RNA id: XM_043223881.1


Basic Information

Item Value
RNA id XM_043223881.1
length 2072
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC122328175
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6874459 ~ 6880468 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGAGCAAACGCCACAACTGTTTGCTGGAACTTCATTGCACGTCTGCAAAGTGTAGTTACTCatccaaaacatttcattaatgcTTCAAAACTTAGATATCAGTAATTCGGCCAAGGCCACCAAAAcataaagtgtttttgtcattgtgtgaCCCACActggtcaaaatgtttagtGGAACTGTGGAAATGAAGGTTATCTAAAAGTAGATATTTGttgaaaacagaacagaaaaagaacatttgtattcatgcattacatttatttttgtacgaATGTATTACATGTAAAGTGAAATCCTGCCTGTCCgattactgtacatttcatattttttatgttcccacaaatacacaaaaacaggTCATTTGCCAATTTAGCAGACATTACAAAAAATGGCGATGTcaatgaacaatgaaaaatgGACGCGAAGTTGTGAAGAGAAACTAATTGTACAGAGATCTGAACttatttagagagaaaaaaaaagcatctgagAATTGAGCCAAAGCAATTGCAAATATGATAAGTGtaaccattaaaacatttacataacaaTAATTTCTTCtgcgttatttatttaatgtgaaaagTCAATGCTAGATACTTTACGAAGCCAAATCCGGCGAACGGCTCAACAGTTCCTTTGATACAAGGCTCTTTTTAGGTCAGAGCTGTAGTTTATATCAGAGGTCCTGGATGAAACTCAACCCTCCTTCCGCAGATACCTGCACGGATACATGATCTGAGGGGTTCGGGTGAACAGAGGCGGCCCACCTGAAGGAATGGGGAGGACGAGTTACGCGAATCTCCCCAAGACCGGATCCATACCCGAAAGTCTGCCCCTGTACAATAGCGTTTCCCTCCCGGCTGCAAACACACAGCGTCTGCTGCACAGACACATGAACACGCTCCCCACCTGCGGCTGCTCCTCCGATGACAGACGCCGCACTCAAAAGCTCCAGGATGCATCTGTTATTCATGCTTCCATTGGTGCTCAAGGTCCAGTCCATCTCCACGAGCCACAACATCACCTCTACGACTGCACCTGCCACGAGGAGCTCAAAATCAGCAACTGCACCAGCAGCAATTTTACTCACGTGCCCGCCGCTCTCCCACCCTTCACCGAACAGCTGGACCTGTCCCTCAACCACCTCAGCGCCATCCGTCCCCGAGCCTTCCACAGCACACGAAGACTTCGCATCCTGCTCCTCAATGACAACGTGATCGCTGCTCTGGCCAACGGGGCGTTCTCTCTTCTGGAAGGACTCTTGAGGTTGGACCTGAGAAACCGAATCTCATTCCTGGGCGAAGGATTTTCCCAGGGTCTCAGTTCCCTTCGAGATCTGTCACTGGCGGAGAACCGATTGACCAGCTTGGACAGCAGCTGTTTCGTCCACTTTGACTCCCTCCAAAGACTAAACCTCAGCCATAATGCAATCGAGACCATCAAGATGAGGGCGTTTGGGTCCATGAGTACCCTACGCCAGCTACAACTCAACTCCAACAATTTAACGGTTCTCAATAACGGCATCTTCTCCATGCTACGAAACCTTGAAGTCTTGAATTTACATCACAATCAGATACACTACTTGGGCGTCCGGGCGCTTTCTCCATTGACCAGCCTCGCGTTACTGGACCTCACCAACAACAACCTCTCCACGATTCAGTTCAAGACCTTCCTGAGTCTCAACACGTACAGCACTCACATAATGCTCCGAAACCCGTGGAATTGCGACTGCGATCTGCAGCGAGTCTTTCAGAAGCTCTGTAACGTCAAGCGGCTCTTCCTGGACGACTACGACAACCTCACTTGCGTGAATTTGGACGAAAGTCAAAGGAACTAGATGAAAGAGGAGTTCTGCGTGGCAGAGATGGTTACCGTCCTGGTCATCACCATCACGGTGGTCATCACTGTTGTGGCTGCCATAGTCATGgcggagaagaaaaggaaaaaaagaacaaagaaaagcaTTGGACGGAAGTGGGCGAGTTGTCGTATGCGCATCGCAAGACTGAACCAGATAATGCGGATAATGCAAGGAAGGAACATTAATCTTGCATTGTATGGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222747 lncRNA downstream 1283 6871652 ~ 6873176 (-) False mfsd6a
TU222719 lncRNA downstream 69019 6799163 ~ 6805440 (-) True G150472
TU222708 lncRNA downstream 158510 6714794 ~ 6715949 (-) False cep70
TU222687 lncRNA downstream 264831 6607789 ~ 6609628 (-) True G150456
TU222668 lncRNA downstream 267905 6603055 ~ 6606554 (-) True G150442
TU222748 lncRNA upstream 6081 6886549 ~ 6887136 (-) True G150488
TU222750 lncRNA upstream 18775 6899243 ~ 6902815 (-) True G150490
TU222754 lncRNA upstream 59150 6939618 ~ 6940626 (-) True G150494
TU222764 lncRNA upstream 122492 7002960 ~ 7004118 (-) True G150503
TU222802 lncRNA upstream 124588 7005056 ~ 7005447 (-) True G150538
XM_043223880.1 mRNA downstream 1259 6865223 ~ 6873200 (-) True mfsd6a
XM_043222290.1 mRNA downstream 17561 6846890 ~ 6856898 (-) True nab1a
XM_043223492.1 mRNA downstream 31614 6828460 ~ 6842845 (-) False glsa
XM_043223493.1 mRNA downstream 36099 6823485 ~ 6838360 (-) False glsa
XM_043222300.1 mRNA upstream 46496 6926964 ~ 6929270 (-) True LOC122327117
XM_043223882.1 mRNA upstream 48682 6929150 ~ 6934573 (-) True LOC122328177
XM_043222299.1 mRNA upstream 82046 6962514 ~ 6971960 (-) False LOC122327116
XM_043222298.1 mRNA upstream 82046 6962514 ~ 6971958 (-) True LOC122327116
XM_043222297.1 mRNA upstream 106097 6986565 ~ 6994634 (-) True LOC122327115
TU222746 other downstream 4913 6867843 ~ 6869546 (-) False mfsd6a
TU222738 other downstream 17596 6854770 ~ 6856863 (-) False nab1a
TU222663 other downstream 215107 6617575 ~ 6659352 (-) True G150440
TU222327 other downstream 588882 6282456 ~ 6285577 (-) True gcga
TU222410 other downstream 637594 6236252 ~ 6236865 (-) True G150276
TU222752 other upstream 25532 6906000 ~ 6913558 (-) True G150492
TU222808 other upstream 149839 7030307 ~ 7055202 (-) False LOC122327113
XR_006247718.1 other upstream 729388 7609856 ~ 7618398 (-) False LOC122327776
XR_006247717.1 other upstream 729388 7609856 ~ 7618398 (-) True LOC122327776
TU223633 other upstream 2003653 8884121 ~ 8886941 (-) True G151107

Expression Profile