RNA id: XM_043223877.1


Basic Information

Item Value
RNA id XM_043223877.1
length 3944
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC122328171
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5481708 ~ 5490754 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cccagccaccctacggaggaaactcattttggccgcttgtatctgggatctcatcctttcggtcatgacccaaagctcatgaccataggtgagagtataGGAATGAAGATCGATTGGTCTttaccatgacagaccagtacagcgaccgcattactgcagaagctgcaccgatccgtctgtcaatctctcgttccatccttccctcactagTGAACAAGACTCCAAGATACTTatactcctccacctgaggcaggagctccccaccaacctgaagggggcaagccacttttgtccgactgagaaccgtggcctcagacttagaggtgctgattctcatcccagccgcttcacactcagctgcaaaccgccccagcgcacactgtaggtcttggccagatgcagccaacaggacaacatcatccgcaaaaagcagagacgatatcctgtggtcaccaaaccggCCCCCGAAATCCTGTCcatataaataatgaacaggaaTGGTGACAAAGGGCAGAGTTAATAACATTTAGTAATATCATCTTCTTGTTTTTGGTTGAgggaatcattctaatatttaaaagcCACACTCTATAAACTACTAAAATATAGGCTATTCGAAGTAAGTAGGCTAGTATACTAGTTCTATCATCACGCCCTCTTTTTGAACGTGATTATTTTCATTGGGGAGGGGTTGAAGCTCCTCCCACAGCGATTTAAatcaagtctgctttattgtcaaatTTACTAGTAAATGCTGGAATATTCCCCCCAGTTTACAAGCAAAGACGATTGAAAGAAGTTTGTGAACATGATACTGAAGAACAAAGATATAGTTGTTTGAAATTgagtgatattttaatattgatatgGGAAAAACCGTTGCACGTGGTGCTGGAACGTTTTCGATCAAATTCGAAAATgtctaatgtatttttttttgtaaaaattacgTTTTCATTCAATTGTTTTTCAGTAACATCTCGTCTCTGAAAATATATTGACAAACATCACATGTTTGGTGTAGAAAAATAGCGATTGCCTTAAATAGCGGTGTCTTTCTTTTATGGACACGCTGCGCTTTCTCTTAACGTCGCAAAacgttattatttatttatattaatatcgcgagattttaaaataattttactttttagacCTGACGGAAGACAATAAGGAGAGTGAAGAACTGAATTATAACTGGttctttacaaaataaacatcgCTTCGTGTAAGTTATATAGGCTAGTATAAAACCACTATCCAAAAGAGCAATCATcggatattttaatatttctcacTACggaaaaatgactgaaataaaatatgaagcgTTGGCGATAGGTGGCGGTAATACACTTCCGTGTCTACGATCTGAcgtaaaagaagaagaagactaCGTCGCCACTGACGTCATCAGTCAGCGCTGGGTTTCTGAGCAGTGCAGCGTTTTGACAGAGGTTCATCGCTAAATGCTGGAATATTTCAATTACTAAAAGTAAAGAAGCttacatttgtgaaagaaacttaaaaacatgaatgatcCAGAGCCCTGCGgaataaaacaagaagaaactGAGCCACAAATAGACCTGTTTGAAGAGAGCAAGGAGACTGAAGCGGGGGAGAAACATCATGTCAAGACTGAAGAAACATCTTCACCGAAAAACGACAATACGTGTTTCGCTTaccctcagtgtggaaagagtttctcATGCAAGCAAAATCTGGACCTTCACATAAAATGTCACAGTGGGGGGACGCTGTATGCTTGTGAGCAGTGCGGTGAGATTTTCGCAATAAAAGAAAACCTAACCGAACACATGAAAATCCACACCGCAGAGAAACCGCACACGTGTGATCGGTGCGGGAAGGGTTTTTCCAAAAAAGGAAACCTTAACGATCACCTGAAagtccacaccggagagaagccgttctCATGcgatcagtgcgggaagaggTTCTCGGTTAAAAGCAACCTCAACAAACACGTAaaaatccacaccggagagaaaccgcacacgtgtgatcagtgcgggaagtGTTTCGCGCATAAAACAAACCTTAATAATCACATGAcaatccacaccggagagaagcggCACAcgtgtgatcagtgcgggaagaaTTACTCGCGAAGAGGAGCCCTTAATTTCCACATGAAAGTCCACACCGGAGAAAAGCCGTACACttgtgatcagtgcgggaagagtttcagaCAATCAAGTGTTTATAAAGTACATCTGCTTACTCATTCTAGAGAAAGGCTGTATAGCTGTGACCAGTGCGGTAAAAAGTTTTTTAGGCCCGATTACTTGAAGGACCACCTGACAGTTCATACAAAGGAGAAGCCTTACGTGTGTTCtttgtgtggaaagagtttcaggCAGATGTGTGCTTTAAAGATACACCAGAAAAGACACAGCGGCGTGAAGGATCACGCTTGCTCTGAATGTGGGAAGACTTTTGTTACAGAAAGTGCTCTGAAGGTGCATCACACAGTTCACTCTACAGAAACGCCTTtcaagtgttcacactgtggCAAGAGATTCAAACGATCAGCGTATCTACAGATACACGAGAGggtccacaccggagagaagctgTACGCGTGTGATGAGTGCGGGAGGAGCTTCACTCATTTCTCTTCTCTATCcagtcataaaaatgcatgtctgtctgtcagtcatgtTGGTCACCGATGGTATATACAGTTTTATAATGTTTCCAGTTtctcaatttttcattttaggtttacGTTGAGTTCAGTAGGTGGCGGGAACGCACCATTTAAGTTGGTTGACCTACCGCCcgtgaaaaacaaagaaagacgACAATCAGCGGAATTCACCTATAAATGTTGGAATATTTCCATTAGTTTAAAAGTGAAGACAGTTCATGGTAGAAGAGTGAGGACAAAAGTGATTCACAACCCCCGAAGAACGGTAAAGGAGCATACTGAAGAACGAATAGACCTGATGGAAGAGAATGAGAAGAACGAAAAACCGAGTGAAGCAGAGGAGAAACATCACGTTGTTAAGTTCGGAAGAAAATCTTTGAGTTCCTCACCGACTGAAAGCAATTCGTTGAAACGAGGAGCCGGAACATCTTTAACCTGCCCTCTGTGTGGAAAAGGTTTCATGAACAAACACACTGTTAAAGTTCACATGAcaatccacaccggagagaggcCACACGcgtgtgatcagtgcgggaagagtttcacacaaaaatgcGTACTTAAGGAGCACGCGAAAATCCACACCGGAAAAAGACCCTACACGTGTGATCAGTGTGGTAAAGGGTTTCTTAGGACAGGCGCCCTGAATAACCACCTGAAAGTTCATACGCAGGAGAAGCCTCACATATGTTCtttgtgtggaaagagttttagtGAGCTGGCTGCTTTAAAGAAACACCAGAAAAGACACAGCGGTGTGAAGAACCACATGTGCTTTGATTGTGGGAATGTCTTTTTTGATAGCGCTCAACTGAGACGCCACCAGAGAACACACACTGGAGAAAAGCCTTACAAGTGTTCACATTGTGACAAGAGATTCAGTCAGTCAGAACATCTGAAAACACACGAGAGggtccacaccggagagaggcCTTTCACttgtgatcagtgcgggaaaCGTTTTGCCCGAAAAGGACACCTGAAGGGTCACATGAAagtccacactggagagaagccgtaTCTCTGCTCTCGGTGCGGGCAGCGTTTCGCCTGGTTAAATTCGCTGCGCAGTCATACAAAAGACAAATGCCTGAAATGAGTTCATCAGTTCATCTTTAGATCACTTAAGTGCCATGCTTGCATTAATCCCAGTCTTATCATTAAACAATTTGTAGatttataattatgaaatgcaaatgacGATTTATGAATGCTTTTTGATGTTGAAGTTCCTAAATGCctaataaatgatatttcacCTCGGAGA

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222105 lncRNA downstream 11200 5418456 ~ 5470508 (-) False G150086
TU222122 lncRNA downstream 27376 5451436 ~ 5454332 (-) True G150093
TU222101 lncRNA downstream 34232 5441543 ~ 5447476 (-) True G150086
TU222100 lncRNA downstream 34232 5442348 ~ 5447476 (-) False G150086
TU222099 lncRNA downstream 52939 5428197 ~ 5428769 (-) False G150086
TU222121 lncRNA upstream 7187 5497941 ~ 5506152 (-) True G150092
TU222166 lncRNA upstream 17816 5508570 ~ 5512967 (-) True G150121
TU222216 lncRNA upstream 54514 5545268 ~ 5545768 (-) True G150161
TU222171 lncRNA upstream 88716 5579470 ~ 5583041 (-) True G150125
TU222262 lncRNA upstream 113403 5604157 ~ 5604418 (-) True G150184
XM_043223875.1 mRNA downstream 849 5471936 ~ 5480859 (-) True LOC122328170
XM_043222709.1 mRNA downstream 47565 5430855 ~ 5434143 (-) True LOC122327381
XM_043222696.1 mRNA downstream 102821 5373452 ~ 5378887 (-) True LOC122327375
XM_043222560.1 mRNA downstream 107900 5364636 ~ 5373808 (-) False LOC122327304
XM_043222606.1 mRNA upstream 1336 5492090 ~ 5496079 (-) True LOC122327326
XM_043222899.1 mRNA upstream 32484 5523238 ~ 5525432 (-) True LOC122327491
XM_043222608.1 mRNA upstream 36476 5527230 ~ 5532809 (-) False gls2b
XM_043222607.1 mRNA upstream 36476 5527230 ~ 5532809 (-) True gls2b
XM_043222609.1 mRNA upstream 36476 5527230 ~ 5530614 (-) False gls2b
XR_006247637.1 other downstream 327852 5145926 ~ 5153856 (-) True LOC122327354
XR_006247647.1 other downstream 744848 4716738 ~ 4736860 (-) False LOC122327545
TU221294 other downstream 893286 4585468 ~ 4588422 (-) True LOC122328156
XR_006247639.1 other downstream 995365 4482821 ~ 4486343 (-) True LOC122327455
XR_006247640.1 other downstream 1048208 4430698 ~ 4433500 (-) False LOC122327456
XR_006247634.1 other upstream 36803 5527557 ~ 5532809 (-) False gls2b
XR_006247648.1 other upstream 47802 5538556 ~ 5542080 (-) True bloc1s1
TU222186 other upstream 47807 5538561 ~ 5542059 (-) False bloc1s1
XR_006247631.1 other upstream 153659 5644413 ~ 5652158 (-) False nisch
TU222175 other upstream 368593 5859347 ~ 5861317 (-) False timm13

Expression Profile