RNA id: XM_043223781.1


Basic Information

Item Value
RNA id XM_043223781.1
length 2893
RNA type mRNA
GC content 0.37
exon number 2
gene id LOC122328076
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12408361 ~ 12411841 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAAAAGAGGTTTTGATTTTTCAAAAACCCAGAAATAATATactccaaaaacaaaatgcataaaaaactacacaaaaaatGGCAAAGCACCACTAAATATACACATCCGTTATAAATTTTGagaatgcattatatatatttgagattattgattattgaaatattgataCTGTGTTTTATATCAAAGAAGCATATGAAGTATAAGTGGGTTCCTAATAAAACACTtatgaaaaatagttttctgAAGAGAAATAGGACAAGTACTTGACCAAAATACATCCCAATATGAAATATACAGATAAATTAAGTCATAAAGCATAAGAATATTGCATCTCACGTAGTTTCTTCCAACTCAGTGTCTCAAAACTCAATAACGTTTACTAAAACAGTTTGATAGTTGAAACTTGACGCACCTCAAtagacattttttataattatattttttagcactaaagtttttatatatatatttaaagatgttttgtttaaattaaacctAAACTCACTTGCATTATTAATGAGTGACCTGAAATATGAGTGAGGGAGAACTAAGGTTGTGTCATCAGCAAACTGGAGTAAGAATATTTGAAGTCATTTATATAGATAAGAAACAGAAATGATCCAGTTATAGACCCCTGAGGAACCCCACAGAGTAGACTTGCTTTGCTAGCATAGCAACCCTTAAAACAAACTTTCCTCTATTGCAAATGTTTCAACCTTTaagtgtaaaataatgaaaatcatGTTTGTAGTTAAAAATTCCAACCAGTATTTCATATAATGTTTGTACAGTCATTACACTAGGAAGAGCATTTTATCATTCACTTCACACATGCCTCTGTTCTCTGAAGTGATGATAAAAGGTATCAGAGCAGCATATTTTGTATCAACCAGAGTTAACGTGTCAGATCGAAACAAGAATTACTGGCTTTGGTGAGGTATATAGTTTCATTTAACTCACCCAGGTGCGCTAAGAGAAACAGGCAAATTAAAATGCGTCTAAATCTGTTAACGGGTATAGTAATTTTGCACTCTTACATTAGGTAACAGTTTATCtcaatttaaataacaataattaacaaGTAATTTGTGTAAAGTTCCTCATAATTGTATTGAATAATGTTTAAGCCCCTCCCACAATTCATGAGACGAAACAACTCAACAAACAGCTTCAGCAAAACAATAACATGCGTCTTTCAGCGATTCCTTTAGAAAAGCATTCATGGCGATCAGAAGCATAAGAAAGAGGTGCTGTTTGGCTCAGGATAGAGATTTAATATGTCACGTTAAAACAGGATTAGTTCTGCTAGTCACATTGAGTTTATTGTTTCTCGTCTCTTGTATCTACGTTCTCTCATTTAACCCAGTCAGACATCCTCGCACCTGGTTTAAACCTGTAAATCAAACTCACTCCTATAATATGGTGACTGAGGGCTTGTCTGCCAAGAAATATGTctggaatttttttattgctccTCCAATCattcaaacaacaacaactgcacTAAAGAATCACATTTCAGTGAATCATCATGTGGCTCATCCAAGCAACTATCACTTCCTCATAGATGAACCTAATAAATGTAGTCAGTTGGATCCGTTCCTGGTCTTTATGGTCCCCGTGGCCCCCCATCAGCTGGAGGCTCGTGACGCCATCCGGAGCACATGGGGGAACGAGAGCTCAGTGCAGGGAAAAGCAGTGCTGACTCTGTTCTTGGTGGGTTTGTCTGGAGGAGCTGAAGCTCAACAGCAGCTGGAGGAAGAGAGTCGACAACACAGAGATCTACTGCAGAGCGACTTTGTGGACTCCTACTTCAACCTGACCATAAAGACCATGGTGATCATGGACTGGTTGGCCACTCGCTGCCCTCAAGCAACTTACGCTATGAAGGTTGATTCTGACACGTTCATAAACCTGGAGAACCTGATGAGCCTTTTATTGTCACCCAACACCCCCAGAGAGAACTACATCACAGGGTATTTGATGTGGGACCAAAATGTCATTAGAAACAACAAATCAAAGTATTACGTCTCAGTGGAGCTGTATCCCGAACCGAAATACCCCACTTATGTTTTGGGAGCAGGATATGTGTTTTCCAACGATCTTCCTCAAAAAATAGTTGAGGCTTCCAAAGACATGAAGCCCTTTAACATAGAGGATGCGTATGTGGGCACTTGTCTGAAACGGTTGGGCATTAAACCCTCACGTTCTCCAGATCCTTCTAAGTTTCGAATGTATATGAAGGATTCTAAAACTCACGACCTTTCCAAGGTCATTACGACAATCGCAAGGTCACCGAAGCAGATAATAGAGTTTTGGCAAAGTGTAAAGAGTCTCAAATGAACTGGTAAAACGGGAATGagcaaaatgaaacacaaatgtCCGTATGCTTTCCATATTCAAATTCACAAAGCATTCTCTCTCATTTTTGCCTCTTGTTTCAGGATCACCAAGCCGATGCTTTAGAGGAATTAACCGTCTATATCAACAGCTATCAATAGTATATTCATCATTCAAAAATATGAACCGTATATAGGAGATAAAAGCAGATGTAGGAAACGTTAATAAAACAGTGCTTGTTTACCATTTTGAATATCATTTTAAGCGGATCAAACTGTTATGTTTGCCTATTGCAGTGTTTGGATAAGATCAGGTCTGTGCTGCCTTCATGTACTTTCTCGTTTTAATAACTCTTAATTCTCAGGCACTGACTCGGTCGCAGAATGAACATCCAATCAGTTCTCACCAGCGAACGGGGCAAACTGATGGCCCTAAAAGTAGTCAGTCTGACAGTATTTACATTGTGCGCCagagaaacaacatttttaatgtctgtttttgGCACTAACTGTGTATAACTGTGttgttaatgaataaaaatctggATCATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224994 lncRNA upstream 76516 12306554 ~ 12331845 (+) True G152028
TU224903 lncRNA upstream 140866 12241277 ~ 12267495 (+) False LOC122327127
TU224932 lncRNA upstream 155075 12252841 ~ 12253286 (+) True G151983
TU224918 lncRNA upstream 157015 12250736 ~ 12251346 (+) False LOC122327127
TU224982 lncRNA upstream 168917 12239108 ~ 12239444 (+) True G152016
TU225052 lncRNA downstream 14915 12426756 ~ 12426972 (+) True G152068
TU225093 lncRNA downstream 167441 12579282 ~ 12617819 (+) True G152095
TU225094 lncRNA downstream 167441 12579282 ~ 12580339 (+) False G152095
TU225089 lncRNA downstream 168998 12580839 ~ 12620676 (+) True G152092
TU225101 lncRNA downstream 178072 12589913 ~ 12629300 (+) True G152101
XM_043223780.1 mRNA upstream 129 12398320 ~ 12408232 (+) True aars2
XM_043223562.1 mRNA upstream 10915 12385990 ~ 12397446 (+) True rrbp1b
XM_043223564.1 mRNA upstream 10915 12385990 ~ 12397446 (+) False rrbp1b
XM_043223476.1 mRNA upstream 35204 12364335 ~ 12373157 (+) True dzank1
XM_043222310.1 mRNA upstream 211782 12189240 ~ 12196579 (+) False LOC122327127
XM_043222228.1 mRNA downstream 2741 12414582 ~ 12421657 (+) True LOC122327054
XM_043222229.1 mRNA downstream 9840 12421681 ~ 12424702 (+) True LOC122327055
XM_043223486.1 mRNA downstream 57277 12469118 ~ 12471335 (+) True LOC122327840
XM_043223942.1 mRNA downstream 61412 12473253 ~ 12478935 (+) True LOC122328225
XM_043223457.1 mRNA downstream 73364 12485205 ~ 12503977 (+) True vasna
TU225014 other upstream 62611 12345206 ~ 12345750 (+) True G152043
TU225015 other upstream 62611 12345206 ~ 12345750 (+) False G152043
TU225002 other upstream 113644 12293400 ~ 12294717 (+) True G152032
TU224914 other upstream 142669 12238782 ~ 12265692 (+) False LOC122327127
TU224911 other upstream 145330 12048418 ~ 12263031 (+) False LOC122327127
TU225046 other downstream 2731 12414572 ~ 12423922 (+) False G152065
XR_006247603.1 other downstream 695665 13107506 ~ 13112733 (+) True LOC122327162
XR_006247605.1 other downstream 697854 13109695 ~ 13112733 (+) False LOC122327162
XR_006247602.1 other downstream 697860 13109701 ~ 13112733 (+) False LOC122327162
XR_006247604.1 other downstream 697969 13109810 ~ 13112733 (+) False LOC122327162

Expression Profile