTCAAGGAAGGTTATGAACACCGGGTTGTGGCGTCCTCCCCCGTGCGTCCGAGAGGAGACCCGAGCCTTCTGTTCGTCAACGCAGGGATGAACCAGTTCAAGCCCGTTCTCCTGGGCTGTCCGGACCCCCGCAGTGAGATGGCGTCGTACCGGCGGGTGGTGAACAGTCAGAAGTGTGTCCGCGCCGGAGGCAAACACAACGACCTGGAGGATGTGGGGAGGGACGTCTACCATCACACCTTCTTCGAGATGCTGGGGAACTGGTCGTTTGGTGACTACTTCAAGGTGGAAGCCTGTGCAATGGCCTGGCGTCTTTTAACGGAAGAGTACGGCATTCCTACAGATCGCTTGTACGTCTCGTACTTCTCTGGAGACGCGGCGAATGGACTCCCCGCCGACGAGGAAACACGGCAAATCTGGCTCAGCATGGGAGTGTGGCCGGACCACGTGTTGCCGTTCGGAATGAAGGATAACTTCTGGGAGATGGGAGAGACGGGCCCGTGTGGCCCCTGCACAGAGGTACACTACGATCACGTCGGGCAGCGAAACGCCGCTTCACTGGTCAACGCAGACAGTCCAGATGTCGTGGAAATTTGGAATCTGGTATTTATGCAGCATAACAGAGAGGTCAATGGTAGCCTGCGACCTCTCCCCCAGTGCAGTGTGGATACTGGGATGGGTTTAGAGCGGCTGGTGGCCGTCCTGCAAGGGAAACGCTCCAACTACGACACCGATCTTTTCACACCTCTACTGTCCGCCATCCACCAGTGCTCTAAGGCTCCTGCATACCAGGGCAGGACCGGAGGGGCTGATGTGGGTCAGGTCGACATGGCCTATCGGGTCGTGGCCGACCACATTCGCACACTCAGTGTGTGCATCGCCGATGGAGTTTACCCAGGAATGACGGGCGCCGAGCTGGTGCTGAGACGTATCTTGAGACGTGCTGTAAGGTTTTCTACGGAAGTGCTGCAGGCCCCTGAAGGTGCGCTGGCAAGCCTAGTGCCTACTGTAGCTCACGTACTGGGAGATGCCTATCCTGAGCTTCATACAGAGTCTGAGAGGATCATGGATCTCATTAATCAGAATGAATCCCAGTTTCTGTCCTCACTGAAGCAGGGCAGAAGAGTGATTGACAGGGCCATCAGCAATATGGACAAAGACTCAGAGGTTTTTCCAGCTTCGGTCGCCTGGTCGCTACATCGTAACCTGGGCTTCCCTCCAGATCTCATTGACTTGATGCTGGAGGAGAAGGGCAAGATCGTTGATAAGAAAGAGATGGCAGTGCTTGAAGATGAATACGAAAAGTTGAGGTCTCAGTCagaggaggatgatgaagatgaggtTGACCAGCTGGATCTTCACAGTCTGGCGGAGCTAAAAAGTCAAGGAGTTCCTCACACAGACGACTCCCCAAAATACCGTTACAGTCTGGGGACGGATGGAAAATATGTGTTTCAGCCTTGCAGAGCGTCAGTCCTGGCACTCTACTGTGACGGGTCTCTGGTTTCAGAGGTCAGTGAGGGTCAGCACTGTGGTGTGATTCTGGACCAGACCAGCTTTTACGCAGAGAAAGGTGGACAGGCCCACGACCAGGGTTTCTTCACCAAGGACGGACTTCAGGATGTGCTGTTCCCTGTAAAGTCTGTCAGTCTGGCTGGGGGTTATGTGGTACATCAGGTCACAGCAGCAGCTACATTGAGACCTGGAGACCAAGTGCAACTTCACTTGGATGAGGTAAACCGAATGGGCTGCATGGTGAAGCACACGGCCACACACTTGCTAAACTTTGCTCTGCGAGAGTTGCTAGGTCCTTCGGTTAACCAGCGAGGGTCTCACTGTGCTGCCTCACGGCTCCGCTTTGACTTCAGCGTGAAGGCCTCCCTGAGTGTGTCTGAGCTACAGCAAGTTGAGGAGTTGGTCCAGAACATCATTCGTCAAAATGCCGAGGTGTATGTAGAGGAGATACCTCTGTCCAAAGCTAAACAGATTACGTGTCTGAGAACAATAGATGAGgtGTATCCAGACCCAGTGCGAGTAGTGTCCGTGTCCGTTCCAGTTTCAGATCTGCTTAACTCAAACAACGTTGAACAAGCTTCAGTGGAGCTTTGTTGTGGCACGCATTTACTGAAGACGGGAGCAATTAGGGACTTTGTTATTGTGTCTGAGCGACAGATGGTGAAAGGCATTAGCCGTATTCTTGCTGTTACTGGAGATGAAGCCAAAAAGGCTCGTGAAACGGCCCAAAACATGCAAGAGGAGTTAGAATCTCTGGCGTTCCGGGTAGGAGCTTCAAGCTCCCTGTCTATACCAGCAGCACAGAGGCTCTCTAAAGAAGTTGGCCTCCTAATAAATGCAGTTGATATCACACCTGTCCCACAATGGCAGAGGCGAGAGCTGCAGACTCGACTGAAAGCAATGCAGAGGTCTATTAACAACACCATCAGAAAATTGGAGATCAAAGAGGCTGCCTTGAAAGCCAAAGACCTGCTGGTCAAACACTCTAATAAACCTGTGGTGGTGGACTTGATCCACACCGAATCAATATCGGTGCTGATGAAGACTGTGCTCCAGCTGAGCAAGAGTTCTCCAGATTCCATGGTCATGTTGTTCTCTCACCTGCAGTTGTCAGGAAAGGTGCTTTGTGCCTGCCAAGTTCCCAAGGGCTCTGCCAGTGGCTCAGCCCTTAAGTGGGCTCATTCTGTGTGTGCACGCTTGGGAGGATATGCAGACGGCTCAACCGATGTGGCTAAAGGTGTAGGAAAAGCGGGCGAACTCACAGATATTACAGACATCTTGCACTGGGCTGAAGAATTCGCACAAAACAAAATCCGAAAGGCATCCTGAACAAACTAATATTGGATGCTTTTTAATCAAAAGGGTTCCTTTGTTTTAAAAGGTTGGGATTGTGATTATTTTGACATTAATCATTGCtattaagttatttattgtttttttttgttgggtgGGTGCagcaaaatgttattaaattcaAGAAACGGCATCGGTCTGTTTAAGAATTGTTAATACATGATTCATATTTCTAA

Function

GO: NA

KEGG:

id description
K01872 AARS, alaS; alanyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224994 lncRNA upstream 66475 12306554 ~ 12331845 (+) True G152028
TU224903 lncRNA upstream 130825 12241277 ~ 12267495 (+) False LOC122327127
TU224932 lncRNA upstream 145034 12252841 ~ 12253286 (+) True G151983
TU224918 lncRNA upstream 146974 12250736 ~ 12251346 (+) False LOC122327127
TU224982 lncRNA upstream 158876 12239108 ~ 12239444 (+) True G152016
TU225052 lncRNA downstream 18524 12426756 ~ 12426972 (+) True G152068
TU225093 lncRNA downstream 171050 12579282 ~ 12617819 (+) True G152095
TU225094 lncRNA downstream 171050 12579282 ~ 12580339 (+) False G152095
TU225089 lncRNA downstream 172607 12580839 ~ 12620676 (+) True G152092
TU225101 lncRNA downstream 181681 12589913 ~ 12629300 (+) True G152101
XM_043223562.1 mRNA upstream 874 12385990 ~ 12397446 (+) True rrbp1b
XM_043223564.1 mRNA upstream 874 12385990 ~ 12397446 (+) False rrbp1b
XM_043223476.1 mRNA upstream 25163 12364335 ~ 12373157 (+) True dzank1
XM_043222310.1 mRNA upstream 201741 12189240 ~ 12196579 (+) False LOC122327127
XM_043222311.1 mRNA upstream 201741 12189240 ~ 12196579 (+) False LOC122327127
XM_043223781.1 mRNA downstream 129 12408361 ~ 12411841 (+) True LOC122328076
XM_043222228.1 mRNA downstream 6350 12414582 ~ 12421657 (+) True LOC122327054
XM_043222229.1 mRNA downstream 13449 12421681 ~ 12424702 (+) True LOC122327055
XM_043223486.1 mRNA downstream 60886 12469118 ~ 12471335 (+) True LOC122327840
XM_043223942.1 mRNA downstream 65021 12473253 ~ 12478935 (+) True LOC122328225
TU225014 other upstream 52570 12345206 ~ 12345750 (+) True G152043
TU225015 other upstream 52570 12345206 ~ 12345750 (+) False G152043
TU225002 other upstream 103603 12293400 ~ 12294717 (+) True G152032
TU224914 other upstream 132628 12238782 ~ 12265692 (+) False LOC122327127
TU224911 other upstream 135289 12048418 ~ 12263031 (+) False LOC122327127
TU225049 other downstream 1074 12409306 ~ 12423922 (+) True G152065
TU225046 other downstream 6340 12414572 ~ 12423922 (+) False G152065
XR_006247603.1 other downstream 699274 13107506 ~ 13112733 (+) True LOC122327162
XR_006247605.1 other downstream 701463 13109695 ~ 13112733 (+) False LOC122327162
XR_006247602.1 other downstream 701469 13109701 ~ 13112733 (+) False LOC122327162

Expression Profile