RNA id: XM_043223786.1


Basic Information

Item Value
RNA id XM_043223786.1
length 4560
RNA type mRNA
GC content 0.54
exon number 24
gene id cntnap5b
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 7234901 ~ 7283785 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctctctctctcaaaactCAACCGCTTTCCACAGATCGTATCATTCGGCTCACAGCGCACAACCTCTCCACGCTGCGTCCGCCGGCTCGCTCATCAAAACGCGCAAAGTCTCATTCTGACCTCAGCATCTTCTCGAGTTCAGCTGGACCTGAACAGTTCGGAATACGAAGCAGATCTGAAGGCGTCCAGACCAACCCCAAAAAACTTAGCGCGCGCAGAGTCTCGTGGGAAGAGCCTAACGTATGTCTTTAAGAGGAACTATGGGGGGAGCGTCTCGTTCGATTCATCACCGGACAGACTAGCCGAAGAGCCGCTGGAGCCGACCCCGAACTGGCTGTTTGGAGCTATTTTACGCTGGCTGGGAATATAGTGCAACTTGGATAAGCGTTGTTGTGCGTTTGGAGAGGTGACGAAGGCGGTGCTGATGGACGCGCTGAGTCTCCACGCGTTCGCGCTCCTGTGCGCGCTACGCGCCACACTGGCAGCAAACAACTACCACTGCAATGGGCCACTGGTTTCTGCTCTTCCTCCCACATCATTCCAGAGCTCCTCATCTTCCTCCGACAGTCAGTTGCCGTATTTTGCCAAACTCAACAGAAGAGATGGAGGTGGTGGCTGGGCTCCAGAACGAACAGACAGGCTAAGATGGCTACAGGTGGATCTGCGAGAACGGGTTGAGGTCACAGCTGTGGCGACCCAGGGTCGTTTCGGAAGCCCTGATTGGGTTACGAGTTACATGTTGCTGTACAGTGACACAGGAAGAGCTTGGAAGCAGTTCAGACAAGAGGACAACATAGGGACTTTCCCTGGAAATACAAATTCAGATGGGACTGTTCACCACAAGCTCTCACACTCCATAAGAACACGATTTCTGCGGTTCTTGCCGGTGGACTGGAGTCCCGGGGGATGGATGGGGCTCAGAGTGGAGGTCTACGGCTGTGCATACAAGTCGGATGTTGCAGACTTTAACGGCAGGAGCTCTTTGCTGTACCGGTTTAATCAGAAGTCCACCAGCACTGTGAAAGACGTCATCTCTCTACGGTTTAAGAGCCAGCGTGCAGATGGGGTCCTTGTGCATGGAGAGGGACAAAGAGGCGATTACATCACCCTAGAGCTGCATAAGGGCCGACTGGCCCTGCATATCAATCTGGACGATGCTAAGACGCACCCTAGCAGCGGCCATGTCTCTGTGTTTCTGGGAAGTCTTCTGGACGACCAGCACTGGCACTCCGTCCTGATCGAGCGATTTAACAAACAGATCAACTTCACCGTGGACAGACTAACCAAACACGTGAGGACGGGTGGGCTGGATGATTCGCTGGAGGTTGATTATGAGCTCAGCTTTGGAGGAATCCCTCTTCCCGGAAAACCAGGCACGTTCCTGCGGAAAAACTTCCATGGATGCATGGAGAACCTCTACTACAACGGAGTCAACATCATTGACTTAGCCAAACGACGCAAACCTCAGATCTACAGCGTGGGGAACGTGACTTTTACCTGCTCAGAGCCTCAACTAGTATCCACTACCTTCTTGAGCTCCAGCAGCAGTTTCCTGTCGCTTCCATTGGATGCTGCCACGGAAACGCTGTCAGTGACGTTCCAGTTCCGGACGTGGAACCGGGAAGGGATGCTGCTGTCGGCCTGGCTGAAGCGGGAGTCGGAGAGACTGCTTTTGCTTCTCGTTCACGGCCAGCTTAGACTCACACACCACAGATCAGCATTGCAAAGCTCTGATATAGTCATCGGTCAGGCTCTGAGTGACGGCCAATGGCACACGGTGTCCATTAGCGTGGGAGGTTTCCAGGTTTCCCTCTCAGTGGACGACGAGCCACCGTCTACCATGCAGCTGAAGGACATCGCGCAGCCCGGGAGGAGCGTGCTAATTGGAGgttgcCCATCAGTATTAACCAGTCAGGGTTGCCGGAATCCGACACTGGCCTATCAAGGCTGTATGCGCTCTGTTATCATTAACAACCAGCCAATCAACTTCTACCTGGTGCAGCAAGGCCTGCTGGGAAACTACAGCAAGCTCCAGTTTGACATCTGTGGCATTTGTGACAGatGTCTTCCTAACTACTGCGAGCATGATGGAGAATGTTCTCAGTCTTGGAACACATTCTACTGTGACTGTTCGGGAACAGGATACACGGGAGCCACGTGTCATAACTCCATCTTTGAACCCTCCTGCGAGGCCCACCGGCTCACAGGAAGTGCCTCAGGCTTTTTCTCAATCGATCCCGATGGAAGCGGACCGCTCAAATCCACCGTCGTATACTGCAACATAACCGATGATAAGGTTTGGACCGTAGTAAATCACAACAGCACAGAGACGGTGAGGGTTCAAGGGTCGTCGCTTCAGAAGCCCCACGTGATGCGGTTCAACTACAGCGCGTCTCTGGAACAGCTGCGGACGCTTGTGGGCAGGTCTGAACAGTGCCAGCAGGAAGTTGTTTATCTCTGCAAGAAGTCCCGCCTCTTCAACACATGGGATGGAACGCCCTTGTCCTGGTGGCTGGACCAGGCGGGAGAGAGAAGGACGTACTGGGGTGGATTTCTCCCCGGGGTGCAGCAGTGTGCCTGCAGTCTGGATGAGAACTGCATCGATATGAACCACTTCTGCAACTGTGATGCTGACCGCAGCTCATGGGAGAATGACACAGGAGTGCTGTCCTACAAAGAGCACTTACCAGTGACCGAGATCTTGGTAGGAGACACAAACAGAAGCGGGTCAGAAGCCATTTACAGAGTGGGATCTCTGCACTGCTACGGGGACAggTTTCTGTGGAACGCCGCTTCCTTCTACCAGGAGTCGTCCTACCTGCACTTCCCAACGCTTCAGGCCGAGCTCAGCGTCGACATCTCGCTCTATTTCAAAACCACAGCTCCCTCCGGAGTCTTCCTGGAAAATCTGGGCACAAAAGACTTCATTAGAGTGGAGCTCAGCGCCCCCTCCGTCGTGACCTTCACGTTCGATGTGGGTAACGGGCCGGTGGTTCTGACGGTGAAGTCTCACGTGCCGCTGAACGACAAGCAGTGGCATTACGTCCGAGCGGAGAGGAATGTGAAGGAGGCGTCGCTGCAGGTGGACCAGCTGCCCTTGCGTTTCCTGGAGGCCCCGTCTGAAGGCCACACCCACCTTCAGCTCAACAGCCAGCTGTTCATTGGAGGCACAGCCTCGAGGCAGAGAGGATTTCTAGGGTGCATCAGGTCATTAAACATAAACGGGATGACGCTTGACCTTGAGGAGCGGGCTAAAATGACCCCTGGGGTCAGTTCAGGGTGCCCCGGTCACTGCAGCAGCCAAAACAGCTTGTGTCACAACAGGGGGAAATGTATCGAGAAGAGCAGCGGCTATGTTTGTGACTGCACACACTCAGCCTACGGAGGACCCAACTGCAAGAAAGaAGTTTCCGTGTCCTTTGAAAGCGGGTCCTCGGTGACCTACACCTTCCAGGAACCGTTTTCCGTGATGCGCAACCACAGCCGTCAGTCCTCAGCTATCTTCGCCCAAAGCAGCAATTCACGAGAGAGCATCGCCTTTAGTTTCCTCACAACTCAAACGCCTGCCATGCTTCTGACAGTCAACACCTATCATCAACAGTACATGGCCGTTATTTTGGCTCACAATGGAAGTTTGCAGATTTGGTATCGGctaaacagagagaaagagccgGACATCTTTACTCCTACATCCATTAATTTGGCCAACGGAGAACTCCACAGAGTCCAGATCCATAGAGAAGGACGGGACATGTATGTCCAGATTGATAAAGATACCAATCTGAAATACAGCCTGTCCACGGACAAAGAGTTGATCACGATAAGGTCTTTGACATTGGGGAAAGTCACAGGTCGAGCTGGTGTAGATGAGGAGGTTCTCCAGGCTGGATCGAGAGGTTTCATTGGCTGTCTgtcttcagttcagtttaaccaTTTGGCTCCTCTCAAGGCGGCCATATTGAATCGAGGCAGCTCGTTGGTCAGTGTTCTCGGGAACCTGGTAGAGTCGAATTGTGGAGAGCTGGCTGATAAGTCTTCATCCAGATCTTTGTCCGATCATGCAGACACAGGAAGTAGAGGGAAAAAGCTTACAAATGCTGCCCAAAGTGACTCCGCTGTAATTGGGGGTTTGATCGCAGCAGTAGTGCTCATTACCCTCTGCGCCGTGGCCGTGATGACCCGCTTCCTGTACCGTCATCGACACGAGCGTACACGGCAGATGGCCTCCGTCAAGGAGAAAGATCACCAGCCCAGGCCAGAACTCAGATACCGGGCCGAACTGGACCTCCACAGTGCCATGCGAGACAGCAGGAAAGAGTACTTCATCTGACCTGTGTCGTACGAACCTCGTGACCCCCACTGAGTCGCTGCGACCCTAACGTTCGGCGCCAACTCAGTGGACAGGGATTGGGGACAGGAAGTCAGCTGAGCCTTGTGGACACAGCCAGTGCCCTTCACCCTCCCAACCACTGTCCTTTAGCATCCAGGATTCAGGGAATGGAAAGTACATAACACAGAATTACAGCGGGACACAGGCAGCGTGGCGGATTCTAACAGACCG

Function

GO: NA

KEGG:

id description
K24338 CNTNAP5; contactin associated protein-like 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222856 lncRNA downstream 3413 7230690 ~ 7231488 (-) True G150571
TU222848 lncRNA downstream 38218 7196353 ~ 7196683 (-) True G150564
XR_006247727.1 lncRNA downstream 60456 7171342 ~ 7174445 (-) True LOC122327846
TU222806 lncRNA downstream 212204 7022401 ~ 7022697 (-) True G150542
TU222805 lncRNA downstream 213218 7020763 ~ 7021683 (-) False LOC122327113
XR_006247596.1 lncRNA upstream 6898 7290672 ~ 7296555 (-) True LOC122327085
TU222888 lncRNA upstream 125639 7409413 ~ 7423399 (-) True G150596
TU222918 lncRNA upstream 166474 7450248 ~ 7469574 (-) True LOC122327668
XR_006247703.1 lncRNA upstream 185698 7469472 ~ 7470144 (-) False LOC122327668
TU222925 lncRNA upstream 200090 7483864 ~ 7484934 (-) True G150626
XM_043223523.1 mRNA downstream 128261 7058157 ~ 7106640 (-) True ahr2
XM_043222295.1 mRNA downstream 179339 7020754 ~ 7055562 (-) True LOC122327113
XM_043222301.1 mRNA downstream 232354 6997908 ~ 7002547 (-) True LOC122327118
XM_043222297.1 mRNA downstream 240267 6986565 ~ 6994634 (-) True LOC122327115
XM_043222298.1 mRNA downstream 262943 6962514 ~ 6971958 (-) True LOC122327116
XM_043222264.1 mRNA upstream 103283 7387057 ~ 7389184 (-) True s100b
XM_043222263.1 mRNA upstream 103283 7387057 ~ 7389119 (-) False s100b
XM_043223138.1 mRNA upstream 210887 7494661 ~ 7514404 (-) True aox5
XM_043223417.1 mRNA upstream 230965 7514739 ~ 7515901 (-) True LOC122327800
XM_043222302.1 mRNA upstream 234026 7517800 ~ 7518955 (-) True LOC122327121
TU222808 other downstream 179699 7030307 ~ 7055202 (-) False LOC122327113
TU222752 other downstream 321343 6906000 ~ 6913558 (-) True G150492
TU222739 other downstream 345244 6854770 ~ 6889657 (-) False nab1a
XR_006247718.1 other upstream 326082 7609856 ~ 7618398 (-) False LOC122327776
XR_006247717.1 other upstream 326082 7609856 ~ 7618398 (-) True LOC122327776
TU223633 other upstream 1600347 8884121 ~ 8886941 (-) True G151107
XR_006247692.1 other upstream 1729774 9013548 ~ 9171931 (-) False nfia
XR_006247693.1 other upstream 1729774 9013548 ~ 9171929 (-) False nfia

Expression Profile