RNA id: XM_043223812.1


Basic Information

Item Value
RNA id XM_043223812.1
length 1461
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC122328100
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 2112781 ~ 2114243 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGCGGAACGACTGAGACAGCACCAGAGGATCCACtctggagagaaaccttacaagtgttcacactgcGACAAGAGATTCAATCGGTCAGAAAACCTGAAAACACATGTGAGAACTCACAGAGAGAAACCATACAcgtgtgatcagtgcgggaagagttttgCACAAAAAGGACACCTTACTGCGCATCTGACCGGTCATACGGGAGAGAGACCGTTCACATGTgttcagtgtggaaagagttttgcaCAAATAAGAATCCTTAAGAAACACATAAACATCCACACCGGAGTGAAACCGTTCAcatgtgatcagtgcgggaagagtttcacaCATTCATCGCAACTGAAGAGACACATGACCATCCACACCGAAGAGAAACCGCATACGTGCGATCAGTGCGGAAGAATATTTTTGAGGGATTCGTACCTGAAGAAACACCTGAAAGTTCATTCAGAAGAGAAACCACATTCATGTTCTTTCTGTGGAAAGAGATTTTTACTGCTGCAAAGTTTAAAACTGCATCAGAAGATACACACTGGTGTGAGAGATTACATTGAGCGTGAAGAGACTTTTATTATAGCTGAACAACTGAGACGGCACCAgaggatccacactggagagaaaccatacaagtgttcacactgcGACAAGAGATTCAGCCAGTCagaaaatctgaaaacacacgagagaacccacaccggagagaaaccatacaagtgttcacactgtggCAAGGGATTCAATCGGTCAGAATATCTGAAAATgcacatgaggatccacaccggagagaaaccttacTCGTGTGATCAGTGTGGCATGTGTTTTACACAAAAAGGAAACCTTACTGTGCATCAGGCTGTTCATACGGGAGAGAAACCATTCACTTGTGATCAATGTGGAAACAGTTTTGCACAGTTAAGAGTCCTTAAGAAACACATGAACATTCACACGGGAGACAAACTGTTCACATGTGAtgagtgcgggaagagtttcacaCAACAAGGATTCCTTACCATGCACATGAACATCCACACTCGAGAAAAGCTGCACATATGCGATCTCTGTGGAAAGGCATTTTTGTGGGCTACGAACCTGAAGAATCATCTGACCGTTCATTCAAAGGAGAAACCGCATTCATGTTCTGTGTGTGGAAAGAGCTTTTCACGGCTGGATAATTTAAAAGCCCATCAGAAGATACACACTGGGGTGAAAGAATACATGTGCTTTGAGTGTGAGAAGACTTTTATTACAGCTAAAGAATTAAAACGGCACCAGAtgattcacactggagagaaaccttacaagtgttcacactgcGACAAGAGATTCAGACAGTTAGGAACTATGAAAAGGCATGAGATGATCCACACCAGAGAGAAACCTTAAATGTGATCgatgtgaaaacatttttgagggATTTAGTCCCAAAGAAGCACATTAAAGTTCGTTGAAAAATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219872 lncRNA downstream 13844 2098217 ~ 2098937 (-) True G148687
TU219533 lncRNA downstream 134921 1452656 ~ 1977860 (-) False G148517
TU219841 lncRNA downstream 154688 1952937 ~ 1958093 (-) True G148663
TU219790 lncRNA downstream 205034 1809065 ~ 1907747 (-) True G148632
TU219788 lncRNA downstream 205034 1809501 ~ 1907747 (-) False G148632
XR_006247744.1 lncRNA upstream 77 2114320 ~ 2116140 (-) False LOC122328032
XR_006247745.1 lncRNA upstream 77 2114320 ~ 2115943 (-) True LOC122328032
XR_006247726.1 lncRNA upstream 15288 2129531 ~ 2132683 (-) True LOC122327838
TU219862 lncRNA upstream 15599 2129842 ~ 2132180 (-) True G148679
TU219901 lncRNA upstream 42013 2156256 ~ 2156817 (-) True G148707
XM_043223833.1 mRNA downstream 149554 1959836 ~ 1963227 (-) True LOC122328124
XM_043223608.1 mRNA downstream 184075 1915392 ~ 1928706 (-) True ampd2a
XM_043223585.1 mRNA downstream 314096 1699898 ~ 1798685 (-) False LOC122327910
XM_043223714.1 mRNA upstream 6346 2120589 ~ 2123969 (-) True LOC122327992
XM_043222262.1 mRNA upstream 10347 2124590 ~ 2128965 (-) True aqp12
XM_043223385.1 mRNA upstream 18498 2132741 ~ 2142363 (-) False pak2b
XM_043223384.1 mRNA upstream 18498 2132741 ~ 2142363 (-) True pak2b
XM_043223937.1 mRNA upstream 28795 2143038 ~ 2146476 (-) False pigx
TU219752 other downstream 448154 1661185 ~ 1664627 (-) True G148613
TU219689 other downstream 458441 1643710 ~ 1654340 (-) True G148574
TU219728 other downstream 498243 1583744 ~ 1614538 (-) False LOC122327997
TU219681 other downstream 649605 1461873 ~ 1463176 (-) True G148573
unassigned_transcript_2536 other downstream 679266 1433445 ~ 1433515 (-) True trnag-gcc_102
TU219884 other upstream 95 2114338 ~ 2116183 (-) False LOC122328032
unassigned_transcript_2537 other upstream 13619 2127862 ~ 2127935 (-) True trnai-aau_113
unassigned_transcript_2539 other upstream 16380 2130623 ~ 2130696 (-) True trnai-aau_114
unassigned_transcript_2540 other upstream 16644 2130887 ~ 2130958 (-) True trnad-guc_17
unassigned_transcript_2541 other upstream 16970 2131213 ~ 2131283 (-) True trnag-gcc_103

Expression Profile