RNA id: XM_043223879.1


Basic Information

Item Value
RNA id XM_043223879.1
length 1626
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC122328173
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6096110 ~ 6097823 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGGTGAGGTTCTGGAAAAGACTGTAAAGCAACCCAGTGATGCCAATGCATACCGACGCCTGCGCACGTTTTCAGCCATAGTTCCTACCCCCCCAGGAGAGGAGAATATGGAAACCTGGATTGAACAAGCAAGGCTTATGATAACGGAGTGTGAGTgctctgaaaagaaaaaacgaCGACACTTAATTGTAGAAAGCCTGAAGGGACCTGCTCTGGAGATCATAAGAGCTGTCCGGTTTTCAGATCCTGAGGCGAGTGCCCTGCAGTACTTGGAAGCATTAGAGAGCACATTCGGCACCTCCGAGTCTGGTGAGGACTTGTATTTCAAGTTTCGTCTCATGCGTCAGAACACTGGAGAGACCCTCTCTGAATTCCTGCGAAGGATAGAAAAGATGCTCAACAAAGTTGTAGAACGTGATGGATTAACTCCAGGACTAGTGGATAAAGCACGAATTGAACAGTTAGTTCGAGGGGCCGTGAATTCCGACATGATGTTGCTCCAGCTACGgctaagagaaagaaaaaatcacCCACCTTCTTTTCTTAGTCTACTGAAGGAGATACGGGAGGCAGAGGAGAGTGAGGCATCTCGCCACAGGATGTCTGTTAAAGCCAAAGCTATACATTTTCATGAAGAAGAGAGAACCAGCACCTCTGTCATCCAAGAACTCAAGGCTGAGATTCAAGAGTTAAGAACACAAATATGTGGAGGTGAGTCCAAAACAGTGTCTACTTCATCCCTTGTaattaaaccaaaagaaaaacagataaagAATGAAACAACTGACAATGCTGAAGTCCAAGAGTTAAGAAAACAGATCGAAAATTTGCAGCAGCAGTTGACCATTATGAGTGTTAGCTCTACTCACCTCTCACATCAAGTTCCCGAGAGGCAGCCAAAACCTTCCACTTCGTACATGTCCCTGAAAGGCAAAGTAACAAGAACAAGAGATGATTATTTCTGCTACAGATCAAAGAGTGAGAAGTATGAGACTAGCGACAACAGCAGAAAAGCCCAGAACCAAGCCTGTTTCTCCAAAAAGAGTCAGACAGACATCAGTGAGTCCAGCAGTCTTCCCAAAGGCCTAGTTGGACCGGCATCTACTGTGGAAGTGAAGCTTAATGGACATGTATGTCAAGCCCTGTTAGATACCGGATCACAGGTGACGATCGTGTTTGACAGCTGGTTTTCCAGGAATCTCGCTGATGTGCCCATTCACCCCCTGACTGGATTGTCAATATGGGGCCTCAGCTCATCCAATTACCCATACAAGGGGTATATAGTTGTCGATGTCACTTTCCCTGTTTCTGTAACTGGAGTGGAAGAGTCACTGTCCATTCTGGCCCTCGTATGCCCTGATCCTCAAGGTCCTCCCCAAGTGCCAGTTATAATTGGTACTAATGCCAGTTTCTTCAAACGTCTCACAGCTTTCAGTCATGATACTGAAGGATCTAGTGCTGCACATGTTTTGAGAATCCAAAGCAAACACCCTGCAATCCATCTGACTCGGAAGCAAGAGACGAAAACTCCTCTTGACAAGCCCGAAGGAAAGGTTTGTTGGACAGGACCTGGTAACTGTGTAGTTCCATCACGGGAGAAGTATGTGCTCTCTGTAAAATGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222349 lncRNA downstream 240943 5854785 ~ 5855167 (-) True G150234
TU222348 lncRNA downstream 241707 5854201 ~ 5854403 (-) True G150233
TU222347 lncRNA downstream 244220 5851285 ~ 5851890 (-) True G150232
TU222203 lncRNA downstream 272197 5822929 ~ 5823913 (-) True G150152
TU222313 lncRNA downstream 332155 5758324 ~ 5763955 (-) False LOC122327537
TU222402 lncRNA upstream 47055 6144878 ~ 6155016 (-) True G150271
TU222404 lncRNA upstream 59674 6157497 ~ 6183901 (-) True G150273
XR_006247652.1 lncRNA upstream 215352 6313175 ~ 6314227 (-) True LOC122327580
TU222325 lncRNA upstream 246316 6344139 ~ 6345150 (-) True G150216
TU222482 lncRNA upstream 279864 6377687 ~ 6381972 (-) True G150322
XM_043222769.1 mRNA downstream 79301 6011435 ~ 6016809 (-) True atp6ap2
XM_043223031.1 mRNA downstream 103352 5989497 ~ 5992758 (-) False use1
XM_043222557.1 mRNA downstream 111667 5927516 ~ 5984443 (-) True insrb
XM_043222549.1 mRNA downstream 175947 5884232 ~ 5920163 (-) False arhgef18b
XM_043222545.1 mRNA downstream 175955 5882826 ~ 5920155 (-) False arhgef18b
XM_043223018.1 mRNA upstream 88146 6185969 ~ 6187727 (-) True mid1ip1b
XM_043222946.1 mRNA upstream 92251 6190074 ~ 6216614 (-) True tspan7b
XM_043222628.1 mRNA upstream 124039 6221862 ~ 6231174 (-) True slc26a11
XM_043222748.1 mRNA upstream 140534 6238357 ~ 6271357 (-) False gnav1
XM_043222747.1 mRNA upstream 140534 6238357 ~ 6271351 (-) True gnav1
TU222356 other downstream 103387 5989500 ~ 5992723 (-) True use1
TU222175 other downstream 234793 5859347 ~ 5861317 (-) False timm13
XR_006247631.1 other downstream 443952 5644413 ~ 5652158 (-) False nisch
XR_006247648.1 other downstream 554030 5538556 ~ 5542080 (-) True bloc1s1
TU222410 other upstream 138429 6236252 ~ 6236865 (-) True G150276
TU222327 other upstream 184633 6282456 ~ 6285577 (-) True gcga
TU222663 other upstream 519752 6617575 ~ 6659352 (-) True G150440
TU222738 other upstream 756947 6854770 ~ 6856863 (-) False nab1a
TU222739 other upstream 756947 6854770 ~ 6889657 (-) False nab1a

Expression Profile